Wall clock time and date at job start Mon Mar 30 2020 07:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.75885 * 125.20273 * 2 1 4 4 C 1.75882 * 90.97235 * 179.86702 * 3 2 1 5 5 C 1.33390 * 109.58904 * 0.30107 * 4 3 2 6 6 C 1.50703 * 122.53754 * 179.90634 * 5 4 3 7 7 N 1.46894 * 109.47113 * 259.70993 * 6 5 4 8 8 C 1.46906 * 111.00072 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47040 * 35.00003 * 8 7 6 10 10 C 1.52993 * 109.47378 * 275.00214 * 8 7 6 11 11 C 1.53002 * 109.47053 * 154.99769 * 8 7 6 12 12 C 1.50698 * 109.47253 * 295.00277 * 11 8 7 13 13 H 1.08003 * 120.00121 * 0.02562 * 12 11 8 14 14 C 1.37882 * 119.99840 * 179.97438 * 12 11 8 15 15 N 1.31510 * 120.00071 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99922 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46993 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46742 * 119.99998 * 16 14 12 19 19 H 1.48503 * 109.47150 * 240.00344 * 16 14 12 20 20 C 1.33380 * 125.20457 * 180.02562 * 2 1 3 21 21 C 1.50699 * 122.53896 * 359.94636 * 20 2 1 22 22 H 1.09004 * 109.47016 * 269.96107 * 1 2 3 23 23 H 1.09004 * 109.46925 * 29.95800 * 1 2 3 24 24 H 1.08993 * 109.47208 * 149.95399 * 1 2 3 25 25 H 1.07997 * 125.21022 * 180.18339 * 4 3 2 26 26 H 1.08998 * 109.46993 * 139.70887 * 6 5 4 27 27 H 1.09000 * 109.46979 * 19.71181 * 6 5 4 28 28 H 1.00901 * 111.00370 * 56.04902 * 7 6 5 29 29 H 1.09004 * 109.46998 * 59.99419 * 10 8 7 30 30 H 1.08992 * 109.47715 * 179.97438 * 10 8 7 31 31 H 1.09004 * 109.46862 * 299.99897 * 10 8 7 32 32 H 1.08998 * 109.46957 * 55.00131 * 11 8 7 33 33 H 1.09000 * 109.47241 * 175.00051 * 11 8 7 34 34 H 0.96998 * 120.00369 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.47191 * 270.01803 * 21 20 2 36 36 H 1.09005 * 109.47097 * 30.02227 * 21 20 2 37 37 H 1.08999 * 109.47588 * 150.01811 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5209 1.4372 0.0000 4 6 3.9751 0.4478 0.0041 5 6 3.6379 -0.8428 -0.0014 6 6 4.6623 -1.9481 -0.0019 7 7 4.8181 -2.4708 -1.3658 8 6 5.8117 -3.5521 -1.4050 9 1 5.7548 -4.1314 -0.4833 10 6 7.2125 -2.9529 -1.5449 11 6 5.5256 -4.4646 -2.5993 12 6 4.1981 -5.1499 -2.4013 13 1 3.6165 -4.9539 -1.5126 14 6 3.7257 -6.0264 -3.3551 15 7 4.4338 -6.2647 -4.4373 16 14 2.0805 -6.8764 -3.1093 17 1 1.4863 -6.4413 -1.8197 18 1 1.1658 -6.5154 -4.2220 19 1 2.2814 -8.3477 -3.0909 20 6 2.2759 -1.0898 -0.0005 21 6 1.7051 -2.4846 0.0001 22 1 -0.3633 -0.0007 1.0277 23 1 -0.3633 0.8904 -0.5132 24 1 -0.3633 -0.8895 -0.5145 25 1 4.9863 0.8271 0.0083 26 1 4.3321 -2.7497 0.6589 27 1 5.6177 -1.5582 0.3492 28 1 5.0613 -1.7333 -2.0101 29 1 7.4162 -2.3027 -0.6941 30 1 7.9497 -3.7551 -1.5735 31 1 7.2693 -2.3736 -2.4666 32 1 5.4947 -3.8696 -3.5120 33 1 6.3129 -5.2141 -2.6807 34 1 4.1016 -6.8816 -5.1082 35 1 1.5680 -2.8206 1.0278 36 1 0.7436 -2.4839 -0.5134 37 1 2.3909 -3.1581 -0.5139 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695857980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:53 Heat of formation + Delta-G solvation = 11.790505 kcal Electronic energy + Delta-G solvation = -16651.974504 eV Core-core repulsion = 14134.072589 eV Total energy + Delta-G solvation = -2517.901915 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.87677 -36.35313 -33.07071 -32.16692 -30.00811 -29.16149 -27.22719 -25.69574 -24.39140 -22.88339 -20.80315 -19.69927 -17.85416 -17.05552 -16.14547 -14.94309 -14.88810 -14.42432 -14.19887 -13.98767 -13.41298 -12.99290 -12.65892 -12.53857 -12.39871 -12.23167 -11.83927 -11.67389 -11.54694 -11.42215 -11.24710 -11.14971 -10.85312 -10.61893 -10.47027 -10.34265 -10.02342 -9.26456 -8.93293 -8.31853 -8.22468 -8.05773 -7.52331 -5.84854 -3.82005 1.17529 1.81190 2.14547 2.87800 3.39638 3.47109 3.51058 4.58859 4.91252 4.97877 5.18410 5.30195 5.50045 5.52781 5.53690 5.65272 5.71340 5.75858 5.84016 5.93166 5.96976 6.03713 6.05256 6.09891 6.35530 6.45826 6.54775 6.65541 6.77130 6.94768 7.05359 7.58947 7.72789 8.05088 8.09781 8.20715 8.63653 9.23276 9.78921 11.27485 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.006443 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.865762 B = 4344.776656 C = 5441.017254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.192 4.192 3 S 0.061 5.939 4 C -0.216 4.216 5 C -0.076 4.076 6 C 0.116 3.884 7 N -0.656 5.656 8 C 0.089 3.911 9 H 0.064 0.936 10 C -0.180 4.180 11 C 0.033 3.967 12 C -0.484 4.484 13 H 0.059 0.941 14 C 0.049 3.951 15 N -0.904 5.904 16 Si 0.886 3.114 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.288 1.288 20 C -0.074 4.074 21 C -0.104 4.104 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.158 0.842 26 H 0.079 0.921 27 H 0.026 0.974 28 H 0.332 0.668 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.016 0.984 33 H 0.017 0.983 34 H 0.256 0.744 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.011 13.289 10.143 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.308 4.308 3 S 0.326 5.674 4 C -0.352 4.352 5 C -0.089 4.089 6 C -0.016 4.016 7 N -0.286 5.286 8 C -0.020 4.020 9 H 0.083 0.917 10 C -0.239 4.239 11 C -0.005 4.005 12 C -0.523 4.523 13 H 0.077 0.923 14 C -0.150 4.150 15 N -0.546 5.546 16 Si 0.715 3.285 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.215 1.215 20 C -0.085 4.085 21 C -0.163 4.163 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.097 0.903 25 H 0.176 0.824 26 H 0.097 0.903 27 H 0.044 0.956 28 H 0.150 0.850 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.837 14.357 10.043 17.937 hybrid contribution 0.346 -1.320 0.039 1.365 sum -3.491 13.038 10.082 16.847 Atomic orbital electron populations 1.20291 0.88219 1.02945 1.02208 1.24146 0.99540 0.94903 1.12230 1.83944 0.97579 1.10355 1.75530 1.25293 1.01273 0.96146 1.12486 1.18859 0.94637 0.93960 1.01452 1.20633 0.93755 0.93968 0.93208 1.60559 1.50913 1.12712 1.04385 1.21821 0.86201 0.92168 1.01847 0.91733 1.22557 1.00317 1.00847 1.00192 1.19116 0.96813 0.92964 0.91561 1.21170 1.03769 1.22465 1.04846 0.92266 1.25004 0.97097 0.97344 0.95548 1.69969 1.38034 1.36872 1.09693 0.86622 0.84718 0.79138 0.78020 1.19728 1.21372 1.21486 1.18717 0.92159 0.96412 1.01245 1.20675 1.01668 0.92308 1.01622 0.91220 0.91820 0.90332 0.82444 0.90317 0.95622 0.85033 0.94474 0.92485 0.93059 0.96529 0.96497 0.93450 0.92080 0.92049 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.05 36.01 0.36 -0.49 16 2 C -0.19 -2.63 6.50 -36.01 -0.23 -2.86 16 3 S 0.06 0.77 23.33 -107.50 -2.51 -1.74 16 4 C -0.22 -2.91 10.95 29.04 0.32 -2.59 16 5 C -0.08 -1.15 5.31 -106.25 -0.56 -1.72 16 6 C 0.12 1.81 4.93 -4.98 -0.02 1.79 16 7 N -0.66 -12.07 5.69 -107.99 -0.61 -12.68 16 8 C 0.09 1.76 2.53 -67.71 -0.17 1.59 16 9 H 0.06 1.30 7.80 -51.93 -0.41 0.89 16 10 C -0.18 -2.99 9.16 37.15 0.34 -2.65 16 11 C 0.03 0.83 4.65 -27.88 -0.13 0.70 16 12 C -0.48 -13.42 8.84 -34.44 -0.30 -13.72 16 13 H 0.06 1.62 7.72 -52.48 -0.40 1.21 16 14 C 0.05 1.41 5.46 -17.82 -0.10 1.32 16 15 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 16 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 C -0.07 -1.13 5.80 -106.25 -0.62 -1.74 16 21 C -0.10 -1.61 9.33 36.00 0.34 -1.27 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.08 0.85 6.64 -51.93 -0.34 0.51 16 25 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 26 H 0.08 1.27 7.61 -51.93 -0.39 0.87 16 27 H 0.03 0.37 7.36 -51.93 -0.38 -0.01 16 28 H 0.33 5.95 8.46 -39.29 -0.33 5.62 16 29 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.89 6.61 -51.93 -0.34 0.55 16 37 H 0.10 1.82 7.09 -51.93 -0.37 1.45 16 LS Contribution 316.77 15.07 4.77 4.77 Total: -1.00 -29.85 316.77 -9.30 -39.15 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.88 Total: 1.94 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -0.79 Total: -21.67 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.12 Total: -39.40 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.85 -9.30 -39.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695857980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.944 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds