Wall clock time and date at job start Mon Mar 30 2020 07:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.75887 * 125.20123 * 2 1 4 4 C 1.75886 * 90.96789 * 180.10443 * 3 2 1 5 5 C 1.33391 * 109.59495 * 359.68563 * 4 3 2 6 6 C 1.50700 * 122.54338 * 180.22299 * 5 4 3 7 7 N 1.46896 * 109.47297 * 260.02822 * 6 5 4 8 8 C 1.46893 * 111.00142 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47168 * 324.99553 * 8 7 6 10 10 C 1.53007 * 109.47127 * 84.99781 * 8 7 6 11 11 C 1.53000 * 109.47253 * 204.99502 * 8 7 6 12 12 C 1.50705 * 109.47156 * 65.00140 * 11 8 7 13 13 H 1.08003 * 119.99510 * 359.97438 * 12 11 8 14 14 C 1.37872 * 120.00383 * 180.02562 * 12 11 8 15 15 N 1.31512 * 119.99727 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00078 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47295 * 89.99463 * 16 14 12 18 18 H 1.48501 * 109.46844 * 209.99373 * 16 14 12 19 19 H 1.48500 * 109.47021 * 329.99051 * 16 14 12 20 20 C 1.33390 * 125.20275 * 179.75656 * 2 1 3 21 21 C 1.50702 * 122.53930 * 359.94685 * 20 2 1 22 22 H 1.08993 * 109.47529 * 270.24413 * 1 2 3 23 23 H 1.08998 * 109.47078 * 30.24256 * 1 2 3 24 24 H 1.09006 * 109.47321 * 150.23838 * 1 2 3 25 25 H 1.08002 * 125.20558 * 179.97438 * 4 3 2 26 26 H 1.09008 * 109.46681 * 20.02555 * 6 5 4 27 27 H 1.08999 * 109.47262 * 140.01992 * 6 5 4 28 28 H 1.00899 * 111.00164 * 56.03736 * 7 6 5 29 29 H 1.08994 * 109.46978 * 299.99876 * 10 8 7 30 30 H 1.09005 * 109.47027 * 60.00160 * 10 8 7 31 31 H 1.09001 * 109.47114 * 180.02562 * 10 8 7 32 32 H 1.08994 * 109.47189 * 184.99945 * 11 8 7 33 33 H 1.09004 * 109.47108 * 305.00499 * 11 8 7 34 34 H 0.96999 * 120.00086 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.47003 * 270.02484 * 21 20 2 36 36 H 1.09006 * 109.46803 * 30.02274 * 21 20 2 37 37 H 1.09004 * 109.46882 * 150.02050 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5209 1.4372 0.0000 4 6 3.9750 0.4478 -0.0032 5 6 3.6379 -0.8429 0.0028 6 6 4.6622 -1.9482 0.0069 7 7 4.8181 -2.4765 -1.3548 8 6 5.8115 -3.5580 -1.3895 9 1 6.6058 -3.3448 -0.6741 10 6 5.1373 -4.8818 -1.0236 11 6 6.4057 -3.6599 -2.7958 12 6 7.1745 -2.4020 -3.1087 13 1 7.2331 -1.6091 -2.3777 14 6 7.8022 -2.2631 -4.3283 15 7 7.7304 -3.2284 -5.2185 16 14 8.7558 -0.7042 -4.7158 17 1 10.1681 -0.8685 -4.2874 18 1 8.7088 -0.4457 -6.1774 19 1 8.1485 0.4406 -3.9908 20 6 2.2759 -1.0899 0.0046 21 6 1.7051 -2.4847 0.0117 22 1 -0.3634 0.0044 1.0276 23 1 -0.3633 0.8878 -0.5176 24 1 -0.3634 -0.8921 -0.5101 25 1 4.9862 0.8271 -0.0047 26 1 5.6177 -1.5568 0.3564 27 1 4.3321 -2.7470 0.6711 28 1 5.0611 -1.7417 -2.0022 29 1 4.7141 -4.8093 -0.0218 30 1 4.3431 -5.0950 -1.7391 31 1 5.8746 -5.6842 -1.0489 32 1 7.0764 -4.5175 -2.8455 33 1 5.6020 -3.7845 -3.5216 34 1 8.1723 -3.1309 -6.0765 35 1 1.5679 -2.8158 1.0411 36 1 0.7436 -2.4863 -0.5018 37 1 2.3910 -3.1605 -0.4991 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695857981.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:55 Heat of formation + Delta-G solvation = -9.271767 kcal Electronic energy + Delta-G solvation = -16531.872504 eV Core-core repulsion = 14013.057261 eV Total energy + Delta-G solvation = -2518.815244 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.01541 -37.85226 -34.90051 -33.66968 -31.47135 -30.24461 -29.26297 -26.93153 -25.65127 -24.81022 -21.87986 -21.09578 -18.95516 -18.51411 -18.16651 -16.70832 -16.40008 -15.98057 -15.72764 -15.15660 -14.78647 -14.27971 -13.99702 -13.68879 -13.59135 -13.48411 -13.33619 -13.24596 -12.89676 -12.85300 -12.62174 -12.44447 -12.40964 -12.35340 -12.12913 -11.90984 -11.54451 -11.23178 -11.00329 -10.58009 -9.37830 -9.18910 -9.08452 -8.19895 -6.29886 0.10847 0.78151 1.09189 1.37790 1.38497 1.48768 1.74259 2.39015 3.12495 3.61201 3.89579 4.07377 4.29935 4.36797 4.45573 4.54100 4.60427 4.70174 4.70818 4.75355 4.75797 4.79785 4.95027 5.05202 5.13965 5.22257 5.27935 5.32781 5.37448 5.50318 5.55377 5.66681 5.77492 5.84977 6.20855 6.42073 6.61024 6.85243 7.38654 8.91721 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.005784 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.390336 B = 4839.610011 C = 5705.806109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.192 4.192 3 S 0.088 5.912 4 C -0.228 4.228 5 C -0.094 4.094 6 C 0.121 3.879 7 N -0.673 5.673 8 C 0.096 3.904 9 H 0.024 0.976 10 C -0.126 4.126 11 C 0.028 3.972 12 C -0.533 4.533 13 H 0.055 0.945 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.957 3.043 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.266 1.266 20 C -0.102 4.102 21 C -0.092 4.092 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.162 0.838 26 H 0.025 0.975 27 H 0.086 0.914 28 H 0.340 0.660 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.051 0.949 32 H -0.004 1.004 33 H -0.003 1.003 34 H 0.263 0.737 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.328 5.983 12.994 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.309 4.309 3 S 0.354 5.646 4 C -0.364 4.364 5 C -0.107 4.107 6 C -0.010 4.010 7 N -0.305 5.305 8 C -0.014 4.014 9 H 0.042 0.958 10 C -0.184 4.184 11 C -0.009 4.009 12 C -0.571 4.571 13 H 0.073 0.927 14 C -0.193 4.193 15 N -0.570 5.570 16 Si 0.782 3.218 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.190 1.190 20 C -0.114 4.114 21 C -0.151 4.151 22 H 0.105 0.895 23 H 0.092 0.908 24 H 0.104 0.896 25 H 0.180 0.820 26 H 0.043 0.957 27 H 0.105 0.895 28 H 0.159 0.841 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.014 0.986 33 H 0.016 0.984 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.083 7.109 12.881 20.367 hybrid contribution 2.182 -0.274 -0.605 2.281 sum -11.902 6.835 12.276 18.414 Atomic orbital electron populations 1.20410 0.85894 1.03776 1.03561 1.24611 1.01109 0.94607 1.10599 1.83889 0.96465 1.09826 1.74459 1.25573 1.02538 0.96649 1.11616 1.18878 0.94957 0.93959 1.02947 1.20589 0.94429 0.94365 0.91594 1.60620 1.49487 1.13966 1.06454 1.21450 0.91237 0.92014 0.96696 0.95753 1.21705 1.00122 0.95518 1.01093 1.19133 0.94243 0.95471 0.92101 1.21506 1.32151 1.03089 1.00315 0.92693 1.25850 0.97545 0.99544 0.96311 1.70086 1.44974 1.34470 1.07426 0.85565 0.78989 0.79865 0.77332 1.20000 1.20909 1.18995 1.18834 0.91835 0.97397 1.03288 1.20560 1.01030 0.91093 1.02432 0.89486 0.90820 0.89633 0.82017 0.95654 0.89543 0.84104 0.91758 0.93090 0.92950 0.98584 0.98450 0.92852 0.90491 0.90728 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.05 71.24 0.72 -0.58 16 2 C -0.19 -4.62 6.50 24.59 0.16 -4.46 16 3 S 0.09 2.16 23.33 -56.49 -1.32 0.84 16 4 C -0.23 -6.55 10.95 66.72 0.73 -5.82 16 5 C -0.09 -2.83 5.31 -20.92 -0.11 -2.94 16 6 C 0.12 3.86 4.93 85.56 0.42 4.28 16 7 N -0.67 -25.73 6.04 -495.58 -2.99 -28.72 16 8 C 0.10 3.94 2.59 44.92 0.12 4.05 16 9 H 0.02 1.02 7.80 -2.39 -0.02 1.01 16 10 C -0.13 -4.33 9.42 71.98 0.68 -3.66 16 11 C 0.03 1.46 4.57 29.85 0.14 1.60 16 12 C -0.53 -29.68 8.12 25.60 0.21 -29.47 16 13 H 0.05 2.95 7.49 -2.91 -0.02 2.93 16 14 C 0.01 0.33 5.46 84.65 0.46 0.79 16 15 N -0.93 -56.45 13.29 21.44 0.28 -56.16 16 16 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 20 C -0.10 -2.75 5.80 -20.92 -0.12 -2.87 16 21 C -0.09 -2.14 9.33 71.24 0.66 -1.47 16 22 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.09 1.30 6.64 -2.38 -0.02 1.28 16 25 H 0.16 4.43 8.06 -2.91 -0.02 4.40 16 26 H 0.03 0.83 7.98 -2.38 -0.02 0.81 16 27 H 0.09 2.49 6.99 -2.39 -0.02 2.48 16 28 H 0.34 14.80 7.20 -89.69 -0.65 14.15 16 29 H 0.06 1.85 7.45 -2.39 -0.02 1.83 16 30 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.48 6.60 -2.38 -0.02 1.47 16 37 H 0.07 1.84 7.12 -2.38 -0.02 1.82 16 Total: -1.00 -62.43 315.18 2.46 -59.97 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.40 Total: 18.21 kcal Atomic # 6 Polarization: -44.61 SS G_CDS: 4.06 Total: -40.55 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -2.71 Total: -84.88 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.32 Total: 0.84 kcal Total: -62.43 2.46 -59.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695857981.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.697 kcal (2) G-P(sol) polarization free energy of solvation -62.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds