Wall clock time and date at job start Mon Mar 30 2020 06:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38281 * 119.93585 * 2 1 4 4 C 1.38652 * 120.00592 * 179.70555 * 3 2 1 5 5 N 1.40104 * 120.06346 * 180.02562 * 4 3 2 6 6 C 1.39332 * 119.86629 * 0.02562 * 4 3 2 7 7 O 1.36010 * 120.06075 * 180.02562 * 6 4 3 8 8 C 1.42902 * 116.99518 * 185.46166 * 7 6 4 9 9 H 1.08993 * 109.47802 * 35.06428 * 8 7 6 10 10 C 1.53007 * 109.47170 * 275.06146 * 8 7 6 11 11 C 1.53000 * 109.47056 * 155.06740 * 8 7 6 12 12 C 1.50705 * 109.47010 * 294.99846 * 11 8 7 13 13 H 1.07999 * 119.99807 * 359.97438 * 12 11 8 14 14 C 1.37876 * 119.99675 * 180.02562 * 12 11 8 15 15 N 1.31508 * 120.00640 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99292 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47376 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46781 * 120.00173 * 16 14 12 19 19 H 1.48498 * 109.46853 * 239.99511 * 16 14 12 20 20 C 1.38472 * 119.86979 * 0.02562 * 6 4 3 21 21 C 1.38402 * 119.92769 * 179.72835 * 2 1 3 22 22 F 1.35094 * 119.93709 * 0.25026 * 21 2 1 23 23 H 1.08996 * 109.47315 * 89.99192 * 1 2 3 24 24 H 1.08996 * 109.47235 * 209.99759 * 1 2 3 25 25 H 1.09005 * 109.46842 * 329.99886 * 1 2 3 26 26 H 1.07997 * 119.99641 * 359.72628 * 3 2 1 27 27 H 0.96996 * 120.00558 * 359.97438 * 5 4 3 28 28 H 0.97010 * 119.99705 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.47065 * 300.00233 * 10 8 7 30 30 H 1.08999 * 109.46942 * 60.00446 * 10 8 7 31 31 H 1.09002 * 109.47004 * 180.02562 * 10 8 7 32 32 H 1.09005 * 109.47488 * 54.99615 * 11 8 7 33 33 H 1.08998 * 109.47386 * 174.99854 * 11 8 7 34 34 H 0.96997 * 120.00234 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.00134 * 179.97438 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1983 0.0000 4 6 3.5836 1.2000 0.0062 5 7 4.2840 2.4134 0.0067 6 6 4.2789 -0.0074 0.0118 7 8 5.6390 -0.0103 0.0184 8 6 6.2855 -1.2795 -0.0973 9 1 5.7028 -1.9257 -0.7537 10 6 6.3955 -1.9238 1.2862 11 6 7.6858 -1.0871 -0.6829 12 6 7.5735 -0.5669 -2.0929 13 1 6.6006 -0.3916 -2.5278 14 6 8.7127 -0.3159 -2.8278 15 7 9.8973 -0.5299 -2.2984 16 14 8.5733 0.3282 -4.5758 17 1 7.1405 0.4838 -4.9332 18 1 9.2532 1.6448 -4.6738 19 1 9.2157 -0.6313 -5.5095 20 6 3.5825 -1.2042 0.0107 21 6 2.1975 -1.1995 0.0057 22 9 1.5193 -2.3678 0.0061 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6560 2.1330 -0.0045 27 1 3.7990 3.2534 0.0024 28 1 5.2541 2.4135 0.0114 29 1 6.9783 -1.2777 1.9426 30 1 5.3979 -2.0609 1.7035 31 1 6.8890 -2.8917 1.1980 32 1 8.2389 -0.3713 -0.0746 33 1 8.2116 -2.0418 -0.6887 34 1 10.6987 -0.3536 -2.8156 35 1 4.1193 -2.1414 0.0147 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695909339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:15 Heat of formation + Delta-G solvation = -95.243062 kcal Electronic energy + Delta-G solvation = -18651.594756 eV Core-core repulsion = 15562.838341 eV Total energy + Delta-G solvation = -3088.756415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 4.84 seconds Orbital eigenvalues (eV) -49.72077 -41.19943 -38.79343 -35.65876 -35.21753 -33.38099 -32.54058 -29.50990 -29.25427 -27.22254 -25.24620 -24.24097 -22.27594 -21.60579 -19.36159 -18.55196 -18.37904 -17.52617 -16.99232 -16.63685 -16.50547 -15.98473 -15.78144 -15.21982 -15.10133 -14.45363 -14.13674 -13.93398 -13.86592 -13.70679 -13.57071 -13.29959 -12.93263 -12.77242 -12.67852 -12.55695 -12.27126 -12.06838 -11.73937 -11.33898 -11.17782 -10.95421 -10.59732 -9.42181 -8.21792 -8.09016 -6.30313 0.31585 0.43872 1.36986 1.38118 1.50877 2.38234 2.39324 2.71263 3.03513 3.12998 3.45630 3.78894 3.95893 4.03311 4.19173 4.29242 4.41346 4.48904 4.66119 4.78917 4.85600 4.92873 5.00066 5.02325 5.16212 5.18989 5.24965 5.40656 5.44731 5.48369 5.76031 5.89268 6.18041 6.39014 6.75878 6.81942 7.07248 7.37279 8.90120 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023353 B = 0.005909 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.715704 B = 4737.630300 C = 5046.489943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.179 3.821 5 N -0.864 5.864 6 C 0.065 3.935 7 O -0.310 6.310 8 C 0.097 3.903 9 H 0.058 0.942 10 C -0.167 4.167 11 C 0.030 3.970 12 C -0.527 4.527 13 H 0.049 0.951 14 C 0.006 3.994 15 N -0.930 5.930 16 Si 0.958 3.042 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.276 1.276 20 C -0.210 4.210 21 C 0.050 3.950 22 F -0.149 7.149 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.168 0.832 27 H 0.411 0.589 28 H 0.402 0.598 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.003 0.997 33 H 0.023 0.977 34 H 0.264 0.736 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.756 3.642 5.861 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.112 4.112 3 C -0.165 4.165 4 C 0.073 3.927 5 N -0.405 5.405 6 C 0.016 3.984 7 O -0.224 6.224 8 C 0.041 3.959 9 H 0.076 0.924 10 C -0.225 4.225 11 C -0.007 4.007 12 C -0.565 4.565 13 H 0.067 0.933 14 C -0.192 4.192 15 N -0.570 5.570 16 Si 0.784 3.216 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.230 4.230 21 C 0.028 3.972 22 F -0.128 7.128 23 H 0.098 0.902 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.185 0.815 27 H 0.241 0.759 28 H 0.231 0.769 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.022 0.978 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.469 3.736 5.847 17.872 hybrid contribution 0.754 -0.121 -0.906 1.185 sum -15.716 3.616 4.941 16.866 Atomic orbital electron populations 1.20706 0.88079 1.03960 1.03340 1.19842 0.98147 0.90523 1.02656 1.20408 0.89832 0.98861 1.07429 1.17455 0.91547 0.84900 0.98749 1.42316 1.09457 1.04152 1.84618 1.18605 0.83595 0.92910 1.03334 1.86103 1.14981 1.33558 1.87794 1.22516 0.94397 0.82494 0.96469 0.92439 1.22305 1.02501 1.01461 0.96197 1.19103 0.90144 0.96502 0.94906 1.21435 0.92335 1.43441 0.99287 0.93287 1.25809 0.94985 0.95891 1.02505 1.70061 0.98049 1.50093 1.38799 0.85497 0.78214 0.78206 0.79730 1.19438 1.20217 1.20185 1.21057 0.93791 0.98466 1.09723 1.17127 0.88823 0.81524 1.09691 1.91397 1.79976 1.46789 1.94679 0.90249 0.91627 0.88904 0.81477 0.75872 0.76930 0.92113 0.91551 0.90290 0.97848 0.95935 0.92694 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 9.83 71.24 0.70 -1.16 16 2 C -0.11 -2.79 5.89 -19.81 -0.12 -2.90 16 3 C -0.14 -3.41 9.54 22.38 0.21 -3.20 16 4 C 0.18 5.38 6.77 38.18 0.26 5.64 16 5 N -0.86 -22.31 9.10 -51.00 -0.46 -22.77 16 6 C 0.06 2.35 6.62 22.59 0.15 2.50 16 7 O -0.31 -12.97 8.80 -93.66 -0.82 -13.79 16 8 C 0.10 4.10 2.17 30.60 0.07 4.17 16 9 H 0.06 2.44 6.32 -2.39 -0.02 2.43 16 10 C -0.17 -5.74 9.17 71.98 0.66 -5.08 16 11 C 0.03 1.59 4.68 29.85 0.14 1.73 16 12 C -0.53 -30.07 8.88 25.60 0.23 -29.85 16 13 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 14 C 0.01 0.35 5.46 84.66 0.46 0.81 16 15 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 16 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 C -0.21 -7.23 8.22 22.39 0.18 -7.04 16 21 C 0.05 1.53 7.24 22.37 0.16 1.70 16 22 F -0.15 -4.61 16.46 44.97 0.74 -3.87 16 23 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.19 7.62 -2.39 -0.02 1.17 16 25 H 0.09 1.18 8.08 -2.38 -0.02 1.16 16 26 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 27 H 0.41 7.44 8.85 -92.71 -0.82 6.62 16 28 H 0.40 11.81 8.19 -92.70 -0.76 11.05 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.07 2.04 6.91 -2.39 -0.02 2.02 16 31 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 33 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.14 4.63 5.42 -2.91 -0.02 4.62 16 Total: -1.00 -65.69 299.18 4.41 -61.28 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.46 Total: 20.55 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 3.11 Total: -32.70 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -0.18 Total: -78.26 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.82 Total: -13.79 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.74 Total: -3.87 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -65.69 4.41 -61.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695909339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.961 kcal (2) G-P(sol) polarization free energy of solvation -65.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.84 seconds