Wall clock time and date at job start Mon Mar 30 2020 07:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33389 * 125.20249 * 2 1 4 4 C 1.38429 * 114.92086 * 179.74582 * 3 2 1 5 5 C 1.33390 * 114.91857 * 0.43277 * 4 3 2 6 6 C 1.50702 * 125.20150 * 179.85750 * 5 4 3 7 7 H 1.08994 * 109.47108 * 339.71938 * 6 5 4 8 8 C 1.52999 * 109.46865 * 99.71671 * 6 5 4 9 9 N 1.46893 * 109.47112 * 219.71748 * 6 5 4 10 10 C 1.46903 * 111.00106 * 147.88126 * 9 6 5 11 11 H 1.09004 * 109.46632 * 343.91625 * 10 9 6 12 12 C 1.52999 * 109.47172 * 103.91570 * 10 9 6 13 13 C 1.53003 * 109.46951 * 223.91916 * 10 9 6 14 14 C 1.50703 * 109.47093 * 64.99418 * 13 10 9 15 15 H 1.07992 * 120.00117 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99876 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99929 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00375 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46868 * 90.00040 * 18 16 14 20 20 H 1.48490 * 109.47665 * 210.00479 * 18 16 14 21 21 H 1.48502 * 109.46985 * 330.00651 * 18 16 14 22 22 S 1.75883 * 125.20440 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.46924 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47442 * 300.00659 * 1 2 3 25 25 H 1.09005 * 109.47094 * 60.00583 * 1 2 3 26 26 H 1.08000 * 122.53840 * 359.97317 * 3 2 1 27 27 H 1.07999 * 122.53981 * 180.27147 * 4 3 2 28 28 H 1.08994 * 109.47230 * 180.44935 * 8 6 5 29 29 H 1.08995 * 109.47213 * 300.45155 * 8 6 5 30 30 H 1.08998 * 109.47244 * 60.45238 * 8 6 5 31 31 H 1.00897 * 111.00357 * 23.92538 * 9 6 5 32 32 H 1.08998 * 109.46556 * 179.83716 * 12 10 9 33 33 H 1.08995 * 109.47091 * 299.84156 * 12 10 9 34 34 H 1.09001 * 109.46936 * 59.84376 * 12 10 9 35 35 H 1.08991 * 109.46939 * 184.99799 * 13 10 9 36 36 H 1.08999 * 109.47145 * 304.99756 * 13 10 9 37 37 H 0.97002 * 120.00114 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0056 5 6 3.9751 -0.4477 0.0010 6 6 5.3861 -0.9771 0.0023 7 1 6.0657 -0.2007 -0.3488 8 6 5.7743 -1.3901 1.4234 9 7 5.4726 -2.1427 -0.8874 10 6 6.7980 -2.2287 -1.5150 11 1 7.3129 -1.2738 -1.4088 12 6 7.6152 -3.3275 -0.8325 13 6 6.6385 -2.5597 -3.0003 14 6 5.9406 -1.4199 -3.6967 15 1 5.6412 -0.5467 -3.1363 16 6 5.6852 -1.4916 -5.0498 17 7 6.0503 -2.5548 -5.7324 18 14 4.8209 -0.0787 -5.9133 19 1 5.8308 0.8915 -6.4075 20 1 4.0370 -0.6043 -7.0597 21 1 3.9078 0.6003 -4.9591 22 16 2.5209 -1.4371 0.0006 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 1.8668 2.0895 -0.0004 27 1 4.3720 1.6350 0.0105 28 1 6.7976 -1.7656 1.4259 29 1 5.7024 -0.5271 2.0851 30 1 5.0996 -2.1722 1.7716 31 1 4.7433 -2.1207 -1.5843 32 1 8.5976 -3.3931 -1.3001 33 1 7.7312 -3.0902 0.2250 34 1 7.0989 -4.2818 -0.9363 35 1 7.6213 -2.7109 -3.4464 36 1 6.0466 -3.4685 -3.1084 37 1 5.8703 -2.6054 -6.6843 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709974787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:17 Heat of formation + Delta-G solvation = 9.809132 kcal Electronic energy + Delta-G solvation = -16694.904124 eV Core-core repulsion = 14176.916290 eV Total energy + Delta-G solvation = -2517.987834 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.20648 -36.72283 -33.62523 -32.17565 -30.74583 -28.04677 -27.30678 -26.17800 -23.13315 -22.81063 -21.10738 -19.80585 -18.37941 -16.64471 -16.32919 -15.33342 -14.61328 -14.56315 -14.21031 -13.89948 -13.64430 -13.03614 -12.63035 -12.39826 -12.18925 -12.02413 -11.97905 -11.73116 -11.54116 -11.33016 -11.29507 -11.00197 -10.76877 -10.57143 -10.45895 -10.31403 -10.16440 -9.22854 -9.09708 -8.40554 -8.17922 -8.14458 -7.71423 -6.03240 -4.06368 1.25725 1.88895 2.32116 2.98259 3.29400 3.36193 3.40310 4.43511 4.80004 4.98229 5.06509 5.30688 5.34291 5.52033 5.59387 5.70850 5.73140 5.80634 5.94944 5.98959 6.03278 6.15178 6.26413 6.32060 6.42712 6.50763 6.52627 6.63415 6.75761 6.90889 6.98257 7.48722 7.62643 7.95178 8.03505 8.23350 8.35815 9.00114 9.58495 11.07544 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.008241 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.823373 B = 3396.657105 C = 4626.069597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.201 4.201 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.166 4.166 6 C 0.152 3.848 7 H 0.061 0.939 8 C -0.132 4.132 9 N -0.678 5.678 10 C 0.085 3.915 11 H 0.040 0.960 12 C -0.133 4.133 13 C 0.013 3.987 14 C -0.523 4.523 15 H 0.051 0.949 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.886 3.114 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 S 0.132 5.868 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.357 0.643 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.052 0.948 35 H 0.022 0.978 36 H 0.024 0.976 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 4.307 13.207 15.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.319 4.319 3 C -0.170 4.170 4 C -0.174 4.174 5 C -0.284 4.284 6 C 0.040 3.960 7 H 0.079 0.921 8 C -0.191 4.191 9 N -0.313 5.313 10 C -0.024 4.024 11 H 0.058 0.942 12 C -0.192 4.192 13 C -0.025 4.025 14 C -0.562 4.562 15 H 0.070 0.930 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.714 3.286 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.198 1.198 22 S 0.397 5.603 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.150 0.850 27 H 0.152 0.848 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.179 0.821 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.777 2.222 13.519 15.285 hybrid contribution -0.179 3.123 -1.379 3.419 sum -6.956 5.345 12.140 14.978 Atomic orbital electron populations 1.20255 0.88314 1.02589 1.02442 1.24546 0.99848 0.96748 1.10759 1.19927 0.92907 0.98933 1.05197 1.20000 0.96103 0.95877 1.05428 1.24793 0.99021 0.96455 1.08172 1.20159 0.88401 0.92288 0.95104 0.92096 1.21849 1.01773 1.00717 0.94729 1.60835 1.06796 1.38637 1.24986 1.21754 0.87947 0.96592 0.96095 0.94153 1.21834 0.98760 0.99688 0.98871 1.19443 0.97595 0.97238 0.88190 1.21173 1.38297 1.03135 0.93555 0.93036 1.24966 0.95699 0.95650 0.97630 1.69962 1.47028 1.27959 1.08018 0.86676 0.79810 0.82678 0.79425 1.20725 1.21147 1.19813 1.84308 0.95626 1.08223 1.72172 0.91653 0.91059 0.90928 0.85040 0.84849 0.92088 0.93209 0.92277 0.82144 0.93513 0.94116 0.92867 0.95971 0.95772 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.38 36.00 0.37 -0.44 16 2 C -0.20 -2.82 6.51 -36.00 -0.23 -3.05 16 3 C -0.14 -1.97 10.05 -41.21 -0.41 -2.39 16 4 C -0.14 -2.22 10.04 -41.21 -0.41 -2.63 16 5 C -0.17 -2.75 5.14 -36.00 -0.18 -2.93 16 6 C 0.15 2.58 3.06 -68.87 -0.21 2.37 16 7 H 0.06 1.09 7.16 -51.93 -0.37 0.71 16 8 C -0.13 -1.90 9.49 37.16 0.35 -1.55 16 9 N -0.68 -13.17 6.03 -100.96 -0.61 -13.78 16 10 C 0.09 1.77 2.70 -67.71 -0.18 1.59 16 11 H 0.04 0.85 7.08 -51.93 -0.37 0.49 16 12 C -0.13 -2.39 9.52 37.16 0.35 -2.04 16 13 C 0.01 0.33 4.41 -27.88 -0.12 0.20 16 14 C -0.52 -14.49 8.19 -34.44 -0.28 -14.77 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 18 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 22 S 0.13 2.05 22.69 -107.50 -2.44 -0.39 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 28 H 0.06 0.86 6.70 -51.93 -0.35 0.51 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.36 7.77 6.53 -39.29 -0.26 7.51 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.65 6.70 -51.93 -0.35 0.30 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 317.42 15.07 4.78 4.78 Total: -1.00 -29.36 317.42 -9.50 -38.85 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.88 Total: 3.56 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -1.06 Total: -23.97 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.13 Total: -39.64 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.44 Total: -0.39 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.36 -9.50 -38.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709974787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.661 kcal (2) G-P(sol) polarization free energy of solvation -29.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds