Wall clock time and date at job start Mon Mar 30 2020 06:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99836 * 2 1 4 4 C 1.53004 * 109.47071 * 297.91209 * 3 2 1 5 5 C 1.50701 * 115.55024 * 305.65448 * 4 3 2 6 6 H 1.07999 * 120.00057 * 118.17170 * 5 4 3 7 7 C 1.37879 * 119.99707 * 297.89540 * 5 4 3 8 8 N 1.31511 * 119.99752 * 172.70597 * 7 5 4 9 9 Si 1.86803 * 119.99966 * 352.71006 * 7 5 4 10 10 H 1.48494 * 109.47012 * 94.04339 * 9 7 5 11 11 H 1.48502 * 109.46618 * 214.03996 * 9 7 5 12 12 H 1.48497 * 109.47062 * 334.04065 * 9 7 5 13 13 C 1.53001 * 117.49623 * 91.32131 * 4 3 2 14 14 C 1.53005 * 117.50024 * 159.97922 * 4 3 2 15 15 O 1.46301 * 111.00227 * 123.94820 * 2 1 3 16 16 C 1.42892 * 114.00136 * 120.78780 * 15 2 1 17 17 C 1.52997 * 109.47600 * 184.97648 * 16 15 2 18 18 F 1.39904 * 109.46852 * 60.00191 * 17 16 15 19 19 F 1.39898 * 109.47558 * 180.02562 * 17 16 15 20 20 F 1.39903 * 109.46983 * 300.00107 * 17 16 15 21 21 H 1.09000 * 109.46819 * 66.49336 * 1 2 3 22 22 H 1.08999 * 109.46873 * 186.48920 * 1 2 3 23 23 H 1.08994 * 109.47402 * 306.49002 * 1 2 3 24 24 H 1.08999 * 109.47244 * 177.91372 * 3 2 1 25 25 H 1.09000 * 109.47325 * 57.91419 * 3 2 1 26 26 H 0.96997 * 119.99753 * 180.02562 * 8 7 5 27 27 H 1.09006 * 117.49937 * 215.00284 * 13 4 3 28 28 H 1.08995 * 117.50083 * 0.02633 * 13 4 3 29 29 H 1.08997 * 117.49383 * 359.97438 * 14 4 3 30 30 H 1.08995 * 117.49493 * 144.97458 * 14 4 3 31 31 H 1.09003 * 109.47157 * 304.98123 * 16 15 2 32 32 H 1.09005 * 109.47149 * 64.97782 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5478 2.0895 -1.2747 5 6 1.8858 1.3915 -2.5668 6 1 1.0960 1.0688 -3.2290 7 6 3.2036 1.1699 -2.9064 8 7 3.4974 0.4372 -3.9582 9 14 4.5718 1.9103 -1.8722 10 1 5.0154 0.9215 -0.8571 11 1 5.7163 2.2678 -2.7483 12 1 4.0712 3.1303 -1.1893 13 6 0.2369 2.8765 -1.2189 14 6 1.5743 3.6194 -1.2702 15 8 1.9934 -0.7627 1.1330 16 6 2.8255 -1.8623 0.7582 17 6 3.2134 -2.6572 2.0066 18 9 2.0575 -3.1386 2.6306 19 9 4.0285 -3.7333 1.6398 20 9 3.9092 -1.8260 2.8911 21 1 -0.3633 0.4099 -0.9424 22 1 -0.3633 -1.0211 0.1161 23 1 -0.3634 0.6111 0.8261 24 1 3.0844 1.3426 0.0374 25 1 1.6160 1.9063 0.8707 26 1 4.4245 0.2810 -4.1968 27 1 -0.3811 2.8894 -2.1168 28 1 -0.3064 2.8830 -0.2740 29 1 1.9103 4.1141 -0.3590 30 1 1.8367 4.1208 -2.2017 31 1 2.2834 -2.5098 0.0690 32 1 3.7261 -1.4872 0.2720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704749283.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:51 Heat of formation + Delta-G solvation = -120.255036 kcal Electronic energy + Delta-G solvation = -19678.927362 eV Core-core repulsion = 16034.856817 eV Total energy + Delta-G solvation = -3644.070545 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.99316 -47.55037 -47.45759 -37.94051 -36.35995 -33.05144 -32.12929 -28.88925 -27.43542 -25.48907 -23.20532 -22.34511 -21.61326 -19.02975 -18.48651 -18.48394 -17.46510 -16.52119 -16.33191 -15.23220 -14.87500 -14.44351 -14.31674 -14.15144 -13.93406 -13.79028 -13.65040 -13.64330 -13.27387 -13.14031 -12.78028 -12.32347 -12.06437 -11.63592 -11.33112 -11.02931 -10.68787 -10.48630 -10.29348 -9.92642 -9.54061 -9.19192 -8.71797 -8.49045 -8.15563 -6.11926 -4.10636 2.29444 3.16270 3.24253 3.36341 3.40563 4.02488 4.16412 4.31631 4.40087 4.79424 5.17341 5.35643 5.40409 5.56865 5.66466 5.70818 5.87952 5.91310 6.02796 6.08401 6.33525 6.37689 6.47455 6.62292 6.86200 7.03114 7.19134 7.34673 7.71608 8.46436 8.89646 9.52113 11.00093 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.022811 B = 0.007753 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.202721 B = 3610.739503 C = 4159.634614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C 0.075 3.925 4 C 0.006 3.994 5 C -0.470 4.470 6 H 0.078 0.922 7 C 0.086 3.914 8 N -0.894 5.894 9 Si 0.863 3.137 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.253 1.253 13 C -0.187 4.187 14 C -0.188 4.188 15 O -0.280 6.280 16 C 0.035 3.965 17 C 0.460 3.540 18 F -0.181 7.181 19 F -0.178 7.178 20 F -0.180 7.180 21 H 0.106 0.894 22 H 0.067 0.933 23 H 0.027 0.973 24 H 0.072 0.928 25 H 0.027 0.973 26 H 0.264 0.736 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 -2.977 9.816 10.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.085 5.085 3 C -0.053 4.053 4 C 0.004 3.996 5 C -0.507 4.507 6 H 0.096 0.904 7 C -0.117 4.117 8 N -0.531 5.531 9 Si 0.691 3.309 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.177 1.177 13 C -0.224 4.224 14 C -0.226 4.226 15 O -0.279 6.279 16 C -0.044 4.044 17 C 0.405 3.595 18 F -0.162 7.162 19 F -0.159 7.159 20 F -0.162 7.162 21 H 0.124 0.876 22 H 0.086 0.914 23 H 0.046 0.954 24 H 0.090 0.910 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.967 -3.290 9.545 10.285 hybrid contribution 0.744 0.592 1.314 1.622 sum -1.222 -2.697 10.858 11.255 Atomic orbital electron populations 1.22777 0.86091 1.01780 1.02488 1.67930 1.07790 1.13467 1.19286 1.22295 1.00037 0.86019 0.96944 1.19302 0.96950 0.89192 0.94127 1.20097 0.93169 1.36588 1.00862 0.90444 1.24817 0.98359 0.93902 0.94621 1.69892 1.18910 1.37347 1.26900 0.87107 0.82134 0.81073 0.80584 1.20649 1.21924 1.17671 1.22908 0.91049 1.07651 1.00805 1.23111 1.01045 0.97317 1.01169 1.90564 1.67367 1.42668 1.27351 1.23157 0.98995 0.90881 0.91406 1.20463 0.74757 0.78423 0.85879 1.93185 1.49465 1.88962 1.84608 1.93189 1.73728 1.57365 1.91641 1.93192 1.79867 1.71622 1.71519 0.87568 0.91384 0.95407 0.91027 0.95482 0.92624 0.89418 0.91052 0.91326 0.89134 0.88116 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.38 60.07 0.56 0.85 16 2 N -0.31 -6.26 4.81 -121.13 -0.58 -6.85 16 3 C 0.07 1.56 4.97 -3.82 -0.02 1.54 16 4 C 0.01 0.13 0.27 -155.65 -0.04 0.09 16 5 C -0.47 -12.19 9.08 -34.44 -0.31 -12.50 16 6 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 7 C 0.09 2.33 5.46 -17.82 -0.10 2.23 16 8 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 9 Si 0.86 20.65 24.84 -169.99 -4.22 16.43 16 10 H -0.28 -6.64 7.04 56.52 0.40 -6.24 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.25 -5.70 5.88 56.52 0.33 -5.37 16 13 C -0.19 -3.46 8.44 -26.69 -0.23 -3.69 16 14 C -0.19 -3.73 8.33 -26.69 -0.22 -3.95 16 15 O -0.28 -5.26 10.49 -13.92 -0.15 -5.41 16 16 C 0.04 0.58 6.40 37.16 0.24 0.81 16 17 C 0.46 6.85 3.32 37.16 0.12 6.97 16 18 F -0.18 -2.71 17.26 2.25 0.04 -2.67 16 19 F -0.18 -2.51 17.32 2.25 0.04 -2.47 16 20 F -0.18 -2.86 17.26 2.25 0.04 -2.82 16 21 H 0.11 1.85 6.59 -51.93 -0.34 1.51 16 22 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.03 0.43 8.10 -51.93 -0.42 0.01 16 24 H 0.07 1.59 4.85 -51.93 -0.25 1.34 16 25 H 0.03 0.52 8.07 -51.93 -0.42 0.10 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 31 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 282.57 15.07 4.26 4.26 Total: -1.00 -28.09 282.57 -3.82 -31.91 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.02 Total: 0.44 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 0.01 Total: -7.64 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.19 Total: -32.03 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.15 Total: -5.41 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 0.12 Total: -7.96 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.22 Total: 16.43 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.09 -3.82 -31.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704749283.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.348 kcal (2) G-P(sol) polarization free energy of solvation -28.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds