Wall clock time and date at job start Mon Mar 30 2020 06:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47128 * 120.00051 * 2 1 3 5 5 O 1.34224 * 126.53064 * 299.97554 * 4 2 1 6 6 C 1.34060 * 108.24320 * 180.02562 * 5 4 2 7 7 N 1.29921 * 109.25909 * 0.26538 * 6 5 4 8 8 C 1.36105 * 108.47399 * 359.57614 * 7 6 5 9 9 C 1.47269 * 126.45794 * 180.19951 * 8 7 6 10 10 O 1.21534 * 119.99918 * 180.25372 * 9 8 7 11 11 O 1.34774 * 120.00374 * 0.26183 * 9 8 7 12 12 C 1.45196 * 117.00631 * 179.97438 * 11 9 8 13 13 H 1.09009 * 109.46715 * 329.99662 * 12 11 9 14 14 C 1.52998 * 109.47353 * 89.99097 * 12 11 9 15 15 C 1.50699 * 109.47387 * 209.99777 * 12 11 9 16 16 H 1.07997 * 119.99807 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99877 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00217 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 119.99851 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47097 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47257 * 119.99913 * 19 17 15 22 22 H 1.48495 * 109.47263 * 240.00298 * 19 17 15 23 23 H 1.08997 * 109.47316 * 300.00007 * 1 2 3 24 24 H 1.08998 * 109.46969 * 60.00255 * 1 2 3 25 25 H 1.09006 * 109.47182 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47168 * 240.00271 * 2 1 3 27 27 H 1.08998 * 109.47046 * 299.99698 * 3 2 1 28 28 H 1.08997 * 109.47543 * 60.00128 * 3 2 1 29 29 H 1.09000 * 109.46857 * 180.02562 * 3 2 1 30 30 H 1.08002 * 125.36658 * 179.97438 * 6 5 4 31 31 H 1.09009 * 109.46748 * 60.00585 * 14 12 11 32 32 H 1.09005 * 109.47149 * 180.02562 * 14 12 11 33 33 H 1.08995 * 109.47755 * 300.00692 * 14 12 11 34 34 H 0.96995 * 120.00330 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7906 -0.3678 2.5055 6 6 2.4135 -1.2480 3.3020 7 7 3.0377 -2.1213 2.5699 8 6 2.8184 -1.8220 1.2605 9 6 3.3378 -2.5583 0.0956 10 8 3.0709 -2.1828 -1.0290 11 8 4.1091 -3.6486 0.2767 12 6 4.5853 -4.3249 -0.9167 13 1 3.8619 -4.1940 -1.7216 14 6 5.9302 -3.7296 -1.3380 15 6 4.7546 -5.7942 -0.6277 16 1 4.5268 -6.1811 0.3545 17 6 5.1996 -6.6447 -1.6175 18 7 5.4766 -6.1737 -2.8137 19 14 5.4102 -8.4658 -1.2591 20 1 5.0349 -8.7393 0.1515 21 1 4.5357 -9.2530 -2.1650 22 1 6.8269 -8.8529 -1.4788 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 2.4024 -1.2309 4.3818 31 1 6.6536 -3.8605 -0.5331 32 1 6.2875 -4.2370 -2.2341 33 1 5.8078 -2.6669 -1.5470 34 1 5.7899 -6.7719 -3.5100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733711010.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:55 Heat of formation + Delta-G solvation = -77.134542 kcal Electronic energy + Delta-G solvation = -18745.888682 eV Core-core repulsion = 15645.544722 eV Total energy + Delta-G solvation = -3100.343960 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.41011 -39.32433 -36.14019 -35.39059 -34.68290 -33.19929 -29.95062 -29.31442 -27.32336 -25.32363 -24.63692 -23.36527 -21.60788 -20.38650 -19.85221 -17.80078 -16.77741 -16.54383 -16.38223 -15.56017 -14.92679 -14.85016 -14.78527 -14.34213 -13.70415 -13.29604 -12.96218 -12.36530 -12.23949 -11.91655 -11.81596 -11.40472 -11.34820 -11.25330 -11.10955 -11.04278 -10.79187 -10.56094 -10.32883 -10.24801 -9.77075 -9.54174 -8.92344 -8.86603 -8.47135 -6.16181 -4.22175 1.13820 2.17262 2.54666 3.26329 3.32332 3.37174 3.51275 3.56342 4.17780 4.36904 4.48286 4.79827 4.93853 5.16369 5.17682 5.46210 5.46399 5.50689 5.64182 5.67600 5.76355 5.91792 6.07024 6.17542 6.22324 6.65056 6.91035 6.91652 7.13603 7.53833 7.61888 7.72834 7.92555 8.15241 8.60998 8.90335 9.42872 10.91578 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.032902 B = 0.005260 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.806411 B = 5321.802154 C = 5704.803150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.032 4.032 3 C -0.145 4.145 4 C 0.049 3.951 5 O -0.199 6.199 6 C 0.162 3.838 7 N -0.439 5.439 8 C -0.047 4.047 9 C 0.542 3.458 10 O -0.514 6.514 11 O -0.331 6.331 12 C 0.213 3.787 13 H 0.049 0.951 14 C -0.155 4.155 15 C -0.518 4.518 16 H 0.070 0.930 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.912 3.088 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.281 1.281 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.136 0.864 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.255 0.745 31 H 0.038 0.962 32 H 0.101 0.899 33 H 0.016 0.984 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 13.311 8.062 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 C -0.202 4.202 4 C -0.007 4.007 5 O -0.085 6.085 6 C -0.067 4.067 7 N -0.167 5.167 8 C -0.165 4.165 9 C 0.385 3.615 10 O -0.405 6.405 11 O -0.246 6.246 12 C 0.161 3.839 13 H 0.066 0.934 14 C -0.212 4.212 15 C -0.556 4.556 16 H 0.089 0.911 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.739 3.261 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.207 1.207 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.154 0.846 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.271 0.729 31 H 0.057 0.943 32 H 0.119 0.881 33 H 0.035 0.965 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.507 12.801 7.767 16.750 hybrid contribution -0.116 -0.489 0.068 0.507 sum -7.624 12.312 7.835 16.465 Atomic orbital electron populations 1.21849 0.93104 1.02760 1.02549 1.20360 0.96818 0.96434 0.91398 1.21846 1.01766 0.94062 1.02564 1.23744 0.97318 0.95344 0.84268 1.84329 1.59322 1.48914 1.15967 1.28113 0.93750 0.85919 0.98916 1.70910 1.19706 1.24754 1.01318 1.20748 1.05836 0.98465 0.91437 1.19367 0.76420 0.80047 0.85625 1.90728 1.58056 1.67422 1.24279 1.86671 1.58784 1.36672 1.42482 1.20754 0.92409 0.90460 0.80310 0.93363 1.22168 0.98641 0.97200 1.03229 1.21074 1.45540 0.90112 0.98861 0.91133 1.24880 0.94853 0.99618 0.94624 1.69904 1.44826 1.35511 1.02614 0.86206 0.77832 0.83421 0.78626 1.19428 1.20762 1.20700 0.92309 0.91076 0.92014 0.84626 0.91078 0.92299 0.92077 0.72935 0.94324 0.88107 0.96487 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.18 37.16 0.34 -1.18 16 2 C -0.03 -0.41 3.24 -91.77 -0.30 -0.71 16 3 C -0.15 -1.50 9.18 37.16 0.34 -1.16 16 4 C 0.05 0.75 5.95 -35.05 -0.21 0.54 16 5 O -0.20 -2.53 10.72 6.57 0.07 -2.46 16 6 C 0.16 1.95 13.19 51.95 0.69 2.64 16 7 N -0.44 -7.70 11.36 -11.50 -0.13 -7.83 16 8 C -0.05 -0.89 7.04 -83.04 -0.58 -1.47 16 9 C 0.54 12.41 7.93 34.40 0.27 12.68 16 10 O -0.51 -12.02 13.73 -19.29 -0.26 -12.28 16 11 O -0.33 -8.61 9.87 -40.69 -0.40 -9.02 16 12 C 0.21 5.92 2.56 -27.88 -0.07 5.85 16 13 H 0.05 1.44 7.16 -51.92 -0.37 1.07 16 14 C -0.15 -4.03 9.33 37.16 0.35 -3.69 16 15 C -0.52 -15.02 8.90 -34.44 -0.31 -15.33 16 16 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -25.57 11.32 55.43 0.63 -24.95 16 19 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.14 2.09 5.52 -51.93 -0.29 1.80 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.26 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.10 2.77 6.07 -51.93 -0.32 2.45 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 297.73 15.07 4.49 4.49 Total: -1.00 -32.80 297.73 -4.53 -37.33 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -4.32 Total: -1.59 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 0.42 Total: -0.18 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.50 Total: -32.78 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.60 Total: -23.76 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.80 -4.53 -37.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711010.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.800 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds