Wall clock time and date at job start Mon Mar 30 2020 06:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47083 * 2 1 4 4 C 1.50700 * 109.47328 * 120.00202 * 2 1 3 5 5 O 1.34230 * 126.53139 * 299.97098 * 4 2 1 6 6 C 1.34056 * 108.24108 * 180.02562 * 5 4 2 7 7 N 1.29912 * 109.26568 * 0.02562 * 6 5 4 8 8 C 1.36105 * 108.47392 * 359.97438 * 7 6 5 9 9 C 1.47271 * 126.46232 * 179.73859 * 8 7 6 10 10 O 1.21538 * 120.00279 * 180.02562 * 9 8 7 11 11 O 1.34778 * 120.00059 * 0.02646 * 9 8 7 12 12 C 1.45200 * 117.00478 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46551 * 29.99479 * 12 11 9 14 14 C 1.53002 * 109.46717 * 270.00197 * 12 11 9 15 15 C 1.50695 * 109.47253 * 149.99873 * 12 11 9 16 16 H 1.08001 * 120.00112 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99643 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00290 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99792 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46796 * 60.00390 * 19 17 15 21 21 H 1.48494 * 109.47214 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47385 * 300.00791 * 19 17 15 23 23 H 1.08995 * 109.47413 * 59.99859 * 1 2 3 24 24 H 1.09009 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47136 * 299.99226 * 1 2 3 26 26 H 1.09009 * 109.46848 * 240.00199 * 2 1 3 27 27 H 1.08998 * 109.46961 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47029 * 300.00170 * 3 2 1 29 29 H 1.08995 * 109.47167 * 60.00286 * 3 2 1 30 30 H 1.08002 * 125.36393 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.47498 * 59.99943 * 14 12 11 32 32 H 1.09001 * 109.46810 * 179.97438 * 14 12 11 33 33 H 1.08999 * 109.47367 * 299.99681 * 14 12 11 34 34 H 0.97008 * 120.00027 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7907 -0.3678 2.5056 6 6 2.4137 -1.2481 3.3019 7 7 3.0335 -2.1243 2.5699 8 6 2.8187 -1.8218 1.2604 9 6 3.3433 -2.5544 0.0955 10 8 3.0765 -2.1787 -1.0292 11 8 4.1192 -3.6414 0.2765 12 6 4.6013 -4.3135 -0.9169 13 1 4.7155 -3.5873 -1.7216 14 6 3.5966 -5.3878 -1.3382 15 6 5.9331 -4.9568 -0.6278 16 1 6.3730 -4.8697 0.3547 17 6 6.5894 -5.6574 -1.6174 18 7 6.0535 -5.7640 -2.8136 19 14 8.2406 -6.4543 -1.2593 20 1 8.0854 -7.4431 -0.1622 21 1 8.7336 -7.1417 -2.4798 22 1 9.2156 -5.4112 -0.8512 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8933 -0.5139 -0.8901 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.4026 -1.2310 4.3817 31 1 2.6334 -4.9225 -1.5473 32 1 3.9583 -5.8920 -2.2343 33 1 3.4823 -6.1140 -0.5334 34 1 6.5155 -6.2566 -3.5100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733711009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:53 Heat of formation + Delta-G solvation = -77.062534 kcal Electronic energy + Delta-G solvation = -18745.691842 eV Core-core repulsion = 15645.351004 eV Total energy + Delta-G solvation = -3100.340837 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.41000 -39.32246 -36.13925 -35.38976 -34.68291 -33.19736 -29.94981 -29.31290 -27.32290 -25.31979 -24.63570 -23.36500 -21.60640 -20.38563 -19.85128 -17.80017 -16.77652 -16.53998 -16.38112 -15.55624 -14.92517 -14.84957 -14.78203 -14.35030 -13.70379 -13.29572 -12.95868 -12.36493 -12.23748 -11.90976 -11.81530 -11.40416 -11.34505 -11.25315 -11.11409 -11.01257 -10.80152 -10.56158 -10.35664 -10.24667 -9.76906 -9.53628 -8.92806 -8.87733 -8.46135 -6.15610 -4.21885 1.13828 2.17317 2.54686 3.29770 3.32164 3.34301 3.50678 3.56438 4.17773 4.37022 4.48304 4.79864 4.93891 5.16512 5.17885 5.46196 5.46463 5.50747 5.64210 5.67618 5.76386 5.91812 6.07060 6.17567 6.22354 6.65258 6.91271 6.91792 7.13758 7.53854 7.61732 7.73130 7.92615 8.15505 8.61065 8.89911 9.43038 10.91972 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.032878 B = 0.005261 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.421818 B = 5321.261052 C = 5703.404298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.032 4.032 3 C -0.145 4.145 4 C 0.049 3.951 5 O -0.199 6.199 6 C 0.162 3.838 7 N -0.439 5.439 8 C -0.047 4.047 9 C 0.542 3.458 10 O -0.514 6.514 11 O -0.332 6.332 12 C 0.214 3.786 13 H 0.049 0.951 14 C -0.155 4.155 15 C -0.520 4.520 16 H 0.069 0.931 17 C 0.063 3.937 18 N -0.891 5.891 19 Si 0.913 3.087 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.136 0.864 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.255 0.745 31 H 0.016 0.984 32 H 0.101 0.899 33 H 0.038 0.962 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.948 11.836 8.032 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.050 4.050 3 C -0.203 4.203 4 C -0.007 4.007 5 O -0.085 6.085 6 C -0.067 4.067 7 N -0.167 5.167 8 C -0.165 4.165 9 C 0.385 3.615 10 O -0.405 6.405 11 O -0.246 6.246 12 C 0.161 3.839 13 H 0.066 0.934 14 C -0.212 4.212 15 C -0.558 4.558 16 H 0.088 0.912 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.740 3.260 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.200 1.200 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.154 0.846 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.271 0.729 31 H 0.035 0.965 32 H 0.119 0.881 33 H 0.057 0.943 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.591 11.299 7.727 16.714 hybrid contribution 0.505 -0.045 0.096 0.516 sum -9.086 11.254 7.823 16.444 Atomic orbital electron populations 1.21848 0.93134 1.02694 1.02562 1.20361 0.96770 0.96482 0.91398 1.21848 1.01840 0.94023 1.02551 1.23747 0.97319 0.95341 0.84266 1.84330 1.59280 1.48956 1.15969 1.28109 0.93881 0.85789 0.98917 1.70906 1.19637 1.24828 1.01318 1.20749 1.05772 0.98529 0.91436 1.19369 0.76651 0.79814 0.85625 1.90729 1.57690 1.67789 1.24276 1.86672 1.58361 1.37097 1.42491 1.20741 0.92720 0.90095 0.80298 0.93370 1.22169 0.96223 0.99621 1.03231 1.20994 1.02247 1.33686 0.98829 0.91242 1.24873 0.98536 0.95880 0.94623 1.69889 1.38798 1.41575 1.02591 0.86311 0.82615 0.79403 0.77676 1.19898 1.21036 1.19986 0.91074 0.92075 0.92306 0.84624 0.92015 0.91076 0.92304 0.72937 0.96491 0.88104 0.94327 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.18 37.16 0.34 -1.16 16 2 C -0.03 -0.41 3.24 -91.77 -0.30 -0.71 16 3 C -0.15 -1.53 9.18 37.16 0.34 -1.19 16 4 C 0.05 0.75 5.95 -35.05 -0.21 0.54 16 5 O -0.20 -2.53 10.72 6.57 0.07 -2.46 16 6 C 0.16 1.95 13.19 51.95 0.69 2.64 16 7 N -0.44 -7.70 11.36 -11.50 -0.13 -7.83 16 8 C -0.05 -0.89 7.04 -83.04 -0.58 -1.47 16 9 C 0.54 12.41 7.93 34.40 0.27 12.68 16 10 O -0.51 -12.02 13.73 -19.30 -0.26 -12.28 16 11 O -0.33 -8.62 9.88 -40.70 -0.40 -9.02 16 12 C 0.21 5.95 2.56 -27.88 -0.07 5.88 16 13 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 14 C -0.15 -4.04 9.33 37.16 0.35 -3.69 16 15 C -0.52 -15.07 8.90 -34.44 -0.31 -15.38 16 16 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.57 11.32 55.43 0.63 -24.95 16 19 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.14 2.09 5.52 -51.92 -0.29 1.80 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.26 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 2.77 6.07 -51.93 -0.32 2.45 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 297.73 15.07 4.49 4.49 Total: -1.00 -32.75 297.73 -4.53 -37.29 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -4.32 Total: -1.53 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 0.42 Total: -0.19 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.50 Total: -32.78 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.60 Total: -23.77 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.75 -4.53 -37.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.777 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds