Wall clock time and date at job start Mon Mar 30 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48500 * 109.47211 * 240.00007 * 3 2 1 5 5 H 1.48508 * 109.47032 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47391 * 119.99752 * 3 2 1 7 7 C 1.39864 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00014 * 197.95097 * 7 2 1 9 9 C 1.41133 * 119.99972 * 17.95536 * 7 2 1 10 10 C 1.40895 * 120.15473 * 204.60386 * 9 7 2 11 11 C 1.36330 * 119.83637 * 180.02562 * 10 9 7 12 12 C 1.39571 * 120.16409 * 359.97438 * 11 10 9 13 13 N 1.38851 * 119.84319 * 179.97438 * 12 11 10 14 14 C 1.46503 * 119.99799 * 179.97438 * 13 12 11 15 15 C 1.53010 * 109.46779 * 179.97438 * 14 13 12 16 16 H 1.08997 * 115.55157 * 29.33411 * 15 14 13 17 17 C 1.53004 * 117.49662 * 175.00099 * 15 14 13 18 18 C 1.53001 * 60.03265 * 107.47703 * 17 15 14 19 19 F 1.39898 * 117.49737 * 107.49654 * 18 17 15 20 20 F 1.39895 * 117.49952 * 252.52280 * 18 17 15 21 21 C 1.39562 * 120.31133 * 0.25472 * 12 11 10 22 22 C 1.36346 * 120.16402 * 359.48307 * 21 12 11 23 23 H 0.96995 * 120.00426 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.07675 * 0.03614 * 10 9 7 25 25 H 1.08007 * 119.92006 * 179.97438 * 11 10 9 26 26 H 0.97007 * 120.00262 * 359.97438 * 13 12 11 27 27 H 1.08999 * 109.47187 * 60.00634 * 14 13 12 28 28 H 1.08994 * 109.47120 * 299.99754 * 14 13 12 29 29 H 1.09000 * 117.49620 * 214.98260 * 17 15 14 30 30 H 1.09001 * 117.49564 * 359.97438 * 17 15 14 31 31 H 1.07998 * 119.91943 * 179.72462 * 21 12 11 32 32 H 1.07995 * 120.08269 * 180.23525 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6965 -1.2125 5 1 1.2779 2.7465 0.0006 6 1 3.0968 1.6965 1.2126 7 6 2.0084 -1.2112 0.0005 8 1 3.0490 -1.2339 0.2888 9 6 1.3543 -2.4039 -0.3757 10 6 1.8268 -3.6472 0.0891 11 6 1.1903 -4.7953 -0.2788 12 6 0.0730 -4.7412 -1.1134 13 7 -0.5699 -5.9146 -1.4844 14 6 -1.7434 -5.8617 -2.3598 15 6 -2.2555 -7.2812 -2.6125 16 1 -2.0723 -7.9967 -1.8109 17 6 -3.5510 -7.4329 -3.4124 18 6 -2.2107 -7.8031 -4.0509 19 9 -1.9374 -9.1625 -4.2368 20 9 -1.7046 -6.9456 -5.0335 21 6 -0.3977 -3.5135 -1.5815 22 6 0.2256 -2.3568 -1.2174 23 1 -0.4850 0.8400 0.0004 24 1 2.6910 -3.6905 0.7355 25 1 1.5516 -5.7492 0.0764 26 1 -0.2420 -6.7695 -1.1639 27 1 -1.4684 -5.4009 -3.3086 28 1 -2.5262 -5.2721 -1.8828 29 1 -4.2198 -8.2484 -3.1373 30 1 -4.0385 -6.5214 -3.7583 31 1 -1.2602 -3.4793 -2.2306 32 1 -0.1420 -1.4073 -1.5773 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691638760.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:25 Heat of formation + Delta-G solvation = -63.978532 kcal Electronic energy + Delta-G solvation = -17559.461785 eV Core-core repulsion = 14348.600797 eV Total energy + Delta-G solvation = -3210.860988 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.68021 -48.38044 -39.84362 -38.09847 -36.12427 -34.46691 -31.35416 -30.78493 -27.91156 -25.61722 -23.57004 -23.25333 -22.12711 -21.55583 -19.15059 -18.82656 -18.19270 -17.33667 -16.93702 -16.75823 -16.42793 -15.64842 -15.16478 -14.94983 -14.72865 -14.62566 -14.56923 -14.28644 -14.10975 -13.74257 -13.50718 -13.22654 -12.73152 -12.61272 -12.47936 -12.29776 -11.96086 -11.58855 -11.17638 -11.11394 -10.85109 -10.29236 -9.40697 -8.54919 -8.18619 -6.01097 1.11241 1.18917 1.40912 1.51574 1.60367 2.04243 2.11588 2.27967 2.70543 2.84804 3.32708 3.51949 3.62134 3.85353 4.04772 4.38324 4.46947 4.52066 4.63124 4.68480 4.83419 4.96064 5.04447 5.13995 5.27707 5.45556 5.67657 5.79576 5.95882 6.18848 6.38399 6.65196 6.85233 7.08530 7.13140 7.29125 8.48386 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.044636 B = 0.004011 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.144455 B = 6978.673618 C = 7232.347643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.034 3.966 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.508 4.508 8 H 0.068 0.932 9 C 0.036 3.964 10 C -0.197 4.197 11 C -0.163 4.163 12 C 0.108 3.892 13 N -0.751 5.751 14 C 0.159 3.841 15 C -0.153 4.153 16 H 0.151 0.849 17 C -0.132 4.132 18 C 0.164 3.836 19 F -0.171 7.171 20 F -0.176 7.176 21 C -0.173 4.173 22 C -0.145 4.145 23 H 0.283 0.717 24 H 0.097 0.903 25 H 0.119 0.881 26 H 0.399 0.601 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.154 0.846 30 H 0.137 0.863 31 H 0.106 0.894 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.896 -12.126 -5.198 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.179 4.179 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.033 3.967 10 C -0.217 4.217 11 C -0.185 4.185 12 C 0.008 3.992 13 N -0.387 5.387 14 C 0.034 3.966 15 C -0.172 4.172 16 H 0.168 0.832 17 C -0.170 4.170 18 C 0.128 3.872 19 F -0.152 7.152 20 F -0.157 7.157 21 C -0.196 4.196 22 C -0.166 4.166 23 H 0.093 0.907 24 H 0.115 0.885 25 H 0.137 0.863 26 H 0.233 0.767 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.172 0.828 30 H 0.155 0.845 31 H 0.124 0.876 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.219 -11.916 -5.341 15.430 hybrid contribution 0.798 0.507 -0.056 0.947 sum -7.421 -11.409 -5.397 14.641 Atomic orbital electron populations 1.69905 1.08732 1.29899 1.38286 1.26597 0.95450 1.04039 0.91777 0.85357 0.78795 0.76331 0.79773 1.18859 1.19370 1.18626 1.19591 0.98079 0.92829 1.43435 0.91389 1.17830 0.93535 0.93063 0.92234 1.20766 1.03128 0.92873 1.04976 1.20113 0.97678 0.97719 1.03013 1.17421 0.95115 0.86498 1.00119 1.43817 1.32862 1.05177 1.56854 1.20650 0.88275 0.93704 0.93974 1.23858 1.01324 0.98919 0.93082 0.83174 1.24543 0.89795 1.06698 0.95941 1.20576 1.04864 0.73211 0.88585 1.92994 1.95131 1.30983 1.96095 1.92985 1.89121 1.68919 1.64628 1.20262 1.02241 0.91850 1.05207 1.20870 0.98989 0.96755 0.99938 0.90694 0.88461 0.86304 0.76653 0.93444 0.91275 0.82792 0.84480 0.87584 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.84 10.96 21.82 0.24 -45.60 16 2 C 0.03 1.77 5.13 85.22 0.44 2.21 16 3 Si 0.98 40.15 29.60 68.60 2.03 42.18 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.51 -28.73 9.03 23.37 0.21 -28.52 16 8 H 0.07 3.72 7.91 -2.91 -0.02 3.70 16 9 C 0.04 2.03 5.57 -21.27 -0.12 1.91 16 10 C -0.20 -9.91 9.74 22.48 0.22 -9.69 16 11 C -0.16 -7.12 9.82 22.15 0.22 -6.90 16 12 C 0.11 4.52 6.67 38.67 0.26 4.78 16 13 N -0.75 -23.74 5.70 -338.98 -1.93 -25.67 16 14 C 0.16 4.13 5.16 86.38 0.45 4.57 16 15 C -0.15 -2.77 5.84 -10.76 -0.06 -2.83 16 16 H 0.15 2.21 8.04 -2.39 -0.02 2.19 16 17 C -0.13 -1.68 10.22 30.60 0.31 -1.37 16 18 C 0.16 3.41 5.20 30.62 0.16 3.57 16 19 F -0.17 -3.87 17.60 44.97 0.79 -3.08 16 20 F -0.18 -4.68 16.48 44.97 0.74 -3.94 16 21 C -0.17 -8.10 9.23 22.15 0.20 -7.90 16 22 C -0.15 -7.88 8.64 22.48 0.19 -7.68 16 23 H 0.28 14.04 8.30 -92.71 -0.77 13.27 16 24 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 25 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 26 H 0.40 10.66 8.40 -92.70 -0.78 9.88 16 27 H 0.05 1.40 6.83 -2.39 -0.02 1.38 16 28 H 0.07 1.79 7.94 -2.39 -0.02 1.77 16 29 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.11 4.44 6.68 -2.91 -0.02 4.42 16 32 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 Total: -1.00 -64.41 284.54 4.72 -59.69 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.37 Total: 24.28 kcal Atomic # 6 Polarization: -50.33 SS G_CDS: 2.48 Total: -47.85 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -1.69 Total: -71.27 kcal Atomic # 9 Polarization: -8.55 SS G_CDS: 1.53 Total: -7.02 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -64.41 4.72 -59.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691638760.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.291 kcal (2) G-P(sol) polarization free energy of solvation -64.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds