Wall clock time and date at job start Mon Mar 30 2020 06:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.47092 * 2 1 4 4 N 1.30002 * 127.34286 * 269.97421 * 3 2 1 5 5 O 1.20651 * 112.32201 * 180.02562 * 4 3 2 6 6 C 1.33464 * 113.17843 * 359.73907 * 5 4 3 7 7 C 1.50705 * 126.84048 * 180.30562 * 6 5 4 8 8 C 1.37436 * 106.32713 * 0.41619 * 6 5 4 9 9 C 1.47260 * 128.57552 * 179.88714 * 8 6 5 10 10 O 1.21524 * 120.00043 * 269.67724 * 9 8 6 11 11 O 1.34754 * 119.99782 * 89.67526 * 9 8 6 12 12 C 1.45206 * 117.00283 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46590 * 30.00186 * 12 11 9 14 14 C 1.52997 * 109.47226 * 270.00410 * 12 11 9 15 15 C 1.50697 * 109.47178 * 149.99891 * 12 11 9 16 16 H 1.07999 * 120.00055 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99687 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00458 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99926 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.46872 * 59.99743 * 19 17 15 21 21 H 1.48503 * 109.47008 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46914 * 299.99916 * 19 17 15 23 23 H 1.08993 * 109.46808 * 299.99717 * 1 2 3 24 24 H 1.08998 * 109.47248 * 59.99658 * 1 2 3 25 25 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46855 * 240.00269 * 2 1 3 27 27 H 1.08998 * 109.47248 * 120.00342 * 2 1 3 28 28 H 1.08995 * 109.47247 * 270.13560 * 7 6 5 29 29 H 1.09000 * 109.46606 * 30.13270 * 7 6 5 30 30 H 1.08997 * 109.47123 * 150.13209 * 7 6 5 31 31 H 1.09002 * 109.47153 * 299.99431 * 14 12 11 32 32 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 33 33 H 1.09004 * 109.47261 * 59.99603 * 14 12 11 34 34 H 0.96999 * 120.00480 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2957 2.1641 -1.0335 5 8 2.6844 3.2626 -0.7209 6 6 2.7421 3.4431 0.6003 7 6 3.1755 4.6921 1.3236 8 6 2.3300 2.2622 1.1699 9 6 2.2098 1.9244 2.5982 10 8 3.1522 1.4337 3.1879 11 8 1.0547 2.1597 3.2512 12 6 1.0077 1.8012 4.6576 13 1 2.0039 1.8950 5.0898 14 6 0.5239 0.3567 4.7998 15 6 0.0582 2.7224 5.3792 16 1 -0.4586 3.4993 4.8353 17 6 -0.1508 2.5734 6.7339 18 7 0.4781 1.6271 7.3962 19 14 -1.3283 3.7149 7.6285 20 1 -2.6855 3.5862 7.0397 21 1 -1.3762 3.3483 9.0667 22 1 -0.8595 5.1171 7.4898 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 4.2505 4.6555 1.4997 29 1 2.9365 5.5651 0.7162 30 1 2.6530 4.7593 2.2778 31 1 -0.4724 0.2630 4.3675 32 1 0.4890 0.0876 5.8555 33 1 1.2107 -0.3096 4.2778 34 1 0.3314 1.5225 8.3493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733710701.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:05 Heat of formation + Delta-G solvation = -43.335065 kcal Electronic energy + Delta-G solvation = -18908.109326 eV Core-core repulsion = 15809.231022 eV Total energy + Delta-G solvation = -3098.878305 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -44.79643 -39.44542 -35.86518 -35.21913 -33.61846 -33.24767 -31.30012 -29.69278 -28.00575 -25.43538 -25.15813 -23.93685 -21.63220 -20.11873 -19.58914 -17.77389 -17.62003 -16.62806 -16.44165 -15.51001 -15.06278 -14.64599 -14.28623 -14.16785 -13.37401 -13.26954 -13.10068 -12.75023 -12.51732 -12.28454 -12.00284 -11.57572 -11.47227 -11.28882 -11.11528 -10.92196 -10.81473 -10.46415 -10.36093 -10.03471 -9.85608 -9.64944 -9.29763 -8.98767 -8.55328 -6.24308 -4.31970 1.37659 1.97437 2.58122 2.88493 3.22596 3.26603 3.28882 3.61558 4.14725 4.28763 4.33055 4.96972 5.08798 5.12916 5.22783 5.28110 5.32559 5.37498 5.57827 5.68055 5.83325 5.87739 5.96092 6.07570 6.26557 6.54760 6.81344 6.82128 7.02301 7.50202 7.63584 7.82496 8.05177 8.26477 8.49148 8.78549 9.33716 10.83071 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.006043 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.501039 B = 4632.274323 C = 5075.775514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C 0.064 3.936 4 N -0.358 5.358 5 O 0.094 5.906 6 C 0.021 3.979 7 C -0.080 4.080 8 C -0.221 4.221 9 C 0.538 3.462 10 O -0.502 6.502 11 O -0.343 6.343 12 C 0.215 3.785 13 H 0.048 0.952 14 C -0.156 4.156 15 C -0.524 4.524 16 H 0.069 0.931 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.912 3.088 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.274 1.274 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.101 0.899 33 H 0.016 0.984 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 1.650 -11.916 12.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 C -0.098 4.098 4 N -0.065 5.065 5 O 0.033 5.967 6 C -0.042 4.042 7 C -0.137 4.137 8 C -0.226 4.226 9 C 0.379 3.621 10 O -0.391 6.391 11 O -0.259 6.259 12 C 0.163 3.837 13 H 0.066 0.934 14 C -0.213 4.213 15 C -0.562 4.562 16 H 0.087 0.913 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.739 3.261 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.057 0.943 32 H 0.119 0.881 33 H 0.035 0.965 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.396 1.260 -12.802 13.085 hybrid contribution -0.521 0.321 1.412 1.539 sum 1.875 1.581 -11.390 11.651 Atomic orbital electron populations 1.21749 0.93212 1.02640 1.03043 1.20026 0.97071 0.87369 1.04134 1.24704 0.99993 0.98814 0.86270 1.73546 1.17132 0.92593 1.23245 1.84485 1.63070 1.26668 1.22489 1.24587 0.98906 0.97175 0.83539 1.20517 1.03137 0.90325 0.99758 1.21254 1.12377 0.95475 0.93524 1.19518 0.82230 0.75316 0.84991 1.90827 1.39878 1.40422 1.67997 1.86656 1.34070 1.75029 1.30159 1.20742 0.98879 0.93587 0.70521 0.93400 1.22177 0.98437 0.96247 1.04473 1.20968 1.26164 1.16116 0.92924 0.91268 1.24877 0.96224 0.95854 0.96864 1.69879 1.41878 1.31635 1.09203 0.86322 0.80891 0.80615 0.78257 1.19895 1.20963 1.19920 0.91305 0.92427 0.91388 0.89603 0.89258 0.88695 0.89040 0.88165 0.94271 0.88070 0.96451 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.90 37.16 0.37 -1.51 16 2 C -0.05 -0.65 6.55 -27.88 -0.18 -0.83 16 3 C 0.06 1.04 6.84 -79.76 -0.55 0.50 16 4 N -0.36 -5.67 12.01 34.79 0.42 -5.26 16 5 O 0.09 1.38 11.06 18.73 0.21 1.59 16 6 C 0.02 0.31 7.55 -34.60 -0.26 0.05 16 7 C -0.08 -0.89 10.33 36.01 0.37 -0.52 16 8 C -0.22 -3.96 6.37 -102.91 -0.66 -4.61 16 9 C 0.54 11.58 7.72 34.40 0.27 11.84 16 10 O -0.50 -12.00 16.37 -19.28 -0.32 -12.31 16 11 O -0.34 -8.14 9.87 -40.64 -0.40 -8.54 16 12 C 0.21 5.64 2.56 -27.89 -0.07 5.57 16 13 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 14 C -0.16 -3.86 9.33 37.16 0.35 -3.51 16 15 C -0.52 -14.35 8.90 -34.44 -0.31 -14.66 16 16 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -24.68 11.32 55.43 0.63 -24.05 16 19 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 1.24 8.11 -51.93 -0.42 0.82 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.10 2.67 6.07 -51.93 -0.32 2.36 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 303.57 15.07 4.57 4.57 Total: -1.00 -30.49 303.57 -5.13 -35.62 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.46 Total: -1.15 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -0.77 Total: -6.05 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: 1.05 Total: -29.31 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.51 Total: -19.26 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.49 -5.13 -35.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710701.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.712 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds