Wall clock time and date at job start Mon Mar 30 2020 06:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30843 * 125.89843 * 2 1 4 4 N 1.40087 * 108.20511 * 180.16447 * 3 2 1 5 5 C 1.46496 * 126.03851 * 179.85061 * 4 3 2 6 6 H 1.08999 * 109.47280 * 179.69449 * 5 4 3 7 7 C 1.52996 * 109.47596 * 299.69518 * 5 4 3 8 8 C 1.52999 * 109.46983 * 59.69477 * 5 4 3 9 9 C 1.50702 * 109.47522 * 175.00096 * 8 5 4 10 10 H 1.08002 * 119.99446 * 359.97438 * 9 8 5 11 11 C 1.37871 * 120.00072 * 180.02562 * 9 8 5 12 12 N 1.31516 * 119.99826 * 179.72119 * 11 9 8 13 13 Si 1.86800 * 120.00406 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46758 * 269.72576 * 13 11 9 15 15 H 1.48499 * 109.47026 * 29.72423 * 13 11 9 16 16 H 1.48496 * 109.47474 * 149.72459 * 13 11 9 17 17 C 1.34952 * 107.92333 * 359.59474 * 4 3 2 18 18 C 1.50697 * 126.12789 * 180.24217 * 17 4 3 19 19 C 1.35314 * 107.74667 * 0.23790 * 17 4 3 20 20 N 1.48020 * 126.04128 * 179.97438 * 19 17 4 21 21 O 1.21800 * 119.99532 * 90.00026 * 20 19 17 22 22 O 1.21796 * 119.99965 * 270.00329 * 20 19 17 23 23 H 1.09000 * 109.47185 * 270.28204 * 1 2 3 24 24 H 1.09002 * 109.47209 * 30.27548 * 1 2 3 25 25 H 1.08994 * 109.47358 * 150.27649 * 1 2 3 26 26 H 1.09001 * 109.47667 * 179.97438 * 7 5 4 27 27 H 1.09008 * 109.47037 * 300.00182 * 7 5 4 28 28 H 1.09007 * 109.47198 * 59.99701 * 7 5 4 29 29 H 1.09000 * 109.47527 * 54.99694 * 8 5 4 30 30 H 1.09001 * 109.47054 * 294.99785 * 8 5 4 31 31 H 0.96999 * 120.00128 * 180.27192 * 12 11 9 32 32 H 1.08999 * 109.47578 * 89.99176 * 18 17 4 33 33 H 1.08994 * 109.47347 * 209.99799 * 18 17 4 34 34 H 1.09009 * 109.46897 * 329.99503 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0038 5 6 4.7899 1.5008 -0.0082 6 1 5.6908 0.8872 -0.0050 7 6 4.7746 2.3776 -1.2618 8 6 4.7744 2.3903 1.2365 9 6 6.0481 3.1935 1.2961 10 1 6.7943 3.0804 0.5235 11 6 6.2613 4.0718 2.3372 12 7 7.3753 4.7686 2.3921 13 14 4.9709 4.2669 3.6738 14 1 4.0235 5.3453 3.2934 15 1 4.2291 2.9906 3.8357 16 1 5.6343 4.6197 4.9546 17 6 3.6142 -0.7153 0.0030 18 6 4.8350 -1.5989 0.0071 19 6 2.3272 -1.1330 0.0055 20 7 1.8682 -2.5402 0.0122 21 8 1.6799 -3.1142 1.0698 22 8 1.6789 -3.1241 -1.0398 23 1 -0.3633 0.0051 1.0276 24 1 -0.3634 0.8875 -0.5181 25 1 -0.3634 -0.8924 -0.5095 26 1 5.6532 3.0228 -1.2649 27 1 4.7856 1.7439 -2.1487 28 1 3.8736 2.9913 -1.2651 29 1 4.6957 1.7673 2.1275 30 1 3.9206 3.0663 1.1894 31 1 7.5270 5.3836 3.1266 32 1 5.1297 -1.8067 1.0357 33 1 4.6074 -2.5354 -0.5019 34 1 5.6510 -1.0935 -0.5096 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695870268.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:35 Heat of formation + Delta-G solvation = 55.586263 kcal Electronic energy + Delta-G solvation = -18836.901096 eV Core-core repulsion = 15774.605093 eV Total energy + Delta-G solvation = -3062.296003 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.34278 -41.24324 -36.35266 -36.03164 -33.50554 -32.59561 -31.37446 -28.92335 -28.12812 -27.37619 -25.41560 -23.54114 -21.26741 -21.02988 -19.50213 -18.68468 -18.10636 -17.40977 -16.82517 -15.83364 -15.66921 -14.43480 -14.17677 -13.89813 -13.65288 -13.41613 -13.17025 -12.83833 -12.62316 -12.40685 -12.17963 -11.88501 -11.55800 -11.44039 -11.42174 -11.17732 -11.03551 -10.78624 -10.50181 -10.38824 -10.06702 -9.55176 -9.35743 -9.02265 -8.78255 -6.29501 -4.31947 0.65964 1.41226 1.44675 2.08985 2.45955 3.16394 3.24695 3.28558 4.08241 4.23461 4.24820 4.54820 4.85871 5.01529 5.10370 5.18218 5.25510 5.34611 5.39549 5.44174 5.56156 5.61209 5.70531 5.92552 6.12681 6.15802 6.46161 6.56672 6.64327 6.87441 6.98011 7.36681 7.44854 7.75723 8.18692 8.68822 9.30446 10.82270 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.028665 B = 0.005795 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.557889 B = 4830.364118 C = 5019.010652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.112 3.888 3 N -0.256 5.256 4 N -0.322 5.322 5 C 0.158 3.842 6 H 0.106 0.894 7 C -0.148 4.148 8 C -0.014 4.014 9 C -0.529 4.529 10 H 0.079 0.921 11 C 0.077 3.923 12 N -0.892 5.892 13 Si 0.876 3.124 14 H -0.274 1.274 15 H -0.267 1.267 16 H -0.284 1.284 17 C 0.155 3.845 18 C -0.109 4.109 19 C -0.201 4.201 20 N 0.057 4.943 21 O -0.146 6.146 22 O -0.150 6.150 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.022 0.978 30 H 0.030 0.970 31 H 0.267 0.733 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.358 -10.291 -5.451 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.056 4.056 3 N -0.078 5.078 4 N -0.101 5.101 5 C 0.060 3.940 6 H 0.124 0.876 7 C -0.206 4.206 8 C -0.052 4.052 9 C -0.567 4.567 10 H 0.097 0.903 11 C -0.126 4.126 12 N -0.529 5.529 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.192 1.192 16 H -0.210 1.210 17 C 0.020 3.980 18 C -0.167 4.167 19 C -0.296 4.296 20 N 0.587 4.413 21 O -0.369 6.369 22 O -0.372 6.372 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.822 -7.985 -5.362 12.397 hybrid contribution -0.679 -0.966 0.837 1.447 sum -8.501 -8.951 -4.525 13.148 Atomic orbital electron populations 1.20328 0.85539 1.04104 1.03995 1.22074 0.97494 0.87207 0.98845 1.77618 0.86406 1.20334 1.23463 1.49475 1.06653 1.03005 1.50931 1.22043 0.80343 0.91284 1.00298 0.87577 1.22055 1.04909 0.99621 0.94020 1.19922 0.99462 0.94856 0.90957 1.20806 1.01908 1.23014 1.10978 0.90261 1.24898 0.95257 0.94856 0.97583 1.69871 1.24727 1.26027 1.32309 0.86831 0.82005 0.79204 0.81646 1.19930 1.19177 1.20982 1.20580 0.94667 0.86460 0.96281 1.20750 0.93030 0.97829 1.05128 1.20314 0.93959 0.81901 1.33398 1.42584 0.97291 1.01578 0.99839 1.94533 1.53869 1.67782 1.20698 1.94515 1.54054 1.67097 1.21520 0.89449 0.89312 0.90603 0.88564 0.93718 0.91564 0.95989 0.95135 0.92270 0.88289 0.89553 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.44 36.01 0.38 -0.58 16 2 C 0.11 1.77 7.22 -82.40 -0.59 1.17 16 3 N -0.26 -4.57 12.43 33.67 0.42 -4.15 16 4 N -0.32 -5.55 3.28 -50.70 -0.17 -5.72 16 5 C 0.16 2.82 3.06 -67.94 -0.21 2.61 16 6 H 0.11 1.71 6.67 -51.93 -0.35 1.36 16 7 C -0.15 -2.45 9.27 37.16 0.34 -2.11 16 8 C -0.01 -0.31 3.77 -27.88 -0.11 -0.41 16 9 C -0.53 -13.51 8.96 -34.44 -0.31 -13.82 16 10 H 0.08 2.10 7.30 -52.49 -0.38 1.72 16 11 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 12 N -0.89 -25.66 13.96 55.43 0.77 -24.88 16 13 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 C 0.16 2.41 6.93 -82.26 -0.57 1.84 16 18 C -0.11 -1.28 9.91 36.00 0.36 -0.93 16 19 C -0.20 -3.24 6.60 -80.38 -0.53 -3.77 16 20 N 0.06 0.91 4.41 33.75 0.15 1.05 16 21 O -0.15 -2.37 19.25 -29.46 -0.57 -2.94 16 22 O -0.15 -2.37 19.25 -29.46 -0.57 -2.94 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.10 1.66 6.95 -51.93 -0.36 1.30 16 27 H 0.04 0.64 8.14 -51.92 -0.42 0.21 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 30 H 0.03 0.71 7.57 -51.93 -0.39 0.31 16 31 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.95 7.10 -51.92 -0.37 0.59 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -29.52 300.52 -5.79 -35.31 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.35 Total: -2.47 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -1.34 Total: -13.99 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 1.17 Total: -33.70 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -1.13 Total: -5.87 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.52 -5.79 -35.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695870268.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.893 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds