Wall clock time and date at job start Mon Mar 30 2020 06:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99836 * 2 1 4 4 C 1.53004 * 109.47071 * 297.91209 * 3 2 1 5 5 C 1.50701 * 115.55024 * 305.65448 * 4 3 2 6 6 H 1.07999 * 120.00057 * 118.17170 * 5 4 3 7 7 C 1.37879 * 119.99707 * 297.89540 * 5 4 3 8 8 N 1.31511 * 119.99752 * 172.70597 * 7 5 4 9 9 Si 1.86803 * 119.99966 * 352.71006 * 7 5 4 10 10 H 1.48494 * 109.47012 * 94.04339 * 9 7 5 11 11 H 1.48502 * 109.46618 * 214.03996 * 9 7 5 12 12 H 1.48497 * 109.47062 * 334.04065 * 9 7 5 13 13 C 1.53001 * 117.49623 * 91.32131 * 4 3 2 14 14 C 1.53005 * 117.50024 * 159.97922 * 4 3 2 15 15 O 1.46301 * 111.00227 * 123.94820 * 2 1 3 16 16 C 1.42892 * 114.00136 * 120.78780 * 15 2 1 17 17 C 1.52997 * 109.47600 * 184.97648 * 16 15 2 18 18 F 1.39904 * 109.46852 * 60.00191 * 17 16 15 19 19 F 1.39898 * 109.47558 * 180.02562 * 17 16 15 20 20 F 1.39903 * 109.46983 * 300.00107 * 17 16 15 21 21 H 1.09000 * 109.46819 * 66.49336 * 1 2 3 22 22 H 1.08999 * 109.46873 * 186.48920 * 1 2 3 23 23 H 1.08994 * 109.47402 * 306.49002 * 1 2 3 24 24 H 1.08999 * 109.47244 * 177.91372 * 3 2 1 25 25 H 1.09000 * 109.47325 * 57.91419 * 3 2 1 26 26 H 0.96997 * 119.99753 * 180.02562 * 8 7 5 27 27 H 1.09006 * 117.49937 * 215.00284 * 13 4 3 28 28 H 1.08995 * 117.50083 * 0.02633 * 13 4 3 29 29 H 1.08997 * 117.49383 * 359.97438 * 14 4 3 30 30 H 1.08995 * 117.49493 * 144.97458 * 14 4 3 31 31 H 1.09003 * 109.47157 * 304.98123 * 16 15 2 32 32 H 1.09005 * 109.47149 * 64.97782 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5478 2.0895 -1.2747 5 6 1.8858 1.3915 -2.5668 6 1 1.0960 1.0688 -3.2290 7 6 3.2036 1.1699 -2.9064 8 7 3.4974 0.4372 -3.9582 9 14 4.5718 1.9103 -1.8722 10 1 5.0154 0.9215 -0.8571 11 1 5.7163 2.2678 -2.7483 12 1 4.0712 3.1303 -1.1893 13 6 0.2369 2.8765 -1.2189 14 6 1.5743 3.6194 -1.2702 15 8 1.9934 -0.7627 1.1330 16 6 2.8255 -1.8623 0.7582 17 6 3.2134 -2.6572 2.0066 18 9 2.0575 -3.1386 2.6306 19 9 4.0285 -3.7333 1.6398 20 9 3.9092 -1.8260 2.8911 21 1 -0.3633 0.4099 -0.9424 22 1 -0.3633 -1.0211 0.1161 23 1 -0.3634 0.6111 0.8261 24 1 3.0844 1.3426 0.0374 25 1 1.6160 1.9063 0.8707 26 1 4.4245 0.2810 -4.1968 27 1 -0.3811 2.8894 -2.1168 28 1 -0.3064 2.8830 -0.2740 29 1 1.9103 4.1141 -0.3590 30 1 1.8367 4.1208 -2.2017 31 1 2.2834 -2.5098 0.0690 32 1 3.7261 -1.4872 0.2720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704749283.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:50 Heat of formation + Delta-G solvation = -137.753927 kcal Electronic energy + Delta-G solvation = -19679.686171 eV Core-core repulsion = 16034.856817 eV Total energy + Delta-G solvation = -3644.829354 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.19909 -48.73887 -48.67715 -39.50142 -37.84426 -34.52973 -34.13475 -30.20677 -28.96745 -27.40292 -24.53366 -23.77734 -23.13856 -20.81480 -19.71557 -19.69942 -18.73772 -18.28193 -17.83450 -16.96848 -16.35186 -15.79310 -15.61185 -15.54906 -15.29930 -15.13142 -14.89865 -14.85366 -14.84607 -14.58335 -14.56499 -13.87462 -13.57266 -13.11150 -12.95197 -12.62618 -12.35293 -12.12294 -11.98055 -11.49195 -11.27550 -10.95455 -10.54924 -10.28907 -9.62512 -8.20131 -6.20405 0.95582 1.34369 1.42012 1.51219 1.88656 2.41842 2.76698 2.94245 2.99521 3.13036 3.37840 3.88394 4.10177 4.12330 4.21964 4.27804 4.39992 4.48566 4.55384 4.65928 4.82936 4.92489 5.05733 5.07667 5.28455 5.52987 5.68287 5.84862 5.89742 6.39583 6.81959 7.45106 8.95571 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.022811 B = 0.007753 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.202721 B = 3610.739503 C = 4159.634614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.340 5.340 3 C 0.080 3.920 4 C -0.021 4.021 5 C -0.457 4.457 6 H 0.038 0.962 7 C 0.035 3.965 8 N -0.944 5.944 9 Si 0.913 3.087 10 H -0.278 1.278 11 H -0.301 1.301 12 H -0.228 1.228 13 C -0.162 4.162 14 C -0.184 4.184 15 O -0.282 6.282 16 C 0.031 3.969 17 C 0.473 3.527 18 F -0.179 7.179 19 F -0.171 7.171 20 F -0.185 7.185 21 H 0.097 0.903 22 H 0.081 0.919 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.262 0.738 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 -2.119 11.877 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.111 5.111 3 C -0.048 4.048 4 C -0.023 4.023 5 C -0.495 4.495 6 H 0.056 0.944 7 C -0.163 4.163 8 N -0.585 5.585 9 Si 0.740 3.260 10 H -0.205 1.205 11 H -0.229 1.229 12 H -0.150 1.150 13 C -0.199 4.199 14 C -0.222 4.222 15 O -0.283 6.283 16 C -0.049 4.049 17 C 0.417 3.583 18 F -0.160 7.160 19 F -0.153 7.153 20 F -0.166 7.166 21 H 0.115 0.885 22 H 0.100 0.900 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.560 -2.413 11.624 12.145 hybrid contribution 0.822 0.274 0.647 1.081 sum -1.738 -2.139 12.271 12.577 Atomic orbital electron populations 1.22782 0.84420 1.03088 1.02638 1.67854 1.09515 1.13339 1.20380 1.22132 0.99098 0.86711 0.96882 1.19161 1.00422 0.90142 0.92576 1.20217 0.91848 1.35489 1.01924 0.94412 1.25488 1.00695 0.94532 0.95602 1.70031 1.19131 1.39973 1.29319 0.86291 0.79253 0.81347 0.79119 1.20479 1.22904 1.15008 1.22952 0.90170 1.04484 1.02256 1.23145 1.01788 0.95374 1.01922 1.90531 1.67657 1.43150 1.26937 1.23253 0.98508 0.90681 0.92425 1.20117 0.74736 0.78270 0.85133 1.93191 1.49417 1.88897 1.84498 1.93206 1.73534 1.56957 1.91570 1.93186 1.79973 1.71856 1.71596 0.88487 0.90022 0.93605 0.92737 0.93330 0.92920 0.89735 0.87973 0.88886 0.90101 0.87094 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.38 127.69 1.20 1.77 16 2 N -0.34 -12.96 4.81 -537.14 -2.59 -15.55 16 3 C 0.08 3.11 4.97 86.30 0.43 3.54 16 4 C -0.02 -0.88 0.27 -52.92 -0.01 -0.90 16 5 C -0.46 -23.86 9.08 25.60 0.23 -23.63 16 6 H 0.04 2.21 8.06 -2.91 -0.02 2.19 16 7 C 0.03 1.90 5.46 84.66 0.46 2.36 16 8 N -0.94 -56.55 13.96 21.45 0.30 -56.25 16 9 Si 0.91 42.42 24.84 68.60 1.70 44.13 16 10 H -0.28 -12.74 7.04 99.48 0.70 -12.04 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 12 H -0.23 -9.49 5.88 99.48 0.59 -8.91 16 13 C -0.16 -5.47 8.44 30.62 0.26 -5.22 16 14 C -0.18 -6.70 8.33 30.62 0.26 -6.44 16 15 O -0.28 -10.06 10.49 -50.16 -0.53 -10.59 16 16 C 0.03 0.97 6.40 71.98 0.46 1.43 16 17 C 0.47 13.28 3.32 71.98 0.24 13.51 16 18 F -0.18 -5.00 17.26 44.97 0.78 -4.22 16 19 F -0.17 -4.55 17.32 44.97 0.78 -3.77 16 20 F -0.18 -5.53 17.26 44.97 0.78 -4.75 16 21 H 0.10 3.22 6.59 -2.39 -0.02 3.21 16 22 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 24 H 0.05 2.29 4.85 -2.39 -0.01 2.28 16 25 H 0.05 1.68 8.07 -2.39 -0.02 1.66 16 26 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 27 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 28 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 Total: -1.00 -60.01 282.57 5.74 -54.27 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.00 Total: 10.31 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 3.52 Total: -13.57 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -2.29 Total: -71.80 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.53 Total: -10.59 kcal Atomic # 9 Polarization: -15.08 SS G_CDS: 2.33 Total: -12.75 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.70 Total: 44.13 kcal Total: -60.01 5.74 -54.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704749283.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.485 kcal (2) G-P(sol) polarization free energy of solvation -60.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds