Wall clock time and date at job start Mon Mar 30 2020 07:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33387 * 125.20276 * 2 1 4 4 C 1.38433 * 114.92254 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.91611 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.20110 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.46660 * 20.00378 * 6 5 4 8 8 C 1.52994 * 109.47358 * 260.00437 * 6 5 4 9 9 N 1.46894 * 109.47341 * 139.99953 * 6 5 4 10 10 C 1.46903 * 111.00360 * 272.60205 * 9 6 5 11 11 H 1.09002 * 109.47070 * 36.90211 * 10 9 6 12 12 C 1.53008 * 109.46965 * 276.90694 * 10 9 6 13 13 C 1.53001 * 109.47597 * 156.90484 * 10 9 6 14 14 C 1.50703 * 109.46994 * 295.00374 * 13 10 9 15 15 H 1.08002 * 119.99532 * 359.97438 * 14 13 10 16 16 C 1.37872 * 119.99785 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00413 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99749 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47085 * 90.00086 * 18 16 14 20 20 H 1.48499 * 109.47276 * 209.99930 * 18 16 14 21 21 H 1.48504 * 109.47361 * 330.00032 * 18 16 14 22 22 S 1.75881 * 109.59892 * 0.24444 * 5 4 3 23 23 H 1.09004 * 109.47365 * 90.00631 * 1 2 3 24 24 H 1.08998 * 109.47204 * 210.00226 * 1 2 3 25 25 H 1.09004 * 109.47448 * 330.00137 * 1 2 3 26 26 H 1.07999 * 122.54331 * 0.05471 * 3 2 1 27 27 H 1.07998 * 122.53953 * 179.97438 * 4 3 2 28 28 H 1.09005 * 109.47179 * 175.13491 * 8 6 5 29 29 H 1.08997 * 109.47367 * 295.13547 * 8 6 5 30 30 H 1.08998 * 109.47193 * 55.13753 * 8 6 5 31 31 H 1.00902 * 111.00029 * 148.64647 * 9 6 5 32 32 H 1.08992 * 109.46800 * 175.65203 * 12 10 9 33 33 H 1.09000 * 109.46652 * 295.65113 * 12 10 9 34 34 H 1.08999 * 109.47252 * 55.64902 * 12 10 9 35 35 H 1.09001 * 109.46620 * 54.99750 * 13 10 9 36 36 H 1.08996 * 109.46955 * 174.99614 * 13 10 9 37 37 H 0.96998 * 120.00668 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9750 -0.4477 -0.0005 6 6 5.3860 -0.9770 -0.0016 7 1 6.0656 -0.2004 0.3492 8 6 5.7743 -1.3910 -1.4223 9 7 5.4726 -2.1421 0.8889 10 6 5.7534 -1.7291 2.2705 11 1 5.2255 -0.8002 2.4864 12 6 7.2582 -1.5124 2.4421 13 6 5.2819 -2.8196 3.2346 14 6 3.7825 -2.9477 3.1537 15 1 3.2220 -2.3144 2.4821 16 6 3.1265 -3.8734 3.9371 17 7 3.8092 -4.6449 4.7545 18 14 1.2680 -4.0317 3.8372 19 1 0.9113 -5.0287 2.7961 20 1 0.7378 -4.4769 5.1510 21 1 0.6772 -2.7155 3.4853 22 16 2.5209 -1.4372 -0.0067 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.8669 2.0895 0.0009 27 1 4.3720 1.6350 -0.0010 28 1 6.8217 -1.6926 -1.4394 29 1 5.1506 -2.2263 -1.7407 30 1 5.6275 -0.5493 -2.0990 31 1 6.1650 -2.7981 0.5598 32 1 7.4586 -1.1320 3.4437 33 1 7.7800 -2.4591 2.3018 34 1 7.6082 -0.7917 1.7030 35 1 5.7429 -3.7691 2.9626 36 1 5.5696 -2.5542 4.2519 37 1 3.3477 -5.2959 5.3059 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709974788.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:21 Heat of formation + Delta-G solvation = -3.203005 kcal Electronic energy + Delta-G solvation = -16941.572019 eV Core-core repulsion = 14423.019936 eV Total energy + Delta-G solvation = -2518.552082 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 6.55 seconds Orbital eigenvalues (eV) -39.41614 -38.03501 -35.27656 -33.86844 -32.01192 -29.43940 -28.74145 -27.32118 -25.02146 -23.94548 -22.43266 -21.35371 -19.63697 -18.32021 -17.61838 -16.55725 -16.28722 -16.12797 -15.63863 -14.85753 -14.69700 -14.38120 -14.03287 -13.94274 -13.75282 -13.41767 -13.20446 -13.19788 -12.93391 -12.68816 -12.66129 -12.45489 -12.29335 -12.14607 -12.03323 -11.80380 -11.32204 -11.09945 -11.01715 -10.43733 -9.19406 -9.14901 -9.02767 -8.04643 -6.05793 0.26712 0.93550 1.38858 1.39954 1.42850 1.50559 1.96727 2.49694 3.27259 3.42176 3.94908 4.11500 4.22095 4.35082 4.37878 4.48143 4.50380 4.57890 4.71307 4.74914 4.83165 4.85461 4.98024 5.03915 5.12160 5.22596 5.27569 5.33190 5.37603 5.49725 5.58987 5.73065 5.81452 5.97930 6.37641 6.53751 6.76141 7.11164 7.59236 9.08318 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.010445 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.187971 B = 2680.157153 C = 4089.483517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.217 4.217 3 C -0.146 4.146 4 C -0.159 4.159 5 C -0.159 4.159 6 C 0.150 3.850 7 H 0.067 0.933 8 C -0.141 4.141 9 N -0.676 5.676 10 C 0.104 3.896 11 H 0.050 0.950 12 C -0.169 4.169 13 C 0.037 3.963 14 C -0.489 4.489 15 H 0.076 0.924 16 C -0.005 4.005 17 N -0.944 5.944 18 Si 0.936 3.064 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.265 1.265 22 S 0.102 5.898 23 H 0.088 0.912 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.344 0.656 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.067 0.933 35 H -0.009 1.009 36 H -0.012 1.012 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 11.385 -13.179 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.335 4.335 3 C -0.177 4.177 4 C -0.189 4.189 5 C -0.278 4.278 6 C 0.039 3.961 7 H 0.085 0.915 8 C -0.199 4.199 9 N -0.308 5.308 10 C -0.006 4.006 11 H 0.068 0.932 12 C -0.228 4.228 13 C 0.000 4.000 14 C -0.527 4.527 15 H 0.094 0.906 16 C -0.200 4.200 17 N -0.587 5.587 18 Si 0.762 3.238 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 S 0.367 5.633 23 H 0.106 0.894 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.172 0.828 27 H 0.169 0.831 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.163 0.837 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.010 0.990 36 H 0.006 0.994 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.651 9.651 -12.983 16.190 hybrid contribution 0.291 1.102 0.575 1.277 sum -0.360 10.753 -12.408 16.423 Atomic orbital electron populations 1.20350 0.86883 1.03145 1.03375 1.24997 1.01193 0.96533 1.10771 1.20193 0.92771 0.99580 1.05120 1.20232 0.96809 0.95739 1.06143 1.24795 0.98543 0.96135 1.08319 1.20003 0.89205 0.92738 0.94203 0.91537 1.21930 1.01967 1.02196 0.93807 1.60349 1.54958 1.14171 1.01284 1.21416 0.93276 0.97373 0.88488 0.93159 1.22415 0.96798 1.01625 1.01985 1.19001 0.95612 0.93104 0.92324 1.21784 0.93431 1.17495 1.20032 0.90575 1.25738 1.01753 0.96481 0.96018 1.70093 1.36651 1.24361 1.27641 0.85866 0.82209 0.78688 0.76998 1.20260 1.21477 1.18924 1.84902 0.97472 1.09665 1.71220 0.89357 0.92617 0.89359 0.82785 0.83068 0.90514 0.92732 0.90651 0.83661 0.92786 0.92703 0.91407 0.99038 0.99381 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 10.38 71.23 0.74 -1.18 16 2 C -0.22 -6.65 6.51 24.58 0.16 -6.49 16 3 C -0.15 -4.07 10.05 21.22 0.21 -3.86 16 4 C -0.16 -4.54 10.04 21.22 0.21 -4.33 16 5 C -0.16 -5.14 5.23 24.59 0.13 -5.01 16 6 C 0.15 4.34 2.83 44.17 0.13 4.47 16 7 H 0.07 1.78 6.94 -2.38 -0.02 1.77 16 8 C -0.14 -3.21 9.13 71.98 0.66 -2.56 16 9 N -0.68 -24.08 5.54 -473.30 -2.62 -26.70 16 10 C 0.10 4.16 2.35 44.92 0.11 4.27 16 11 H 0.05 2.15 7.74 -2.39 -0.02 2.13 16 12 C -0.17 -5.38 9.16 71.98 0.66 -4.72 16 13 C 0.04 1.94 4.65 29.85 0.14 2.08 16 14 C -0.49 -27.90 8.84 25.60 0.23 -27.67 16 15 H 0.08 4.21 6.50 -2.91 -0.02 4.19 16 16 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 17 N -0.94 -59.26 13.29 21.45 0.28 -58.97 16 18 Si 0.94 46.66 29.54 68.60 2.03 48.68 16 19 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 20 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 21 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 22 S 0.10 3.69 21.87 -56.49 -1.24 2.46 16 23 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 27 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.08 1.44 8.14 -2.38 -0.02 1.43 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.34 11.24 8.10 -89.69 -0.73 10.52 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.75 7.27 -2.39 -0.02 1.73 16 35 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -67.13 318.59 2.59 -64.54 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.31 Total: 14.82 kcal Atomic # 6 Polarization: -48.65 SS G_CDS: 3.83 Total: -44.82 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -2.34 Total: -85.68 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.24 Total: 2.46 kcal Total: -67.13 2.59 -64.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709974788.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.339 kcal (2) G-P(sol) polarization free energy of solvation -67.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.55 seconds