Wall clock time and date at job start Mon Mar 30 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30843 * 125.89843 * 2 1 4 4 N 1.40087 * 108.20511 * 180.16447 * 3 2 1 5 5 C 1.46496 * 126.03851 * 179.85061 * 4 3 2 6 6 H 1.08999 * 109.47280 * 179.69449 * 5 4 3 7 7 C 1.52996 * 109.47596 * 299.69518 * 5 4 3 8 8 C 1.52999 * 109.46983 * 59.69477 * 5 4 3 9 9 C 1.50702 * 109.47522 * 175.00096 * 8 5 4 10 10 H 1.08002 * 119.99446 * 359.97438 * 9 8 5 11 11 C 1.37871 * 120.00072 * 180.02562 * 9 8 5 12 12 N 1.31516 * 119.99826 * 179.72119 * 11 9 8 13 13 Si 1.86800 * 120.00406 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46758 * 269.72576 * 13 11 9 15 15 H 1.48499 * 109.47026 * 29.72423 * 13 11 9 16 16 H 1.48496 * 109.47474 * 149.72459 * 13 11 9 17 17 C 1.34952 * 107.92333 * 359.59474 * 4 3 2 18 18 C 1.50697 * 126.12789 * 180.24217 * 17 4 3 19 19 C 1.35314 * 107.74667 * 0.23790 * 17 4 3 20 20 N 1.48020 * 126.04128 * 179.97438 * 19 17 4 21 21 O 1.21800 * 119.99532 * 90.00026 * 20 19 17 22 22 O 1.21796 * 119.99965 * 270.00329 * 20 19 17 23 23 H 1.09000 * 109.47185 * 270.28204 * 1 2 3 24 24 H 1.09002 * 109.47209 * 30.27548 * 1 2 3 25 25 H 1.08994 * 109.47358 * 150.27649 * 1 2 3 26 26 H 1.09001 * 109.47667 * 179.97438 * 7 5 4 27 27 H 1.09008 * 109.47037 * 300.00182 * 7 5 4 28 28 H 1.09007 * 109.47198 * 59.99701 * 7 5 4 29 29 H 1.09000 * 109.47527 * 54.99694 * 8 5 4 30 30 H 1.09001 * 109.47054 * 294.99785 * 8 5 4 31 31 H 0.96999 * 120.00128 * 180.27192 * 12 11 9 32 32 H 1.08999 * 109.47578 * 89.99176 * 18 17 4 33 33 H 1.08994 * 109.47347 * 209.99799 * 18 17 4 34 34 H 1.09009 * 109.46897 * 329.99503 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0038 5 6 4.7899 1.5008 -0.0082 6 1 5.6908 0.8872 -0.0050 7 6 4.7746 2.3776 -1.2618 8 6 4.7744 2.3903 1.2365 9 6 6.0481 3.1935 1.2961 10 1 6.7943 3.0804 0.5235 11 6 6.2613 4.0718 2.3372 12 7 7.3753 4.7686 2.3921 13 14 4.9709 4.2669 3.6738 14 1 4.0235 5.3453 3.2934 15 1 4.2291 2.9906 3.8357 16 1 5.6343 4.6197 4.9546 17 6 3.6142 -0.7153 0.0030 18 6 4.8350 -1.5989 0.0071 19 6 2.3272 -1.1330 0.0055 20 7 1.8682 -2.5402 0.0122 21 8 1.6799 -3.1142 1.0698 22 8 1.6789 -3.1241 -1.0398 23 1 -0.3633 0.0051 1.0276 24 1 -0.3634 0.8875 -0.5181 25 1 -0.3634 -0.8924 -0.5095 26 1 5.6532 3.0228 -1.2649 27 1 4.7856 1.7439 -2.1487 28 1 3.8736 2.9913 -1.2651 29 1 4.6957 1.7673 2.1275 30 1 3.9206 3.0663 1.1894 31 1 7.5270 5.3836 3.1266 32 1 5.1297 -1.8067 1.0357 33 1 4.6074 -2.5354 -0.5019 34 1 5.6510 -1.0935 -0.5096 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695870268.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:34 Heat of formation + Delta-G solvation = 39.043792 kcal Electronic energy + Delta-G solvation = -18837.618432 eV Core-core repulsion = 15774.605093 eV Total energy + Delta-G solvation = -3063.013338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.56677 -42.48089 -37.59287 -37.50151 -34.98789 -34.15680 -32.72247 -30.09439 -29.68964 -28.58577 -26.64583 -25.20579 -22.73255 -22.25384 -20.77544 -19.91630 -19.38169 -19.24343 -18.11937 -17.22714 -16.97590 -16.29016 -15.54293 -15.18813 -14.90229 -14.55496 -14.45665 -14.13264 -13.74189 -13.63639 -13.43756 -13.29930 -13.09012 -12.87527 -12.79876 -12.64636 -12.28849 -12.20927 -12.11132 -11.90541 -11.85242 -11.51166 -10.85906 -10.58748 -10.32730 -8.37880 -6.42222 -0.58818 0.17234 0.22728 0.89531 1.21158 1.26971 1.31160 1.38830 2.25971 2.97198 3.00238 3.07041 3.44586 3.76427 3.83424 3.95224 4.16401 4.29231 4.33188 4.42419 4.47539 4.58786 4.62840 4.76974 4.82034 4.91147 4.99265 5.08641 5.22684 5.29342 5.40211 5.62247 6.10399 6.16535 6.50930 6.63942 7.22775 8.76752 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.028665 B = 0.005795 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.557889 B = 4830.364118 C = 5019.010652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.114 3.886 3 N -0.291 5.291 4 N -0.335 5.335 5 C 0.166 3.834 6 H 0.126 0.874 7 C -0.141 4.141 8 C -0.007 4.007 9 C -0.521 4.521 10 H 0.062 0.938 11 C 0.024 3.976 12 N -0.935 5.935 13 Si 0.930 3.070 14 H -0.271 1.271 15 H -0.263 1.263 16 H -0.280 1.280 17 C 0.161 3.839 18 C -0.112 4.112 19 C -0.219 4.219 20 N 0.063 4.937 21 O -0.158 6.158 22 O -0.143 6.143 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.013 0.987 30 H 0.019 0.981 31 H 0.269 0.731 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 -11.554 -5.754 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.054 4.054 3 N -0.112 5.112 4 N -0.114 5.114 5 C 0.067 3.933 6 H 0.143 0.857 7 C -0.198 4.198 8 C -0.045 4.045 9 C -0.559 4.559 10 H 0.080 0.920 11 C -0.175 4.175 12 N -0.575 5.575 13 Si 0.756 3.244 14 H -0.196 1.196 15 H -0.188 1.188 16 H -0.206 1.206 17 C 0.026 3.974 18 C -0.170 4.170 19 C -0.313 4.313 20 N 0.593 4.407 21 O -0.378 6.378 22 O -0.368 6.368 23 H 0.118 0.882 24 H 0.121 0.879 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.839 -9.264 -5.643 13.993 hybrid contribution -0.385 -0.645 0.850 1.134 sum -9.224 -9.909 -4.793 14.361 Atomic orbital electron populations 1.20506 0.83092 1.05288 1.05114 1.22694 0.99047 0.86660 0.97033 1.77588 0.86862 1.21532 1.25236 1.49271 1.06318 1.03550 1.52281 1.21799 0.81557 0.91394 0.98542 0.85669 1.21956 1.03705 0.99552 0.94624 1.19733 0.97005 0.94845 0.92950 1.21078 1.02616 1.22450 1.09766 0.91960 1.25636 0.96860 0.95083 0.99904 1.69981 1.26640 1.27417 1.33431 0.85962 0.79857 0.79213 0.79403 1.19587 1.18750 1.20596 1.21147 0.95823 0.86025 0.94412 1.20960 0.92039 0.97793 1.06182 1.20495 0.94477 0.82019 1.34338 1.42530 0.97060 1.01438 0.99712 1.94540 1.54537 1.67907 1.20841 1.94510 1.53650 1.67085 1.21524 0.88242 0.87923 0.89613 0.89757 0.91145 0.92660 0.96842 0.96276 0.92218 0.87291 0.88344 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 10.44 71.24 0.74 -1.01 16 2 C 0.11 3.40 7.22 43.10 0.31 3.71 16 3 N -0.29 -9.97 12.43 -47.38 -0.59 -10.56 16 4 N -0.34 -11.01 3.28 -314.32 -1.03 -12.04 16 5 C 0.17 5.66 3.06 44.99 0.14 5.80 16 6 H 0.13 3.76 6.67 -2.39 -0.02 3.74 16 7 C -0.14 -4.48 9.27 71.98 0.67 -3.81 16 8 C -0.01 -0.31 3.77 29.85 0.11 -0.20 16 9 C -0.52 -26.62 8.96 25.60 0.23 -26.39 16 10 H 0.06 3.34 7.30 -2.91 -0.02 3.31 16 11 C 0.02 1.32 5.47 84.65 0.46 1.79 16 12 N -0.93 -54.44 13.96 21.45 0.30 -54.14 16 13 Si 0.93 42.92 27.47 68.60 1.88 44.80 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.26 -11.84 6.54 99.48 0.65 -11.19 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 C 0.16 4.64 6.93 41.40 0.29 4.93 16 18 C -0.11 -2.31 9.91 71.24 0.71 -1.61 16 19 C -0.22 -6.60 6.60 36.10 0.24 -6.36 16 20 N 0.06 1.85 4.41 -47.13 -0.21 1.65 16 21 O -0.16 -4.85 19.25 18.89 0.36 -4.49 16 22 O -0.14 -4.19 19.25 18.89 0.36 -3.83 16 23 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.08 2.87 6.95 -2.39 -0.02 2.86 16 27 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 30 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 31 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.11 1.91 7.10 -2.38 -0.02 1.89 16 Total: -1.00 -62.33 300.52 6.03 -56.29 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 1.05 Total: 5.47 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 3.90 Total: -23.15 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -1.53 Total: -75.09 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.73 Total: -8.32 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.80 kcal Total: -62.33 6.03 -56.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695870268.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.338 kcal (2) G-P(sol) polarization free energy of solvation -62.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds