Wall clock time and date at job start Mon Mar 30 2020 07:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33383 * 125.20581 * 2 1 4 4 C 1.38431 * 114.92209 * 179.74536 * 3 2 1 5 5 C 1.33387 * 114.91929 * 0.43192 * 4 3 2 6 6 C 1.50698 * 125.20064 * 179.85581 * 5 4 3 7 7 H 1.08995 * 109.47137 * 19.72353 * 6 5 4 8 8 C 1.52997 * 109.47343 * 259.71732 * 6 5 4 9 9 N 1.46911 * 109.46730 * 139.71671 * 6 5 4 10 10 C 1.46902 * 110.99614 * 205.00037 * 9 6 5 11 11 H 1.08996 * 109.47149 * 324.99463 * 10 9 6 12 12 C 1.52997 * 109.47094 * 85.00357 * 10 9 6 13 13 C 1.53006 * 109.46626 * 205.00042 * 10 9 6 14 14 C 1.50703 * 109.47148 * 65.00251 * 13 10 9 15 15 H 1.08004 * 119.99894 * 0.02562 * 14 13 10 16 16 C 1.37874 * 120.00136 * 179.97438 * 14 13 10 17 17 N 1.31512 * 119.99679 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00188 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47086 * 89.99749 * 18 16 14 20 20 H 1.48500 * 109.47223 * 209.99861 * 18 16 14 21 21 H 1.48499 * 109.46912 * 330.00223 * 18 16 14 22 22 S 1.75883 * 109.59192 * 359.59112 * 5 4 3 23 23 H 1.08998 * 109.47453 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47465 * 300.00490 * 1 2 3 25 25 H 1.09005 * 109.47036 * 59.99975 * 1 2 3 26 26 H 1.08000 * 122.54358 * 359.97307 * 3 2 1 27 27 H 1.08000 * 122.53762 * 180.26528 * 4 3 2 28 28 H 1.08995 * 109.47175 * 60.00142 * 8 6 5 29 29 H 1.09002 * 109.47293 * 180.02562 * 8 6 5 30 30 H 1.09005 * 109.46824 * 300.00191 * 8 6 5 31 31 H 1.00897 * 110.99488 * 81.04654 * 9 6 5 32 32 H 1.09002 * 109.47153 * 299.99508 * 12 10 9 33 33 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 34 34 H 1.09004 * 109.47261 * 59.99681 * 12 10 9 35 35 H 1.08996 * 109.46945 * 184.99785 * 13 10 9 36 36 H 1.09000 * 109.47314 * 304.99907 * 13 10 9 37 37 H 0.97002 * 119.99753 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8427 0.0056 5 6 3.9750 -0.4478 0.0010 6 6 5.3860 -0.9772 0.0023 7 1 6.0651 -0.2006 0.3542 8 6 5.7767 -1.3914 -1.4177 9 7 5.4710 -2.1422 0.8932 10 6 6.8409 -2.3253 1.3911 11 1 7.5508 -2.0405 0.6146 12 6 7.0562 -1.4479 2.6259 13 6 7.0556 -3.7934 1.7649 14 6 6.9647 -4.6458 0.5254 15 1 6.7733 -4.1863 -0.4331 16 6 7.1269 -6.0120 0.6149 17 7 7.3614 -6.5713 1.7819 18 14 7.0135 -7.0687 -0.9213 19 1 8.3603 -7.1986 -1.5333 20 1 6.5022 -8.4151 -0.5594 21 1 6.0878 -6.4322 -1.8926 22 16 2.5208 -1.4372 0.0008 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8670 2.0894 -0.0004 27 1 4.3721 1.6349 0.0104 28 1 5.7136 -0.5270 -2.0787 29 1 6.7971 -1.7747 -1.4166 30 1 5.0975 -2.1681 -1.7694 31 1 5.1398 -2.9757 0.4310 32 1 6.9032 -0.4021 2.3597 33 1 8.0725 -1.5841 2.9956 34 1 6.3462 -1.7328 3.4024 35 1 8.0404 -3.9130 2.2166 36 1 6.2897 -4.1031 2.4759 37 1 7.4759 -7.5325 1.8448 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709974791.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:44 Heat of formation + Delta-G solvation = 8.441920 kcal Electronic energy + Delta-G solvation = -16507.517139 eV Core-core repulsion = 13989.470018 eV Total energy + Delta-G solvation = -2518.047121 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.22571 -36.84340 -33.64567 -32.18862 -30.85799 -27.63941 -27.41012 -26.31103 -23.29574 -22.82813 -21.26937 -19.65537 -18.44510 -16.56124 -16.33937 -15.38226 -14.84488 -14.56528 -14.17442 -13.78084 -13.50649 -13.07040 -12.85056 -12.73156 -12.25757 -12.10289 -11.78861 -11.66874 -11.56747 -11.38091 -11.26098 -10.99171 -10.81124 -10.66564 -10.47042 -10.32887 -10.21143 -9.28033 -9.07452 -8.40823 -8.21033 -8.17027 -7.68772 -6.03329 -4.06532 1.25311 1.89072 2.33664 2.94421 3.28903 3.36071 3.38057 4.42424 4.75010 4.96509 5.16058 5.27410 5.35122 5.46696 5.47831 5.53710 5.64185 5.75927 5.88826 5.95641 5.98982 6.09824 6.21345 6.28034 6.35276 6.42353 6.54682 6.58476 6.73880 6.92541 6.93890 7.49930 7.62704 7.95717 8.02065 8.21526 8.35905 8.99530 9.57785 11.07563 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.024081 B = 0.005701 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.440284 B = 4910.040072 C = 5420.679396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.206 4.206 3 C -0.138 4.138 4 C -0.156 4.156 5 C -0.138 4.138 6 C 0.148 3.852 7 H 0.088 0.912 8 C -0.176 4.176 9 N -0.676 5.676 10 C 0.089 3.911 11 H 0.032 0.968 12 C -0.136 4.136 13 C 0.020 3.980 14 C -0.524 4.524 15 H 0.052 0.948 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 S 0.132 5.868 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.356 0.644 32 H 0.036 0.964 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.026 0.974 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.299 13.671 -4.158 17.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.324 4.324 3 C -0.169 4.169 4 C -0.186 4.186 5 C -0.256 4.256 6 C 0.035 3.965 7 H 0.106 0.894 8 C -0.235 4.235 9 N -0.310 5.310 10 C -0.021 4.021 11 H 0.050 0.950 12 C -0.194 4.194 13 C -0.017 4.017 14 C -0.562 4.562 15 H 0.071 0.929 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.199 1.199 22 S 0.396 5.604 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.148 0.852 27 H 0.150 0.850 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.178 0.822 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.044 0.956 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.757 12.257 -3.500 16.053 hybrid contribution 0.764 0.547 -1.589 1.846 sum -8.993 12.804 -5.090 16.454 Atomic orbital electron populations 1.20243 0.88435 1.02558 1.02323 1.24521 0.99778 0.96802 1.11299 1.19891 0.92911 0.98773 1.05356 1.19922 0.95980 0.95720 1.06995 1.24650 0.98605 0.96115 1.06257 1.20018 0.89309 0.95197 0.91968 0.89448 1.22506 1.02585 1.01448 0.96982 1.60700 1.24332 1.06517 1.39436 1.21625 0.87090 0.98715 0.94625 0.94981 1.21810 1.00507 0.98144 0.98895 1.19280 0.97563 0.87762 0.97080 1.21171 1.49356 0.91905 0.93801 0.92946 1.24975 0.95181 0.98126 0.95730 1.69960 1.48674 1.10913 1.23351 0.86665 0.78241 0.80017 0.83515 1.20751 1.21177 1.19886 1.84459 0.95877 1.08241 1.71785 0.91693 0.91062 0.91141 0.85206 0.85034 0.92653 0.91446 0.92272 0.82232 0.94514 0.93268 0.92610 0.95991 0.95568 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.38 36.00 0.37 -0.37 16 2 C -0.21 -2.66 6.51 -36.01 -0.23 -2.89 16 3 C -0.14 -1.75 10.05 -41.21 -0.41 -2.17 16 4 C -0.16 -2.14 10.04 -41.21 -0.41 -2.55 16 5 C -0.14 -2.11 5.46 -36.00 -0.20 -2.31 16 6 C 0.15 2.38 2.83 -68.86 -0.19 2.19 16 7 H 0.09 1.36 7.09 -51.93 -0.37 0.99 16 8 C -0.18 -2.72 9.13 37.16 0.34 -2.38 16 9 N -0.68 -12.96 5.82 -100.95 -0.59 -13.55 16 10 C 0.09 1.81 2.40 -67.71 -0.16 1.65 16 11 H 0.03 0.66 7.11 -51.93 -0.37 0.29 16 12 C -0.14 -2.44 9.40 37.16 0.35 -2.10 16 13 C 0.02 0.52 4.57 -27.88 -0.13 0.39 16 14 C -0.52 -14.17 8.12 -34.44 -0.28 -14.45 16 15 H 0.05 1.37 7.49 -52.48 -0.39 0.98 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 18 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 S 0.13 1.97 23.06 -107.50 -2.48 -0.50 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 27 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.10 7.43 -51.93 -0.39 0.72 16 30 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 31 H 0.36 7.48 6.95 -39.29 -0.27 7.21 16 32 H 0.04 0.59 7.43 -51.93 -0.39 0.20 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -28.81 318.54 -9.57 -38.38 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.96 Total: 3.52 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -1.06 Total: -23.35 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.15 Total: -39.12 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.48 Total: -0.50 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.81 -9.57 -38.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709974791.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.823 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds