Wall clock time and date at job start Mon Mar 30 2020 07:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33414 * 125.16063 * 2 1 4 4 C 1.38768 * 114.88102 * 180.02562 * 3 2 1 5 5 N 1.40780 * 122.61105 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00388 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47473 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.47127 * 59.99627 * 7 6 5 9 9 C 1.52999 * 109.46991 * 300.00312 * 7 6 5 10 10 C 1.52997 * 109.47232 * 179.97438 * 7 6 5 11 11 C 1.50703 * 109.47084 * 179.97438 * 10 7 6 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 7 13 13 C 1.37880 * 119.99788 * 180.02562 * 11 10 7 14 14 N 1.31510 * 119.99893 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99600 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47313 * 90.00058 * 15 13 11 17 17 H 1.48500 * 109.46706 * 210.00040 * 15 13 11 18 18 H 1.48500 * 109.46954 * 329.99547 * 15 13 11 19 19 C 1.33749 * 114.77923 * 0.26877 * 4 3 2 20 20 S 1.75866 * 109.60826 * 359.60153 * 19 4 3 21 21 H 1.08999 * 109.47069 * 89.99586 * 1 2 3 22 22 H 1.08992 * 109.47590 * 210.00542 * 1 2 3 23 23 H 1.09010 * 109.46591 * 330.00060 * 1 2 3 24 24 H 1.08002 * 122.55507 * 359.97438 * 3 2 1 25 25 H 0.97003 * 119.99629 * 0.02562 * 5 4 3 26 26 H 1.09002 * 109.47129 * 59.99904 * 6 5 4 27 27 H 1.09001 * 109.46596 * 300.00259 * 6 5 4 28 28 H 1.09001 * 109.46801 * 300.00272 * 8 7 6 29 29 H 1.09001 * 109.46998 * 59.99868 * 8 7 6 30 30 H 1.09000 * 109.47050 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.47160 * 179.97438 * 9 7 6 32 32 H 1.09002 * 109.46719 * 299.99711 * 9 7 6 33 33 H 1.08993 * 109.47839 * 59.99553 * 9 7 6 34 34 H 1.09001 * 109.47375 * 299.99867 * 10 7 6 35 35 H 1.09002 * 109.46777 * 60.00422 * 10 7 6 36 36 H 0.97005 * 119.99227 * 180.02562 * 14 13 11 37 37 H 1.08002 * 125.19327 * 179.72752 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2753 1.0907 0.0000 4 6 3.6407 0.8431 -0.0006 5 7 4.5989 1.8745 -0.0012 6 6 6.0270 1.5478 -0.0023 7 6 6.8459 2.8401 -0.0022 8 6 6.5104 3.6564 1.2478 9 6 6.5087 3.6577 -1.2507 10 6 8.3373 2.4988 -0.0027 11 6 9.1439 3.7718 -0.0032 12 1 8.6429 4.7285 -0.0027 13 6 10.5216 3.7150 -0.0042 14 7 11.1316 2.5500 -0.0054 15 14 11.5214 5.2930 -0.0041 16 1 11.7874 5.7103 1.3959 17 1 12.8099 5.0625 -0.7053 18 1 10.7616 6.3604 -0.7031 19 6 3.9756 -0.4518 -0.0067 20 16 2.5195 -1.4380 -0.0007 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3634 -0.8898 0.5139 23 1 -0.3633 0.8901 0.5139 24 1 1.8658 2.0901 -0.0004 25 1 4.3134 2.8016 -0.0008 26 1 6.2659 0.9659 -0.8926 27 1 6.2671 0.9657 0.8874 28 1 5.4478 3.8995 1.2485 29 1 6.7505 3.0739 2.1373 30 1 7.0935 4.5773 1.2477 31 1 7.0918 4.5786 -1.2503 32 1 6.7477 3.0762 -2.1411 33 1 5.4463 3.9008 -1.2499 34 1 8.5772 1.9166 0.8870 35 1 8.5766 1.9173 -0.8930 36 1 12.1008 2.5101 -0.0057 37 1 4.9859 -0.8334 -0.0123 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710699007.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:55 Heat of formation + Delta-G solvation = -4.321247 kcal Electronic energy + Delta-G solvation = -16334.057341 eV Core-core repulsion = 13815.456768 eV Total energy + Delta-G solvation = -2518.600573 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.03748 -38.41461 -35.19527 -34.02896 -31.47804 -28.96551 -27.97909 -27.86493 -27.00581 -24.87136 -22.48043 -20.12102 -19.89251 -18.39360 -18.16780 -16.87632 -16.39381 -15.83302 -15.81313 -14.92474 -14.85034 -14.60601 -14.20474 -14.11654 -13.97191 -13.78228 -13.18975 -13.02771 -12.83101 -12.75892 -12.60624 -12.55020 -12.35112 -12.21428 -11.96506 -11.61075 -11.54703 -10.99096 -10.85351 -10.52637 -10.48419 -9.43949 -8.15521 -8.15211 -6.23036 0.23222 0.86517 1.21939 1.41291 1.41571 1.52050 2.03865 2.42260 2.72760 3.18892 3.97902 4.04285 4.10172 4.23280 4.38886 4.55351 4.67201 4.72338 4.74469 4.75091 4.81404 4.96614 5.08434 5.10197 5.11857 5.18950 5.29073 5.39129 5.46301 5.47271 5.50527 5.55033 5.79512 5.88520 6.26516 6.39545 6.91311 6.97594 7.44622 8.96961 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.052636 B = 0.003943 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.830155 B = 7100.285694 C = 7430.457772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.146 4.146 3 C -0.184 4.184 4 C 0.189 3.811 5 N -0.731 5.731 6 C 0.156 3.844 7 C -0.064 4.064 8 C -0.118 4.118 9 C -0.118 4.118 10 C 0.042 3.958 11 C -0.516 4.516 12 H 0.069 0.931 13 C -0.004 4.004 14 N -0.937 5.937 15 Si 0.957 3.043 16 H -0.275 1.275 17 H -0.288 1.288 18 H -0.261 1.261 19 C -0.353 4.353 20 S 0.091 5.909 21 H 0.088 0.912 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.157 0.843 25 H 0.404 0.596 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.064 0.936 34 H -0.013 1.013 35 H -0.013 1.013 36 H 0.260 0.740 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.249 -2.573 -0.008 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.264 4.264 3 C -0.218 4.218 4 C 0.078 3.922 5 N -0.365 5.365 6 C 0.031 3.969 7 C -0.065 4.065 8 C -0.176 4.176 9 C -0.175 4.175 10 C 0.004 3.996 11 C -0.554 4.554 12 H 0.087 0.913 13 C -0.201 4.201 14 N -0.579 5.579 15 Si 0.783 3.217 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.185 1.185 19 C -0.495 4.495 20 S 0.350 5.650 21 H 0.106 0.894 22 H 0.098 0.902 23 H 0.109 0.891 24 H 0.174 0.826 25 H 0.241 0.759 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.005 0.995 35 H 0.005 0.995 36 H 0.069 0.931 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.168 -4.245 -0.010 21.590 hybrid contribution 1.800 2.075 0.005 2.747 sum -19.369 -2.170 -0.005 19.490 Atomic orbital electron populations 1.20493 0.85276 1.04367 1.03943 1.24743 1.01252 0.95009 1.05396 1.19854 0.90648 1.00964 1.10297 1.17058 0.89670 0.88391 0.97086 1.44569 1.02730 1.06109 1.83110 1.21076 0.80119 0.96681 0.99064 1.20671 0.95148 0.94059 0.96592 1.21652 1.00268 0.99727 0.95923 1.21646 1.00252 0.99706 0.95944 1.18956 0.90631 0.95670 0.94324 1.21594 0.91274 0.93661 1.48831 0.91266 1.25929 0.99612 0.99118 0.95426 1.70113 1.09147 1.26057 1.52550 0.85556 0.77953 0.79953 0.78263 1.20112 1.21387 1.18521 1.24543 1.02016 0.95765 1.27192 1.83788 0.95602 1.09296 1.76328 0.89355 0.90237 0.89062 0.82551 0.75908 0.94253 0.94261 0.91744 0.94488 0.92904 0.92946 0.94488 0.91744 0.99506 0.99499 0.93128 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.37 71.24 0.74 -0.27 16 2 C -0.15 -2.96 6.51 24.59 0.16 -2.80 16 3 C -0.18 -4.20 10.01 21.30 0.21 -3.99 16 4 C 0.19 5.37 6.62 36.81 0.24 5.62 16 5 N -0.73 -21.33 5.20 -342.75 -1.78 -23.11 16 6 C 0.16 5.51 4.04 86.38 0.35 5.85 16 7 C -0.06 -2.49 0.54 -52.18 -0.03 -2.52 16 8 C -0.12 -4.20 8.05 71.98 0.58 -3.62 16 9 C -0.12 -4.20 8.05 71.98 0.58 -3.62 16 10 C 0.04 2.14 4.04 29.85 0.12 2.26 16 11 C -0.52 -28.02 7.65 25.60 0.20 -27.83 16 12 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 13 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 14 N -0.94 -57.10 13.29 21.45 0.28 -56.82 16 15 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 19 C -0.35 -10.47 10.41 66.80 0.70 -9.78 16 20 S 0.09 2.13 23.32 -56.49 -1.32 0.81 16 21 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 24 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 25 H 0.40 10.36 6.25 -92.71 -0.58 9.78 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.83 6.86 -2.39 -0.02 1.82 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 2.00 6.62 -2.39 -0.02 1.98 16 31 H 0.05 1.99 6.62 -2.39 -0.02 1.97 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.84 6.86 -2.39 -0.02 1.82 16 34 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 36 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 37 H 0.14 4.52 7.48 -2.91 -0.02 4.50 16 Total: -1.00 -63.24 310.41 3.99 -59.25 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.47 Total: 14.35 kcal Atomic # 6 Polarization: -44.75 SS G_CDS: 4.31 Total: -40.44 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.50 Total: -79.93 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.32 Total: 0.81 kcal Total: -63.24 3.99 -59.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710699007.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.929 kcal (2) G-P(sol) polarization free energy of solvation -63.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds