Wall clock time and date at job start Mon Mar 30 2020 06:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38199 * 119.98656 * 2 1 4 4 C 1.38592 * 120.03639 * 180.23575 * 3 2 1 5 5 O 1.36051 * 119.98583 * 179.76544 * 4 3 2 6 6 C 1.42905 * 117.00284 * 5.47149 * 5 4 3 7 7 H 1.09005 * 109.46630 * 35.06269 * 6 5 4 8 8 C 1.53000 * 109.46725 * 275.06930 * 6 5 4 9 9 C 1.52992 * 109.47318 * 155.06734 * 6 5 4 10 10 C 1.50707 * 109.46913 * 294.99923 * 9 6 5 11 11 H 1.07999 * 120.00087 * 359.97438 * 10 9 6 12 12 C 1.37877 * 119.99818 * 180.02562 * 10 9 6 13 13 N 1.31516 * 120.00163 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99934 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47147 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46992 * 120.00411 * 14 12 10 17 17 H 1.48503 * 109.47281 * 239.99976 * 14 12 10 18 18 C 1.38924 * 120.02198 * 359.48281 * 4 3 2 19 19 F 1.35108 * 120.00613 * 180.28020 * 18 4 3 20 20 C 1.38242 * 119.98476 * 0.26227 * 18 4 3 21 21 C 1.38819 * 119.99173 * 179.72184 * 2 1 3 22 22 N 1.39933 * 120.01001 * 0.04250 * 21 2 1 23 23 H 1.09003 * 109.47151 * 270.27961 * 1 2 3 24 24 H 1.09000 * 109.47322 * 30.27777 * 1 2 3 25 25 H 1.09001 * 109.47445 * 150.27951 * 1 2 3 26 26 H 1.07998 * 119.98297 * 359.97013 * 3 2 1 27 27 H 1.08999 * 109.47411 * 299.98898 * 8 6 5 28 28 H 1.08997 * 109.47511 * 59.99829 * 8 6 5 29 29 H 1.09012 * 109.46791 * 179.97438 * 8 6 5 30 30 H 1.08994 * 109.47471 * 54.99938 * 9 6 5 31 31 H 1.09003 * 109.46912 * 175.00308 * 9 6 5 32 32 H 0.96996 * 120.00047 * 180.02562 * 13 12 10 33 33 H 1.08001 * 120.02358 * 179.97438 * 20 18 4 34 34 H 0.97000 * 119.99471 * 179.97438 * 22 21 2 35 35 H 0.96995 * 119.99697 * 359.97438 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1970 0.0000 4 6 3.5836 1.1982 -0.0049 5 8 4.2625 2.3772 -0.0098 6 6 3.4884 3.5722 0.1120 7 1 2.6391 3.3894 0.7704 8 6 2.9818 3.9944 -1.2686 9 6 4.3581 4.6858 0.6986 10 6 4.7561 4.3235 2.1063 11 1 4.4218 3.3923 2.5393 12 6 5.5463 5.1813 2.8417 13 7 5.9522 6.3160 2.3149 14 14 6.0390 4.7326 4.5867 15 1 5.4569 3.4135 4.9418 16 1 7.5194 4.6613 4.6802 17 1 5.5331 5.7663 5.5253 18 6 4.2798 -0.0040 0.0010 19 9 5.6308 -0.0024 0.0019 20 6 3.5898 -1.2019 0.0063 21 6 2.2009 -1.2023 0.0058 22 7 1.5013 -2.4142 0.0108 23 1 -0.3633 0.0050 1.0277 24 1 -0.3634 0.8875 -0.5181 25 1 -0.3634 -0.8925 -0.5095 26 1 1.6572 2.1320 -0.0005 27 1 3.8310 4.1773 -1.9270 28 1 2.3621 3.2011 -1.6865 29 1 2.3908 4.9058 -1.1757 30 1 5.2528 4.8079 0.0881 31 1 3.7952 5.6191 0.7090 32 1 6.5084 6.9193 2.8322 33 1 4.1303 -2.1369 0.0105 34 1 1.9864 -3.2541 0.0145 35 1 0.5313 -2.4141 0.0106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695908208.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:03 Heat of formation + Delta-G solvation = -93.459126 kcal Electronic energy + Delta-G solvation = -18651.013893 eV Core-core repulsion = 15562.334836 eV Total energy + Delta-G solvation = -3088.679058 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -49.74194 -41.10253 -39.23740 -35.67563 -34.59685 -33.52081 -32.87185 -29.54253 -29.13020 -27.30804 -25.29268 -24.13905 -22.33002 -21.59964 -19.12922 -18.60064 -18.44025 -18.10328 -16.79879 -16.63105 -16.30559 -15.94010 -15.71788 -15.42070 -15.11827 -14.62843 -14.27276 -14.07168 -13.79486 -13.45844 -13.42728 -13.16874 -12.95595 -12.85290 -12.68337 -12.57486 -12.35791 -12.12751 -11.82960 -11.29667 -11.20853 -10.60199 -10.49022 -9.67792 -8.22322 -8.07969 -6.30781 0.16424 0.56091 1.35357 1.37478 1.50194 2.39245 2.44368 2.69892 2.93034 3.12229 3.49950 3.79224 3.95848 4.05166 4.20027 4.28188 4.43488 4.59245 4.64808 4.75771 4.86470 4.88188 4.93975 5.05281 5.14418 5.20392 5.29461 5.37070 5.45754 5.51002 5.74993 5.77417 6.18709 6.54003 6.73548 6.81354 7.07563 7.36492 8.89889 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.005970 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.051223 B = 4689.233710 C = 5005.203885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.133 4.133 3 C -0.144 4.144 4 C 0.029 3.971 5 O -0.325 6.325 6 C 0.095 3.905 7 H 0.068 0.932 8 C -0.166 4.166 9 C 0.028 3.972 10 C -0.530 4.530 11 H 0.048 0.952 12 C 0.003 3.997 13 N -0.930 5.930 14 Si 0.959 3.041 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.269 1.269 18 C 0.068 3.932 19 F -0.154 7.154 20 C -0.194 4.194 21 C 0.207 3.793 22 N -0.859 5.859 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.145 0.855 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.084 0.916 30 H -0.006 1.006 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.157 0.843 34 H 0.408 0.592 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.672 -16.677 -5.801 22.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.138 4.138 3 C -0.163 4.163 4 C -0.019 4.019 5 O -0.240 6.240 6 C 0.039 3.961 7 H 0.086 0.914 8 C -0.223 4.223 9 C -0.009 4.009 10 C -0.568 4.568 11 H 0.066 0.934 12 C -0.194 4.194 13 N -0.571 5.571 14 Si 0.784 3.216 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.194 1.194 18 C 0.048 3.952 19 F -0.132 7.132 20 C -0.218 4.218 21 C 0.101 3.899 22 N -0.403 5.403 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.163 0.837 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.013 0.987 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.174 0.826 34 H 0.238 0.762 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -13.320 -16.450 -5.785 21.943 hybrid contribution 0.943 0.115 0.848 1.273 sum -12.377 -16.335 -4.937 21.080 Atomic orbital electron populations 1.20698 0.88045 1.04027 1.03200 1.19578 0.97885 0.90191 1.06107 1.21061 0.90949 1.00065 1.04261 1.19276 0.92283 0.85803 1.04539 1.86235 1.37114 1.12612 1.88044 1.22581 0.93853 0.82789 0.96872 0.91435 1.22311 1.01506 1.02674 0.95856 1.19126 0.94475 0.92594 0.94739 1.21475 1.31530 1.04234 0.99546 0.93409 1.25852 0.95915 0.94900 1.02763 1.70067 1.36889 1.11232 1.38898 0.85487 0.78053 0.78466 0.79612 1.19432 1.20502 1.19442 1.17151 0.76351 0.92752 1.08990 1.91420 1.29956 1.97392 1.94480 1.20398 0.93568 0.96159 1.11636 1.17122 0.89531 0.87691 0.95555 1.42336 1.09387 1.03714 1.84868 0.90370 0.90606 0.89627 0.83710 0.92901 0.90791 0.89761 0.98713 0.95324 0.92656 0.82567 0.76207 0.75817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 9.57 71.24 0.68 -0.88 16 2 C -0.13 -3.18 5.90 -19.74 -0.12 -3.29 16 3 C -0.14 -4.49 7.89 22.34 0.18 -4.32 16 4 C 0.03 1.13 6.61 22.52 0.15 1.28 16 5 O -0.33 -15.45 9.42 -94.13 -0.89 -16.34 16 6 C 0.09 4.15 2.17 30.59 0.07 4.22 16 7 H 0.07 2.81 6.31 -2.38 -0.02 2.79 16 8 C -0.17 -5.73 9.17 71.98 0.66 -5.07 16 9 C 0.03 1.51 4.68 29.85 0.14 1.65 16 10 C -0.53 -31.85 8.88 25.60 0.23 -31.62 16 11 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 12 C 0.00 0.20 5.46 84.65 0.46 0.67 16 13 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 14 Si 0.96 46.65 29.54 68.60 2.03 48.67 16 15 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 C 0.07 2.53 7.30 22.44 0.16 2.70 16 19 F -0.15 -6.46 17.11 44.97 0.77 -5.69 16 20 C -0.19 -5.34 9.87 22.43 0.22 -5.11 16 21 C 0.21 4.65 6.74 38.14 0.26 4.91 16 22 N -0.86 -11.14 9.00 -51.28 -0.46 -11.60 16 23 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 24 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 25 H 0.09 0.85 6.54 -2.39 -0.02 0.83 16 26 H 0.15 4.21 5.41 -2.91 -0.02 4.19 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.07 2.15 6.91 -2.39 -0.02 2.14 16 29 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 30 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 34 H 0.41 3.74 8.84 -92.71 -0.82 2.92 16 35 H 0.41 3.50 6.82 -92.71 -0.63 2.87 16 Total: -1.00 -74.02 297.64 4.49 -69.53 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -0.33 Total: 7.93 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 3.09 Total: -34.88 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.18 Total: -69.22 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.89 Total: -16.34 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.77 Total: -5.69 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -74.02 4.49 -69.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695908208.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.931 kcal (2) G-P(sol) polarization free energy of solvation -74.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds