Wall clock time and date at job start Mon Mar 30 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48500 * 109.47211 * 240.00007 * 3 2 1 5 5 H 1.48508 * 109.47032 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47391 * 119.99752 * 3 2 1 7 7 C 1.39864 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00014 * 197.95097 * 7 2 1 9 9 C 1.41133 * 119.99972 * 17.95536 * 7 2 1 10 10 C 1.40895 * 120.15473 * 204.60386 * 9 7 2 11 11 C 1.36330 * 119.83637 * 180.02562 * 10 9 7 12 12 C 1.39571 * 120.16409 * 359.97438 * 11 10 9 13 13 N 1.38851 * 119.84319 * 179.97438 * 12 11 10 14 14 C 1.46503 * 119.99799 * 179.97438 * 13 12 11 15 15 C 1.53010 * 109.46779 * 179.97438 * 14 13 12 16 16 H 1.08997 * 115.55157 * 29.33411 * 15 14 13 17 17 C 1.53004 * 117.49662 * 175.00099 * 15 14 13 18 18 C 1.53001 * 60.03265 * 107.47703 * 17 15 14 19 19 F 1.39898 * 117.49737 * 107.49654 * 18 17 15 20 20 F 1.39895 * 117.49952 * 252.52280 * 18 17 15 21 21 C 1.39562 * 120.31133 * 0.25472 * 12 11 10 22 22 C 1.36346 * 120.16402 * 359.48307 * 21 12 11 23 23 H 0.96995 * 120.00426 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.07675 * 0.03614 * 10 9 7 25 25 H 1.08007 * 119.92006 * 179.97438 * 11 10 9 26 26 H 0.97007 * 120.00262 * 359.97438 * 13 12 11 27 27 H 1.08999 * 109.47187 * 60.00634 * 14 13 12 28 28 H 1.08994 * 109.47120 * 299.99754 * 14 13 12 29 29 H 1.09000 * 117.49620 * 214.98260 * 17 15 14 30 30 H 1.09001 * 117.49564 * 359.97438 * 17 15 14 31 31 H 1.07998 * 119.91943 * 179.72462 * 21 12 11 32 32 H 1.07995 * 120.08269 * 180.23525 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6965 -1.2125 5 1 1.2779 2.7465 0.0006 6 1 3.0968 1.6965 1.2126 7 6 2.0084 -1.2112 0.0005 8 1 3.0490 -1.2339 0.2888 9 6 1.3543 -2.4039 -0.3757 10 6 1.8268 -3.6472 0.0891 11 6 1.1903 -4.7953 -0.2788 12 6 0.0730 -4.7412 -1.1134 13 7 -0.5699 -5.9146 -1.4844 14 6 -1.7434 -5.8617 -2.3598 15 6 -2.2555 -7.2812 -2.6125 16 1 -2.0723 -7.9967 -1.8109 17 6 -3.5510 -7.4329 -3.4124 18 6 -2.2107 -7.8031 -4.0509 19 9 -1.9374 -9.1625 -4.2368 20 9 -1.7046 -6.9456 -5.0335 21 6 -0.3977 -3.5135 -1.5815 22 6 0.2256 -2.3568 -1.2174 23 1 -0.4850 0.8400 0.0004 24 1 2.6910 -3.6905 0.7355 25 1 1.5516 -5.7492 0.0764 26 1 -0.2420 -6.7695 -1.1639 27 1 -1.4684 -5.4009 -3.3086 28 1 -2.5262 -5.2721 -1.8828 29 1 -4.2198 -8.2484 -3.1373 30 1 -4.0385 -6.5214 -3.7583 31 1 -1.2602 -3.4793 -2.2306 32 1 -0.1420 -1.4073 -1.5773 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691638760.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:26 Heat of formation + Delta-G solvation = -48.163477 kcal Electronic energy + Delta-G solvation = -17558.775993 eV Core-core repulsion = 14348.600797 eV Total energy + Delta-G solvation = -3210.175196 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.76658 -47.44765 -38.18674 -36.93724 -34.53197 -32.74807 -29.47451 -29.05080 -26.41842 -23.88378 -22.76273 -21.78363 -20.61167 -19.96860 -17.89707 -17.20987 -17.01945 -16.14480 -15.74444 -15.13738 -14.89444 -14.16139 -13.94785 -13.82545 -13.58756 -13.55405 -13.35969 -12.64570 -12.61761 -12.09892 -11.69813 -11.60615 -11.47274 -11.01674 -10.96502 -10.82930 -10.48728 -10.03239 -9.71333 -9.29550 -9.22859 -8.55562 -7.50251 -6.65064 -6.41756 -4.04279 2.86560 2.90477 2.93928 3.09810 3.14404 3.17800 3.35761 3.79915 4.05411 4.15299 4.46682 4.60665 4.76225 4.95039 5.21355 5.36842 5.52384 5.77136 5.88173 5.99052 6.25871 6.30722 6.89362 6.92794 7.19274 7.35019 7.52801 7.67959 7.82500 8.14435 8.26746 8.46446 8.66265 8.77828 9.05504 9.14161 10.36886 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.044636 B = 0.004011 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.144455 B = 6978.673618 C = 7232.347643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.468 4.468 8 H 0.073 0.927 9 C 0.076 3.924 10 C -0.188 4.188 11 C -0.156 4.156 12 C 0.088 3.912 13 N -0.761 5.761 14 C 0.163 3.837 15 C -0.153 4.153 16 H 0.132 0.868 17 C -0.168 4.168 18 C 0.192 3.808 19 F -0.164 7.164 20 F -0.156 7.156 21 C -0.162 4.162 22 C -0.125 4.125 23 H 0.277 0.723 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.385 0.615 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 -10.815 -5.166 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.499 4.499 8 H 0.091 0.909 9 C 0.073 3.927 10 C -0.208 4.208 11 C -0.178 4.178 12 C -0.009 4.009 13 N -0.397 5.397 14 C 0.037 3.963 15 C -0.173 4.173 16 H 0.150 0.850 17 C -0.206 4.206 18 C 0.155 3.845 19 F -0.145 7.145 20 F -0.136 7.136 21 C -0.184 4.184 22 C -0.145 4.145 23 H 0.088 0.912 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.218 0.782 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.106 0.894 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.159 -10.551 -5.300 13.808 hybrid contribution 0.538 0.303 -0.026 0.618 sum -6.620 -10.249 -5.326 13.313 Atomic orbital electron populations 1.69844 1.07378 1.28755 1.37476 1.25794 0.94652 1.00889 0.92657 0.86459 0.80141 0.80796 0.79762 1.19060 1.20568 1.19258 1.19351 0.97944 0.91391 1.41189 0.90933 1.17499 0.92365 0.91991 0.90836 1.20547 1.02736 0.92598 1.04907 1.19801 0.97723 0.97104 1.03164 1.17306 0.95943 0.85431 1.02175 1.43759 1.32593 1.06125 1.57247 1.20562 0.89353 0.91047 0.95295 1.23951 0.99374 1.00972 0.92980 0.84977 1.24354 0.91096 1.05474 0.99666 1.20133 1.01971 0.73684 0.88705 1.93013 1.94840 1.30557 1.96071 1.93029 1.88556 1.68299 1.63765 1.20089 1.01663 0.91937 1.04738 1.20933 0.98234 0.96433 0.98924 0.91245 0.88994 0.89549 0.78225 0.92113 0.91710 0.85871 0.85703 0.89430 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.39 10.96 55.54 0.61 -20.78 16 2 C 0.08 1.95 5.13 -17.34 -0.09 1.86 16 3 Si 0.90 19.22 29.60 -169.99 -5.03 14.19 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.47 -12.74 9.03 -37.88 -0.34 -13.08 16 8 H 0.07 1.90 7.91 -52.49 -0.41 1.49 16 9 C 0.08 2.06 5.57 -106.79 -0.60 1.47 16 10 C -0.19 -4.66 9.74 -39.26 -0.38 -5.05 16 11 C -0.16 -3.50 9.82 -39.77 -0.39 -3.89 16 12 C 0.09 1.91 6.67 -83.69 -0.56 1.35 16 13 N -0.76 -12.99 5.70 -58.50 -0.33 -13.33 16 14 C 0.16 2.32 5.16 -4.04 -0.02 2.30 16 15 C -0.15 -1.64 5.84 -90.57 -0.53 -2.17 16 16 H 0.13 1.24 8.04 -51.93 -0.42 0.83 16 17 C -0.17 -1.40 10.22 -26.73 -0.27 -1.67 16 18 C 0.19 2.22 5.20 -26.69 -0.14 2.08 16 19 F -0.16 -2.02 17.60 2.25 0.04 -1.98 16 20 F -0.16 -2.16 16.48 2.25 0.04 -2.12 16 21 C -0.16 -3.80 9.23 -39.77 -0.37 -4.17 16 22 C -0.13 -3.29 8.64 -39.26 -0.34 -3.63 16 23 H 0.28 6.72 8.30 -40.82 -0.34 6.39 16 24 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 25 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 26 H 0.39 5.79 8.40 -40.82 -0.34 5.45 16 27 H 0.06 0.94 6.83 -51.93 -0.35 0.59 16 28 H 0.06 0.93 7.94 -51.93 -0.41 0.51 16 29 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.85 6.68 -52.49 -0.35 1.50 16 32 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 LS Contribution 284.54 15.07 4.29 4.29 Total: -1.00 -28.85 284.54 -7.86 -36.71 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -3.44 Total: 7.64 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -4.02 Total: -24.61 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.28 Total: -34.11 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.08 Total: -4.11 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.85 -7.86 -36.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691638760.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.455 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds