Wall clock time and date at job start Mon Mar 30 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86793 * 120.00120 * 2 1 4 4 H 1.48509 * 109.47118 * 269.99443 * 3 2 1 5 5 H 1.48500 * 109.47607 * 29.99513 * 3 2 1 6 6 H 1.48503 * 109.47455 * 149.99510 * 3 2 1 7 7 C 1.39866 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00331 * 197.96473 * 7 2 1 9 9 C 1.41139 * 119.99771 * 17.97509 * 7 2 1 10 10 C 1.40887 * 120.15718 * 24.60458 * 9 7 2 11 11 C 1.36337 * 119.83516 * 179.97438 * 10 9 7 12 12 C 1.39573 * 120.16183 * 359.97438 * 11 10 9 13 13 N 1.38860 * 119.83961 * 179.97438 * 12 11 10 14 14 C 1.46501 * 119.99447 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.46867 * 180.02562 * 14 13 12 16 16 H 1.08999 * 115.55913 * 29.30984 * 15 14 13 17 17 C 1.52996 * 117.49796 * 243.62275 * 15 14 13 18 18 C 1.52994 * 117.49897 * 174.99839 * 15 14 13 19 19 F 1.39902 * 117.49981 * 214.97738 * 18 15 14 20 20 F 1.39898 * 117.50050 * 0.02562 * 18 15 14 21 21 C 1.39570 * 120.31515 * 0.28126 * 12 11 10 22 22 C 1.36339 * 120.15898 * 359.47607 * 21 12 11 23 23 H 0.97000 * 119.99865 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.08119 * 0.02562 * 10 9 7 25 25 H 1.07994 * 119.91955 * 179.97438 * 11 10 9 26 26 H 0.96999 * 120.00264 * 0.02562 * 13 12 11 27 27 H 1.08994 * 109.47311 * 60.00469 * 14 13 12 28 28 H 1.09003 * 109.47397 * 299.99882 * 14 13 12 29 29 H 1.08999 * 117.50041 * 145.02224 * 17 15 14 30 30 H 1.09003 * 117.49988 * 359.97438 * 17 15 14 31 31 H 1.07996 * 119.91583 * 179.72266 * 21 12 11 32 32 H 1.07996 * 120.08025 * 180.23770 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4907 2.0463 -1.4002 5 1 1.4406 2.6527 0.6999 6 1 3.5406 1.4402 0.7001 7 6 2.0084 -1.2113 0.0005 8 1 3.0489 -1.2341 0.2890 9 6 1.3542 -2.4039 -0.3761 10 6 0.2260 -2.3566 -1.2187 11 6 -0.4005 -3.5127 -1.5788 12 6 0.0736 -4.7410 -1.1154 13 7 -0.5700 -5.9143 -1.4860 14 6 -0.0756 -7.2053 -1.0012 15 6 -0.9561 -8.3284 -1.5530 16 1 -1.4217 -8.1297 -2.5183 17 6 -1.7473 -9.1654 -0.5460 18 6 -0.5333 -9.7684 -1.2556 19 9 -0.7741 -10.7294 -2.2434 20 9 0.6283 -9.9575 -0.4994 21 6 1.1875 -4.7950 -0.2762 22 6 1.8269 -3.6473 0.0881 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1411 -1.4070 -1.5789 25 1 -1.2656 -3.4780 -2.2242 26 1 -1.3468 -5.8791 -2.0659 27 1 -0.1071 -7.2206 0.0882 28 1 0.9511 -7.3507 -1.3371 29 1 -2.7334 -9.5175 -0.8487 30 1 -1.6403 -8.9163 0.5098 31 1 1.5461 -5.7486 0.0821 32 1 2.6910 -3.6909 0.7344 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691638758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:22 Heat of formation + Delta-G solvation = -63.455484 kcal Electronic energy + Delta-G solvation = -17444.113989 eV Core-core repulsion = 14233.275682 eV Total energy + Delta-G solvation = -3210.838307 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.68791 -48.38343 -39.85113 -38.13123 -36.11779 -34.43248 -31.52085 -30.59947 -27.94247 -25.67085 -23.56477 -23.18593 -22.10272 -21.69006 -19.13880 -18.79854 -18.15232 -17.23815 -17.04821 -16.68402 -16.19693 -15.69100 -15.55662 -15.03782 -14.67555 -14.60612 -14.51245 -14.28677 -14.04293 -13.77929 -13.55561 -13.17712 -12.77576 -12.66454 -12.49333 -12.29053 -11.83152 -11.56262 -11.19471 -11.08602 -10.91395 -10.30836 -9.39960 -8.55556 -8.18332 -6.01282 1.10074 1.19127 1.41345 1.53619 1.59364 1.92445 2.11626 2.28189 2.84182 2.85257 3.33332 3.36031 3.64507 3.85268 4.02665 4.38977 4.47544 4.49854 4.64413 4.68345 4.82751 4.92703 5.02926 5.18398 5.31441 5.41426 5.72992 5.75793 5.92518 6.18780 6.41054 6.65529 6.85558 7.08727 7.12634 7.29617 8.48215 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.063715 B = 0.003673 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.350404 B = 7621.941072 C = 7870.123184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.034 3.966 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.037 3.963 10 C -0.143 4.143 11 C -0.169 4.169 12 C 0.109 3.891 13 N -0.747 5.747 14 C 0.165 3.835 15 C -0.154 4.154 16 H 0.150 0.850 17 C -0.143 4.143 18 C 0.179 3.821 19 F -0.169 7.169 20 F -0.173 7.173 21 C -0.167 4.167 22 C -0.200 4.200 23 H 0.283 0.717 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.400 0.600 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.150 0.850 30 H 0.133 0.867 31 H 0.113 0.887 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.080 -14.101 -2.605 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.179 4.179 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.539 4.539 8 H 0.085 0.915 9 C 0.034 3.966 10 C -0.163 4.163 11 C -0.191 4.191 12 C 0.010 3.990 13 N -0.384 5.384 14 C 0.040 3.960 15 C -0.173 4.173 16 H 0.168 0.832 17 C -0.180 4.180 18 C 0.142 3.858 19 F -0.150 7.150 20 F -0.153 7.153 21 C -0.189 4.189 22 C -0.220 4.220 23 H 0.093 0.907 24 H 0.119 0.881 25 H 0.130 0.870 26 H 0.235 0.765 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.167 0.833 30 H 0.151 0.849 31 H 0.131 0.869 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.133 -14.129 -2.494 15.237 hybrid contribution 0.406 0.667 -0.159 0.797 sum -4.727 -13.461 -2.653 14.511 Atomic orbital electron populations 1.69910 1.08691 1.29846 1.38332 1.26590 0.95462 1.04016 0.91789 0.85294 0.79024 0.76592 0.79272 1.18928 1.19474 1.18602 1.19612 0.98044 0.92839 1.43357 0.91524 1.17830 0.93587 0.92936 0.92223 1.20879 0.98802 0.96839 0.99771 1.20243 1.02101 0.91544 1.05248 1.17396 0.95231 0.86201 1.00169 1.43751 1.34998 1.01588 1.58028 1.20568 0.96081 0.81401 0.97991 1.23805 1.00992 0.88960 1.03544 0.83247 1.24639 0.95963 0.96665 1.00783 1.20334 0.87151 0.88645 0.89685 1.93007 1.94056 1.65810 1.62113 1.93003 1.50848 1.96006 1.75460 1.20126 0.98132 0.97435 1.03215 1.20751 1.03125 0.93005 1.05161 0.90682 0.88086 0.87019 0.76487 0.92359 0.93170 0.83256 0.84927 0.86943 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.45 10.96 21.82 0.24 -45.21 16 2 C 0.03 1.76 5.13 85.23 0.44 2.20 16 3 Si 0.98 39.96 29.59 68.60 2.03 41.99 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.51 -28.56 9.03 23.38 0.21 -28.35 16 8 H 0.07 3.66 7.91 -2.91 -0.02 3.64 16 9 C 0.04 2.06 5.57 -21.27 -0.12 1.94 16 10 C -0.14 -7.60 8.64 22.47 0.19 -7.41 16 11 C -0.17 -7.67 9.82 22.15 0.22 -7.45 16 12 C 0.11 4.49 6.67 38.67 0.26 4.75 16 13 N -0.75 -22.64 5.70 -338.97 -1.93 -24.57 16 14 C 0.16 4.13 4.81 86.38 0.42 4.55 16 15 C -0.15 -2.73 5.83 -10.79 -0.06 -2.80 16 16 H 0.15 2.18 8.04 -2.39 -0.02 2.16 16 17 C -0.14 -1.92 10.15 30.59 0.31 -1.61 16 18 C 0.18 3.48 5.20 30.59 0.16 3.64 16 19 F -0.17 -3.60 17.60 44.97 0.79 -2.81 16 20 F -0.17 -4.12 17.14 44.97 0.77 -3.35 16 21 C -0.17 -7.32 9.23 22.15 0.20 -7.12 16 22 C -0.20 -10.08 9.74 22.48 0.22 -9.87 16 23 H 0.28 13.89 8.30 -92.71 -0.77 13.13 16 24 H 0.10 5.65 6.16 -2.91 -0.02 5.63 16 25 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 26 H 0.40 10.18 8.40 -92.71 -0.78 9.40 16 27 H 0.06 1.50 7.65 -2.39 -0.02 1.48 16 28 H 0.05 1.39 7.94 -2.39 -0.02 1.37 16 29 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.13 1.64 8.03 -2.39 -0.02 1.62 16 31 H 0.11 4.30 6.68 -2.91 -0.02 4.28 16 32 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -62.71 285.51 4.72 -58.00 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.37 Total: 23.46 kcal Atomic # 6 Polarization: -49.96 SS G_CDS: 2.44 Total: -47.51 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -1.69 Total: -69.78 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 1.56 Total: -6.16 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -62.71 4.72 -58.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691638758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.459 kcal (2) G-P(sol) polarization free energy of solvation -62.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds