Wall clock time and date at job start Mon Mar 30 2020 06:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47083 * 2 1 4 4 C 1.50700 * 109.47328 * 120.00202 * 2 1 3 5 5 O 1.34230 * 126.53139 * 299.97098 * 4 2 1 6 6 C 1.34056 * 108.24108 * 180.02562 * 5 4 2 7 7 N 1.29912 * 109.26568 * 0.02562 * 6 5 4 8 8 C 1.36105 * 108.47392 * 359.97438 * 7 6 5 9 9 C 1.47271 * 126.46232 * 179.73859 * 8 7 6 10 10 O 1.21538 * 120.00279 * 180.02562 * 9 8 7 11 11 O 1.34778 * 120.00059 * 0.02646 * 9 8 7 12 12 C 1.45200 * 117.00478 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46551 * 29.99479 * 12 11 9 14 14 C 1.53002 * 109.46717 * 270.00197 * 12 11 9 15 15 C 1.50695 * 109.47253 * 149.99873 * 12 11 9 16 16 H 1.08001 * 120.00112 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99643 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00290 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99792 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46796 * 60.00390 * 19 17 15 21 21 H 1.48494 * 109.47214 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47385 * 300.00791 * 19 17 15 23 23 H 1.08995 * 109.47413 * 59.99859 * 1 2 3 24 24 H 1.09009 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47136 * 299.99226 * 1 2 3 26 26 H 1.09009 * 109.46848 * 240.00199 * 2 1 3 27 27 H 1.08998 * 109.46961 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47029 * 300.00170 * 3 2 1 29 29 H 1.08995 * 109.47167 * 60.00286 * 3 2 1 30 30 H 1.08002 * 125.36393 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.47498 * 59.99943 * 14 12 11 32 32 H 1.09001 * 109.46810 * 179.97438 * 14 12 11 33 33 H 1.08999 * 109.47367 * 299.99681 * 14 12 11 34 34 H 0.97008 * 120.00027 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7907 -0.3678 2.5056 6 6 2.4137 -1.2481 3.3019 7 7 3.0335 -2.1243 2.5699 8 6 2.8187 -1.8218 1.2604 9 6 3.3433 -2.5544 0.0955 10 8 3.0765 -2.1787 -1.0292 11 8 4.1192 -3.6414 0.2765 12 6 4.6013 -4.3135 -0.9169 13 1 4.7155 -3.5873 -1.7216 14 6 3.5966 -5.3878 -1.3382 15 6 5.9331 -4.9568 -0.6278 16 1 6.3730 -4.8697 0.3547 17 6 6.5894 -5.6574 -1.6174 18 7 6.0535 -5.7640 -2.8136 19 14 8.2406 -6.4543 -1.2593 20 1 8.0854 -7.4431 -0.1622 21 1 8.7336 -7.1417 -2.4798 22 1 9.2156 -5.4112 -0.8512 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8933 -0.5139 -0.8901 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.4026 -1.2310 4.3817 31 1 2.6334 -4.9225 -1.5473 32 1 3.9583 -5.8920 -2.2343 33 1 3.4823 -6.1140 -0.5334 34 1 6.5155 -6.2566 -3.5100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733711009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:52 Heat of formation + Delta-G solvation = -100.128998 kcal Electronic energy + Delta-G solvation = -18746.692079 eV Core-core repulsion = 15645.351004 eV Total energy + Delta-G solvation = -3101.341074 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.57526 -41.17553 -37.83451 -36.62451 -35.93020 -35.32082 -31.83163 -30.78521 -28.14264 -27.50427 -26.17949 -24.40988 -23.34121 -21.84511 -21.30335 -19.40732 -18.61110 -17.97453 -17.92720 -17.11673 -16.68296 -16.46648 -15.93379 -15.79301 -14.89540 -14.76200 -14.29072 -14.15016 -13.94800 -13.28358 -13.10739 -13.05484 -12.85324 -12.75666 -12.52917 -12.42780 -12.34478 -12.28293 -12.13721 -11.77301 -11.64870 -11.35313 -11.05102 -10.62647 -10.12758 -8.31234 -6.48310 -0.16594 0.93244 1.36694 1.41786 1.44713 1.53086 1.89323 1.97933 2.38514 2.98993 3.13778 3.32668 3.75912 3.94313 4.02611 4.14212 4.42645 4.44460 4.55448 4.72138 4.73948 4.76126 4.84678 4.85464 5.01283 5.05135 5.17091 5.24894 5.27308 5.44484 5.56567 5.82035 5.99884 6.37609 6.56020 6.85687 7.22571 8.76621 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.032878 B = 0.005261 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.421818 B = 5321.261052 C = 5703.404298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.039 4.039 3 C -0.140 4.140 4 C 0.077 3.923 5 O -0.184 6.184 6 C 0.202 3.798 7 N -0.494 5.494 8 C -0.095 4.095 9 C 0.534 3.466 10 O -0.531 6.531 11 O -0.349 6.349 12 C 0.216 3.784 13 H 0.015 0.985 14 C -0.141 4.141 15 C -0.553 4.553 16 H 0.062 0.938 17 C 0.020 3.980 18 N -0.914 5.914 19 Si 0.985 3.015 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.269 1.269 23 H 0.091 0.909 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.315 0.685 31 H 0.025 0.975 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 13.003 9.756 19.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.057 4.057 3 C -0.197 4.197 4 C 0.019 3.981 5 O -0.070 6.070 6 C -0.027 4.027 7 N -0.222 5.222 8 C -0.211 4.211 9 C 0.379 3.621 10 O -0.423 6.423 11 O -0.265 6.265 12 C 0.163 3.837 13 H 0.032 0.968 14 C -0.198 4.198 15 C -0.590 4.590 16 H 0.080 0.920 17 C -0.180 4.180 18 N -0.552 5.552 19 Si 0.807 3.193 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.194 1.194 23 H 0.110 0.890 24 H 0.066 0.934 25 H 0.096 0.904 26 H 0.123 0.877 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.330 0.670 31 H 0.044 0.956 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.141 12.470 9.445 18.643 hybrid contribution 0.581 -0.295 -0.378 0.754 sum -9.560 12.175 9.067 17.940 Atomic orbital electron populations 1.21838 0.90701 1.02483 1.04572 1.20474 0.98702 0.97387 0.89175 1.21842 1.00858 0.92383 1.04589 1.24028 0.94812 0.93469 0.85747 1.84397 1.59012 1.48761 1.14855 1.29395 0.89993 0.82963 1.00382 1.70816 1.22632 1.27685 1.01051 1.20392 1.09067 1.00537 0.91092 1.20033 0.75817 0.79054 0.87146 1.90704 1.58193 1.67971 1.25429 1.86648 1.59656 1.38708 1.41485 1.20488 0.93331 0.89636 0.80232 0.96769 1.21986 0.96170 0.99153 1.02538 1.21220 1.03394 1.35332 0.99076 0.92006 1.25814 1.02336 0.95775 0.94098 1.69993 1.40313 1.41524 1.03361 0.85216 0.77469 0.78495 0.78112 1.18975 1.19663 1.19408 0.89012 0.93398 0.90366 0.87721 0.93565 0.88996 0.90331 0.67009 0.95582 0.89509 0.93929 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.18 71.98 0.66 -1.92 16 2 C -0.04 -0.97 3.24 -11.54 -0.04 -1.01 16 3 C -0.14 -2.65 9.18 71.98 0.66 -1.99 16 4 C 0.08 2.26 5.95 25.21 0.15 2.41 16 5 O -0.18 -4.11 10.72 0.58 0.01 -4.11 16 6 C 0.20 4.21 13.19 130.53 1.72 5.94 16 7 N -0.49 -17.03 11.36 -305.21 -3.47 -20.50 16 8 C -0.10 -3.67 7.04 40.38 0.28 -3.39 16 9 C 0.53 25.79 7.93 70.20 0.56 26.34 16 10 O -0.53 -26.41 13.73 19.71 0.27 -26.14 16 11 O -0.35 -19.16 9.88 -56.89 -0.56 -19.73 16 12 C 0.22 12.64 2.56 29.85 0.08 12.72 16 13 H 0.01 0.92 7.16 -2.39 -0.02 0.91 16 14 C -0.14 -7.64 9.33 71.98 0.67 -6.97 16 15 C -0.55 -33.17 8.90 25.60 0.23 -32.94 16 16 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 17 C 0.02 1.12 5.30 84.66 0.45 1.57 16 18 N -0.91 -53.42 11.32 21.45 0.24 -53.18 16 19 Si 0.98 44.16 29.54 68.60 2.03 46.19 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.10 3.33 5.52 -2.38 -0.01 3.32 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 30 H 0.32 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 4.93 6.07 -2.39 -0.01 4.92 16 33 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 Total: -1.00 -75.13 297.73 5.04 -70.09 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.10 Total: 6.60 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 5.42 Total: 0.77 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -3.22 Total: -73.67 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -0.28 Total: -49.97 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -75.13 5.04 -70.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.039 kcal (2) G-P(sol) polarization free energy of solvation -75.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds