Wall clock time and date at job start Mon Mar 30 2020 06:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.47092 * 2 1 4 4 N 1.30002 * 127.34286 * 269.97421 * 3 2 1 5 5 O 1.20651 * 112.32201 * 180.02562 * 4 3 2 6 6 C 1.33464 * 113.17843 * 359.73907 * 5 4 3 7 7 C 1.50705 * 126.84048 * 180.30562 * 6 5 4 8 8 C 1.37436 * 106.32713 * 0.41619 * 6 5 4 9 9 C 1.47260 * 128.57552 * 179.88714 * 8 6 5 10 10 O 1.21524 * 120.00043 * 269.67724 * 9 8 6 11 11 O 1.34754 * 119.99782 * 89.67526 * 9 8 6 12 12 C 1.45206 * 117.00283 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46590 * 30.00186 * 12 11 9 14 14 C 1.52997 * 109.47226 * 270.00410 * 12 11 9 15 15 C 1.50697 * 109.47178 * 149.99891 * 12 11 9 16 16 H 1.07999 * 120.00055 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99687 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00458 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99926 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.46872 * 59.99743 * 19 17 15 21 21 H 1.48503 * 109.47008 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46914 * 299.99916 * 19 17 15 23 23 H 1.08993 * 109.46808 * 299.99717 * 1 2 3 24 24 H 1.08998 * 109.47248 * 59.99658 * 1 2 3 25 25 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46855 * 240.00269 * 2 1 3 27 27 H 1.08998 * 109.47248 * 120.00342 * 2 1 3 28 28 H 1.08995 * 109.47247 * 270.13560 * 7 6 5 29 29 H 1.09000 * 109.46606 * 30.13270 * 7 6 5 30 30 H 1.08997 * 109.47123 * 150.13209 * 7 6 5 31 31 H 1.09002 * 109.47153 * 299.99431 * 14 12 11 32 32 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 33 33 H 1.09004 * 109.47261 * 59.99603 * 14 12 11 34 34 H 0.96999 * 120.00480 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2957 2.1641 -1.0335 5 8 2.6844 3.2626 -0.7209 6 6 2.7421 3.4431 0.6003 7 6 3.1755 4.6921 1.3236 8 6 2.3300 2.2622 1.1699 9 6 2.2098 1.9244 2.5982 10 8 3.1522 1.4337 3.1879 11 8 1.0547 2.1597 3.2512 12 6 1.0077 1.8012 4.6576 13 1 2.0039 1.8950 5.0898 14 6 0.5239 0.3567 4.7998 15 6 0.0582 2.7224 5.3792 16 1 -0.4586 3.4993 4.8353 17 6 -0.1508 2.5734 6.7339 18 7 0.4781 1.6271 7.3962 19 14 -1.3283 3.7149 7.6285 20 1 -2.6855 3.5862 7.0397 21 1 -1.3762 3.3483 9.0667 22 1 -0.8595 5.1171 7.4898 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 4.2505 4.6555 1.4997 29 1 2.9365 5.5651 0.7162 30 1 2.6530 4.7593 2.2778 31 1 -0.4724 0.2630 4.3675 32 1 0.4890 0.0876 5.8555 33 1 1.2107 -0.3096 4.2778 34 1 0.3314 1.5225 8.3493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710701.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:04 Heat of formation + Delta-G solvation = -60.405920 kcal Electronic energy + Delta-G solvation = -18908.849574 eV Core-core repulsion = 15809.231022 eV Total energy + Delta-G solvation = -3099.618552 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.04502 -41.26631 -37.71759 -36.44806 -35.37336 -34.73099 -32.46450 -31.69754 -29.14269 -27.48304 -26.59110 -25.15120 -23.38488 -21.74260 -20.92472 -19.35427 -18.98045 -18.52314 -18.04058 -17.19786 -16.74507 -16.43235 -15.57754 -15.34994 -14.88680 -14.54298 -14.25442 -14.16662 -13.97805 -13.73810 -13.58579 -13.23845 -13.04652 -12.82894 -12.65462 -12.54991 -12.41320 -12.20058 -11.99146 -11.77295 -11.66338 -11.13469 -11.03591 -10.61749 -10.53349 -8.29773 -6.47168 0.13285 0.68556 0.89295 1.42293 1.46450 1.52218 1.58602 2.10434 2.40712 2.94333 3.01355 3.10766 3.74632 3.82039 4.02937 4.20455 4.25775 4.26489 4.48963 4.53802 4.63955 4.75289 4.76401 4.79135 4.88520 4.98457 5.02268 5.07714 5.22848 5.44360 5.57232 5.81728 5.99118 6.53903 6.78583 7.03580 7.24037 8.77809 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.006043 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.501039 B = 4632.274323 C = 5075.775514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.051 4.051 3 C 0.065 3.935 4 N -0.363 5.363 5 O 0.103 5.897 6 C 0.049 3.951 7 C -0.083 4.083 8 C -0.268 4.268 9 C 0.547 3.453 10 O -0.532 6.532 11 O -0.349 6.349 12 C 0.218 3.782 13 H 0.013 0.987 14 C -0.144 4.144 15 C -0.551 4.551 16 H 0.069 0.931 17 C 0.020 3.980 18 N -0.916 5.916 19 Si 0.981 3.019 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.266 1.266 23 H 0.041 0.959 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.025 0.975 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.592 2.709 -12.911 13.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C -0.098 4.098 4 N -0.071 5.071 5 O 0.044 5.956 6 C -0.014 4.014 7 C -0.140 4.140 8 C -0.274 4.274 9 C 0.390 3.610 10 O -0.423 6.423 11 O -0.265 6.265 12 C 0.165 3.835 13 H 0.031 0.969 14 C -0.202 4.202 15 C -0.588 4.588 16 H 0.087 0.913 17 C -0.180 4.180 18 N -0.553 5.553 19 Si 0.804 3.196 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.191 1.191 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.109 0.891 26 H 0.130 0.870 27 H 0.098 0.902 28 H 0.134 0.866 29 H 0.147 0.853 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.044 0.956 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.808 2.322 -13.826 14.136 hybrid contribution -0.265 0.009 1.665 1.686 sum 1.544 2.332 -12.161 12.478 Atomic orbital electron populations 1.21718 0.92456 1.03900 1.02033 1.20179 0.97665 0.86197 1.04884 1.25047 0.99502 0.99701 0.85512 1.73531 1.17659 0.92865 1.22998 1.84491 1.62630 1.26329 1.22166 1.25169 0.95799 0.97111 0.83358 1.20779 1.04085 0.89949 0.99189 1.21099 1.16556 0.97925 0.91802 1.19933 0.80936 0.74005 0.86100 1.90798 1.40542 1.41777 1.69142 1.86645 1.35468 1.75401 1.28977 1.20487 0.96890 0.94359 0.71752 0.96904 1.22010 0.99017 0.95669 1.03461 1.21236 1.26931 1.16802 0.93830 0.91326 1.25791 0.97612 0.97240 0.97340 1.69995 1.42807 1.32849 1.09656 0.85255 0.78686 0.78600 0.77033 1.19006 1.20208 1.19075 0.93956 0.91658 0.89054 0.87046 0.90248 0.86593 0.85261 0.89681 0.93434 0.89758 0.95626 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.90 71.98 0.71 -2.76 16 2 C -0.05 -1.35 6.55 29.85 0.20 -1.15 16 3 C 0.06 2.04 6.84 45.17 0.31 2.35 16 4 N -0.36 -10.91 12.01 -44.74 -0.54 -11.44 16 5 O 0.10 2.84 11.06 77.25 0.85 3.69 16 6 C 0.05 1.39 7.55 25.50 0.19 1.58 16 7 C -0.08 -1.66 10.33 71.24 0.74 -0.93 16 8 C -0.27 -9.56 6.37 -18.75 -0.12 -9.68 16 9 C 0.55 24.10 7.72 70.19 0.54 24.64 16 10 O -0.53 -26.28 16.37 19.76 0.32 -25.96 16 11 O -0.35 -16.99 9.87 -56.65 -0.56 -17.55 16 12 C 0.22 11.80 2.56 29.85 0.08 11.88 16 13 H 0.01 0.79 7.16 -2.39 -0.02 0.77 16 14 C -0.14 -7.29 9.33 71.98 0.67 -6.62 16 15 C -0.55 -30.59 8.90 25.60 0.23 -30.36 16 16 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 17 C 0.02 1.09 5.30 84.66 0.45 1.54 16 18 N -0.92 -51.40 11.32 21.45 0.24 -51.16 16 19 Si 0.98 41.70 29.54 68.60 2.03 43.72 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 27 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 2.03 8.11 -2.39 -0.02 2.01 16 31 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.08 4.57 6.07 -2.39 -0.01 4.55 16 33 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -66.26 303.57 7.44 -58.82 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.10 Total: 9.39 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 3.99 Total: -9.51 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.29 Total: -62.60 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: 0.62 Total: -39.82 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -66.26 7.44 -58.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710701.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.590 kcal (2) G-P(sol) polarization free energy of solvation -66.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds