Wall clock time and date at job start Mon Mar 30 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38186 * 119.99229 * 2 1 4 4 C 1.38596 * 120.04306 * 180.25473 * 3 2 1 5 5 O 1.36046 * 119.98829 * 179.76846 * 4 3 2 6 6 C 1.42901 * 117.00553 * 354.52418 * 5 4 3 7 7 H 1.09007 * 109.46422 * 324.93392 * 6 5 4 8 8 C 1.53000 * 109.47342 * 84.92707 * 6 5 4 9 9 C 1.53002 * 109.47521 * 204.93175 * 6 5 4 10 10 C 1.50703 * 109.47033 * 64.99729 * 9 6 5 11 11 H 1.08008 * 119.99776 * 0.02562 * 10 9 6 12 12 C 1.37872 * 119.99915 * 179.97438 * 10 9 6 13 13 N 1.31511 * 119.99943 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99952 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47001 * 90.00332 * 14 12 10 16 16 H 1.48497 * 109.46958 * 210.00472 * 14 12 10 17 17 H 1.48502 * 109.47084 * 330.00437 * 14 12 10 18 18 C 1.38924 * 120.01859 * 359.49133 * 4 3 2 19 19 F 1.35100 * 120.00564 * 180.23309 * 18 4 3 20 20 C 1.38248 * 119.98274 * 0.25199 * 18 4 3 21 21 C 1.38829 * 119.98841 * 179.74570 * 2 1 3 22 22 N 1.39932 * 120.00959 * 0.02562 * 21 2 1 23 23 H 1.09004 * 109.47386 * 270.25509 * 1 2 3 24 24 H 1.08996 * 109.47050 * 30.25339 * 1 2 3 25 25 H 1.09001 * 109.47244 * 150.25661 * 1 2 3 26 26 H 1.07996 * 119.98353 * 0.02562 * 3 2 1 27 27 H 1.08999 * 109.47388 * 180.02562 * 8 6 5 28 28 H 1.09002 * 109.47281 * 300.00917 * 8 6 5 29 29 H 1.09005 * 109.46493 * 60.00480 * 8 6 5 30 30 H 1.08997 * 109.47012 * 305.00248 * 9 6 5 31 31 H 1.08996 * 109.47037 * 184.99334 * 9 6 5 32 32 H 0.97007 * 119.99909 * 180.02562 * 13 12 10 33 33 H 1.08004 * 120.02114 * 179.97438 * 20 18 4 34 34 H 0.97005 * 119.99415 * 179.97438 * 22 21 2 35 35 H 0.96999 * 120.00293 * 359.97438 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1968 0.0000 4 6 3.5837 1.1981 -0.0053 5 8 4.2626 2.3770 -0.0101 6 6 3.4877 3.5716 -0.1308 7 1 2.6336 3.3862 -0.7823 8 6 2.9911 3.9992 1.2517 9 6 4.3532 4.6829 -0.7281 10 6 4.7410 4.3151 -2.1372 11 1 4.4034 3.3822 -2.5641 12 6 5.5257 5.1700 -2.8817 13 7 5.9362 6.3062 -2.3619 14 14 6.0069 4.7138 -4.6281 15 1 4.9841 5.2283 -5.5738 16 1 7.3261 5.3143 -4.9508 17 1 6.0930 3.2361 -4.7478 18 6 4.2798 -0.0042 0.0000 19 9 5.6308 -0.0027 -0.0004 20 6 3.5897 -1.2021 0.0054 21 6 2.2009 -1.2024 0.0053 22 7 1.5012 -2.4142 0.0102 23 1 -0.3634 0.0046 1.0277 24 1 -0.3633 0.8877 -0.5177 25 1 -0.3634 -0.8923 -0.5098 26 1 1.6574 2.1319 0.0004 27 1 2.3996 4.9102 1.1596 28 1 2.3745 3.2075 1.6773 29 1 3.8452 4.1845 1.9032 30 1 5.2523 4.8072 -0.1246 31 1 3.7902 5.6162 -0.7381 32 1 6.4880 6.9079 -2.8859 33 1 4.1302 -2.1371 0.0091 34 1 1.9863 -3.2543 0.0135 35 1 0.5312 -2.4142 0.0102 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695908213.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:07 Heat of formation + Delta-G solvation = -72.034801 kcal Electronic energy + Delta-G solvation = -18649.430244 eV Core-core repulsion = 15561.680215 eV Total energy + Delta-G solvation = -3087.750029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.31471 -39.80700 -37.90040 -34.05296 -33.06376 -32.26300 -31.28896 -28.24894 -27.36543 -26.26224 -23.41839 -22.76510 -21.08085 -20.02069 -17.78644 -17.42378 -16.78667 -16.30827 -15.39405 -15.21624 -14.82163 -14.49792 -14.42572 -13.95885 -13.67812 -13.58442 -12.92407 -12.60185 -12.15369 -12.04657 -11.86511 -11.77380 -11.67730 -11.44137 -11.25764 -10.79982 -10.70678 -10.49527 -10.06845 -9.54176 -9.26794 -8.98405 -8.50252 -8.34139 -6.94627 -5.97153 -3.97946 1.34770 1.78015 3.36004 3.42238 3.48393 3.75700 3.84996 3.99311 4.50773 4.69046 4.88578 5.01084 5.20906 5.40117 5.54438 5.57080 5.62372 5.70178 5.77173 5.83843 5.97420 6.03986 6.17374 6.29398 6.36292 6.52822 6.65675 6.80291 6.87091 7.41976 7.54881 7.64784 7.73680 7.99705 8.19687 8.41810 9.05533 9.65192 11.14381 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.005965 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.133366 B = 4693.269079 C = 5002.138264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.136 4.136 3 C -0.143 4.143 4 C 0.072 3.928 5 O -0.287 6.287 6 C 0.087 3.913 7 H 0.061 0.939 8 C -0.178 4.178 9 C 0.025 3.975 10 C -0.512 4.512 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.101 3.899 19 F -0.132 7.132 20 C -0.195 4.195 21 C 0.192 3.808 22 N -0.881 5.881 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.140 0.860 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.038 0.962 32 H 0.260 0.740 33 H 0.133 0.867 34 H 0.395 0.605 35 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.154 -14.383 6.364 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.141 4.141 3 C -0.162 4.162 4 C 0.023 3.977 5 O -0.200 6.200 6 C 0.032 3.968 7 H 0.079 0.921 8 C -0.235 4.235 9 C -0.011 4.011 10 C -0.550 4.550 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.537 5.537 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C 0.080 3.920 19 F -0.110 7.110 20 C -0.218 4.218 21 C 0.089 3.911 22 N -0.424 5.424 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.157 0.843 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.151 0.849 34 H 0.222 0.778 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -10.751 -14.106 6.339 18.835 hybrid contribution 0.248 -0.448 -1.013 1.135 sum -10.503 -14.553 5.326 18.721 Atomic orbital electron populations 1.20579 0.91167 1.02395 1.01822 1.19144 0.95750 0.91062 1.08118 1.20923 0.92251 0.98552 1.04509 1.18949 0.90807 0.86883 1.01043 1.86349 1.35428 1.11385 1.86796 1.22855 0.95217 0.84014 0.94753 0.92077 1.22420 1.01485 1.01157 0.98442 1.19264 0.95139 0.90799 0.95927 1.21126 1.31499 1.04491 0.97894 0.92617 1.24965 0.95963 0.95025 0.98377 1.69950 1.36394 1.10288 1.37072 0.86592 0.77851 0.78815 0.84816 1.20717 1.21181 1.19789 1.16663 0.76954 0.91506 1.06857 1.91489 1.28315 1.97227 1.94009 1.20182 0.92665 0.96686 1.12280 1.17028 0.89978 0.86306 0.97766 1.42365 1.08596 1.04611 1.86821 0.91596 0.91298 0.92249 0.84288 0.91423 0.93329 0.91896 0.95263 0.94378 0.92992 0.84887 0.77755 0.77458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.57 36.00 0.34 -0.66 16 2 C -0.14 -1.83 5.90 -104.42 -0.62 -2.44 16 3 C -0.14 -2.30 7.89 -39.47 -0.31 -2.61 16 4 C 0.07 1.39 6.61 -39.20 -0.26 1.13 16 5 O -0.29 -6.49 9.42 -19.89 -0.19 -6.68 16 6 C 0.09 1.85 2.17 -26.73 -0.06 1.80 16 7 H 0.06 1.24 6.31 -51.92 -0.33 0.92 16 8 C -0.18 -3.06 9.17 37.16 0.34 -2.72 16 9 C 0.03 0.67 4.68 -27.88 -0.13 0.53 16 10 C -0.51 -14.85 8.88 -34.44 -0.31 -15.16 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 14 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 18 C 0.10 1.84 7.30 -39.32 -0.29 1.56 16 19 F -0.13 -2.64 17.11 2.25 0.04 -2.60 16 20 C -0.19 -2.83 9.87 -39.34 -0.39 -3.22 16 21 C 0.19 2.47 6.74 -83.70 -0.56 1.90 16 22 N -0.88 -7.72 9.00 32.44 0.29 -7.43 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 25 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 26 H 0.14 2.10 5.41 -52.49 -0.28 1.82 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.73 6.91 -51.93 -0.36 0.37 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 34 H 0.39 2.72 8.84 -40.82 -0.36 2.35 16 35 H 0.40 2.74 6.82 -40.82 -0.28 2.46 16 LS Contribution 297.64 15.07 4.49 4.49 Total: -1.00 -32.56 297.64 -6.43 -39.00 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.45 Total: 0.65 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -2.33 Total: -18.29 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 1.03 Total: -33.93 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.19 Total: -6.68 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.56 -6.43 -39.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695908213.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.038 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds