Wall clock time and date at job start Mon Mar 30 2020 06:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38186 * 119.99229 * 2 1 4 4 C 1.38596 * 120.04306 * 180.25473 * 3 2 1 5 5 O 1.36046 * 119.98829 * 179.76846 * 4 3 2 6 6 C 1.42901 * 117.00553 * 354.52418 * 5 4 3 7 7 H 1.09007 * 109.46422 * 324.93392 * 6 5 4 8 8 C 1.53000 * 109.47342 * 84.92707 * 6 5 4 9 9 C 1.53002 * 109.47521 * 204.93175 * 6 5 4 10 10 C 1.50703 * 109.47033 * 64.99729 * 9 6 5 11 11 H 1.08008 * 119.99776 * 0.02562 * 10 9 6 12 12 C 1.37872 * 119.99915 * 179.97438 * 10 9 6 13 13 N 1.31511 * 119.99943 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99952 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47001 * 90.00332 * 14 12 10 16 16 H 1.48497 * 109.46958 * 210.00472 * 14 12 10 17 17 H 1.48502 * 109.47084 * 330.00437 * 14 12 10 18 18 C 1.38924 * 120.01859 * 359.49133 * 4 3 2 19 19 F 1.35100 * 120.00564 * 180.23309 * 18 4 3 20 20 C 1.38248 * 119.98274 * 0.25199 * 18 4 3 21 21 C 1.38829 * 119.98841 * 179.74570 * 2 1 3 22 22 N 1.39932 * 120.00959 * 0.02562 * 21 2 1 23 23 H 1.09004 * 109.47386 * 270.25509 * 1 2 3 24 24 H 1.08996 * 109.47050 * 30.25339 * 1 2 3 25 25 H 1.09001 * 109.47244 * 150.25661 * 1 2 3 26 26 H 1.07996 * 119.98353 * 0.02562 * 3 2 1 27 27 H 1.08999 * 109.47388 * 180.02562 * 8 6 5 28 28 H 1.09002 * 109.47281 * 300.00917 * 8 6 5 29 29 H 1.09005 * 109.46493 * 60.00480 * 8 6 5 30 30 H 1.08997 * 109.47012 * 305.00248 * 9 6 5 31 31 H 1.08996 * 109.47037 * 184.99334 * 9 6 5 32 32 H 0.97007 * 119.99909 * 180.02562 * 13 12 10 33 33 H 1.08004 * 120.02114 * 179.97438 * 20 18 4 34 34 H 0.97005 * 119.99415 * 179.97438 * 22 21 2 35 35 H 0.96999 * 120.00293 * 359.97438 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1968 0.0000 4 6 3.5837 1.1981 -0.0053 5 8 4.2626 2.3770 -0.0101 6 6 3.4877 3.5716 -0.1308 7 1 2.6336 3.3862 -0.7823 8 6 2.9911 3.9992 1.2517 9 6 4.3532 4.6829 -0.7281 10 6 4.7410 4.3151 -2.1372 11 1 4.4034 3.3822 -2.5641 12 6 5.5257 5.1700 -2.8817 13 7 5.9362 6.3062 -2.3619 14 14 6.0069 4.7138 -4.6281 15 1 4.9841 5.2283 -5.5738 16 1 7.3261 5.3143 -4.9508 17 1 6.0930 3.2361 -4.7478 18 6 4.2798 -0.0042 0.0000 19 9 5.6308 -0.0027 -0.0004 20 6 3.5897 -1.2021 0.0054 21 6 2.2009 -1.2024 0.0053 22 7 1.5012 -2.4142 0.0102 23 1 -0.3634 0.0046 1.0277 24 1 -0.3633 0.8877 -0.5177 25 1 -0.3634 -0.8923 -0.5098 26 1 1.6574 2.1319 0.0004 27 1 2.3996 4.9102 1.1596 28 1 2.3745 3.2075 1.6773 29 1 3.8452 4.1845 1.9032 30 1 5.2523 4.8072 -0.1246 31 1 3.7902 5.6162 -0.7381 32 1 6.4880 6.9079 -2.8859 33 1 4.1302 -2.1371 0.0091 34 1 1.9863 -3.2543 0.0135 35 1 0.5312 -2.4142 0.0102 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695908213.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:06 Heat of formation + Delta-G solvation = -93.420675 kcal Electronic energy + Delta-G solvation = -18650.357605 eV Core-core repulsion = 15561.680215 eV Total energy + Delta-G solvation = -3088.677390 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.74467 -41.10333 -39.23797 -35.67526 -34.59659 -33.52061 -32.87237 -29.54265 -29.12925 -27.30803 -25.29084 -24.13927 -22.33049 -21.59832 -19.12983 -18.59946 -18.43738 -18.10413 -16.80389 -16.63016 -16.30313 -15.94113 -15.71847 -15.41590 -15.12023 -14.63975 -14.26053 -14.06679 -13.79847 -13.46050 -13.42980 -13.15826 -12.98793 -12.81496 -12.66606 -12.57779 -12.37749 -12.13696 -11.82915 -11.29746 -11.21955 -10.59531 -10.48873 -9.67734 -8.22105 -8.07922 -6.30668 0.16406 0.56149 1.35581 1.38222 1.49420 2.39337 2.44657 2.69603 2.92903 3.12414 3.50035 3.79166 3.95787 4.05118 4.19894 4.28140 4.43530 4.59378 4.64714 4.75625 4.86657 4.88169 4.93916 5.05344 5.14509 5.20319 5.29408 5.37047 5.45689 5.51018 5.74916 5.77430 6.18765 6.54047 6.73543 6.81254 7.07578 7.36564 8.89884 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.005965 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.133366 B = 4693.269079 C = 5002.138264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.132 4.132 3 C -0.144 4.144 4 C 0.029 3.971 5 O -0.325 6.325 6 C 0.094 3.906 7 H 0.068 0.932 8 C -0.166 4.166 9 C 0.028 3.972 10 C -0.531 4.531 11 H 0.048 0.952 12 C 0.004 3.996 13 N -0.930 5.930 14 Si 0.959 3.041 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.274 1.274 18 C 0.068 3.932 19 F -0.154 7.154 20 C -0.194 4.194 21 C 0.207 3.793 22 N -0.859 5.859 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.145 0.855 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.052 0.948 30 H -0.006 1.006 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.157 0.843 34 H 0.408 0.592 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.652 -16.639 5.958 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.137 4.137 3 C -0.163 4.163 4 C -0.019 4.019 5 O -0.240 6.240 6 C 0.039 3.961 7 H 0.086 0.914 8 C -0.223 4.223 9 C -0.009 4.009 10 C -0.569 4.569 11 H 0.066 0.934 12 C -0.194 4.194 13 N -0.571 5.571 14 Si 0.783 3.217 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.199 1.199 18 C 0.047 3.953 19 F -0.133 7.133 20 C -0.218 4.218 21 C 0.101 3.899 22 N -0.403 5.403 23 H 0.103 0.897 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.163 0.837 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.013 0.987 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.174 0.826 34 H 0.238 0.762 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -13.294 -16.411 5.940 21.939 hybrid contribution 0.930 0.105 -0.855 1.268 sum -12.364 -16.306 5.085 21.085 Atomic orbital electron populations 1.20698 0.88037 1.03811 1.03414 1.19578 0.97889 0.90189 1.06085 1.21057 0.90936 1.00068 1.04276 1.19276 0.92292 0.85801 1.04523 1.86233 1.37051 1.12646 1.88080 1.22583 0.93870 0.82795 0.96853 0.91415 1.22310 1.01543 1.02657 0.95836 1.19121 0.94484 0.92606 0.94685 1.21447 1.31866 1.04208 0.99388 0.93405 1.25849 0.95835 0.94913 1.02799 1.70063 1.36971 1.11240 1.38790 0.85543 0.78054 0.78301 0.79766 1.18950 1.20408 1.19924 1.17151 0.76346 0.92751 1.09026 1.91417 1.29972 1.97391 1.94482 1.20398 0.93571 0.96151 1.11640 1.17120 0.89524 0.87690 0.95565 1.42338 1.09388 1.03713 1.84867 0.89729 0.90995 0.89871 0.83714 0.89756 0.90798 0.92908 0.98727 0.95333 0.92653 0.82574 0.76210 0.75811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 9.57 71.24 0.68 -0.88 16 2 C -0.13 -3.17 5.90 -19.74 -0.12 -3.29 16 3 C -0.14 -4.49 7.89 22.34 0.18 -4.32 16 4 C 0.03 1.13 6.61 22.52 0.15 1.28 16 5 O -0.33 -15.47 9.42 -94.07 -0.89 -16.36 16 6 C 0.09 4.15 2.17 30.60 0.07 4.22 16 7 H 0.07 2.81 6.31 -2.38 -0.02 2.80 16 8 C -0.17 -5.74 9.17 71.98 0.66 -5.08 16 9 C 0.03 1.53 4.68 29.85 0.14 1.67 16 10 C -0.53 -31.93 8.88 25.60 0.23 -31.70 16 11 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 12 C 0.00 0.23 5.46 84.65 0.46 0.69 16 13 N -0.93 -57.92 13.29 21.44 0.28 -57.64 16 14 Si 0.96 46.62 29.54 68.60 2.03 48.64 16 15 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 18 C 0.07 2.52 7.30 22.44 0.16 2.69 16 19 F -0.15 -6.48 17.11 44.97 0.77 -5.71 16 20 C -0.19 -5.34 9.87 22.43 0.22 -5.12 16 21 C 0.21 4.65 6.74 38.14 0.26 4.91 16 22 N -0.86 -11.13 9.00 -51.28 -0.46 -11.60 16 23 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 25 H 0.08 0.87 6.54 -2.39 -0.02 0.86 16 26 H 0.15 4.21 5.41 -2.91 -0.02 4.19 16 27 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.07 2.15 6.91 -2.39 -0.02 2.14 16 29 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 30 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 31 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 33 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 34 H 0.41 3.74 8.84 -92.70 -0.82 2.92 16 35 H 0.41 3.49 6.82 -92.71 -0.63 2.86 16 Total: -1.00 -74.05 297.64 4.49 -69.55 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -0.33 Total: 8.01 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 3.09 Total: -34.91 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.18 Total: -69.23 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.89 Total: -16.36 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 0.77 Total: -5.71 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.64 kcal Total: -74.05 4.49 -69.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695908213.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.867 kcal (2) G-P(sol) polarization free energy of solvation -74.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds