Wall clock time and date at job start Mon Mar 30 2020 06:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47028 * 2 1 4 4 C 1.50693 * 109.46859 * 179.97438 * 3 2 1 5 5 N 1.29926 * 125.37169 * 90.00110 * 4 3 2 6 6 C 1.36099 * 108.47665 * 180.02562 * 5 4 3 7 7 C 1.47275 * 126.46063 * 179.97438 * 6 5 4 8 8 O 1.21529 * 119.99872 * 179.97438 * 7 6 5 9 9 O 1.34775 * 119.99897 * 359.97438 * 7 6 5 10 10 C 1.45194 * 117.00202 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.46869 * 30.00481 * 10 9 7 12 12 C 1.52997 * 109.47339 * 269.99999 * 10 9 7 13 13 C 1.50706 * 109.47297 * 149.99618 * 10 9 7 14 14 H 1.07998 * 119.99629 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99955 * 179.97438 * 13 10 9 16 16 N 1.31510 * 120.00308 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99908 * 180.02562 * 15 13 10 18 18 H 1.48507 * 109.46754 * 90.00468 * 17 15 13 19 19 H 1.48498 * 109.47278 * 210.00299 * 17 15 13 20 20 H 1.48498 * 109.47109 * 330.00728 * 17 15 13 21 21 C 1.36177 * 107.08023 * 0.22797 * 6 5 4 22 22 O 1.34061 * 125.37232 * 270.04260 * 4 3 2 23 23 H 1.09004 * 109.47208 * 300.00124 * 1 2 3 24 24 H 1.09006 * 109.47097 * 59.99613 * 1 2 3 25 25 H 1.09005 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46881 * 240.00256 * 2 1 3 27 27 H 1.08998 * 109.46831 * 120.00122 * 2 1 3 28 28 H 1.09003 * 109.46589 * 60.00291 * 3 2 1 29 29 H 1.08994 * 109.47059 * 300.00103 * 3 2 1 30 30 H 1.09002 * 109.47153 * 59.99705 * 12 10 9 31 31 H 1.09001 * 109.46832 * 299.99896 * 12 10 9 32 32 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 33 33 H 0.96998 * 120.00365 * 179.97438 * 16 15 13 34 34 H 1.08001 * 126.52853 * 179.74629 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.2995 1.4423 -1.0585 6 6 5.6016 1.4418 -0.6624 7 6 6.7836 1.4409 -1.5409 8 8 7.8991 1.4409 -1.0586 9 8 6.6282 1.4400 -2.8797 10 6 7.8373 1.4398 -3.6837 11 1 8.6326 0.9263 -3.1435 12 6 8.2617 2.8821 -3.9670 13 6 7.5744 0.7284 -4.9860 14 1 6.5963 0.3180 -5.1892 15 6 8.5822 0.6026 -5.9184 16 7 9.7731 1.1028 -5.6711 17 14 8.2562 -0.2785 -7.5330 18 1 7.7818 0.7003 -8.5440 19 1 9.5094 -0.9158 -8.0110 20 1 7.2182 -1.3204 -7.3275 21 6 5.6054 1.4364 0.6994 22 8 4.3225 1.4418 1.0941 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9563 -0.8899 30 1 8.4518 3.3966 -3.0250 31 1 7.4662 3.3955 -4.5072 32 1 9.1696 2.8819 -4.5702 33 1 10.4823 1.0139 -6.3269 34 1 6.4751 1.4307 1.3397 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802084486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:18 Heat of formation + Delta-G solvation = -81.062588 kcal Electronic energy + Delta-G solvation = -18140.172209 eV Core-core repulsion = 15039.657916 eV Total energy + Delta-G solvation = -3100.514293 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.40492 -39.30558 -35.78294 -35.61603 -34.64828 -33.19885 -30.79643 -29.53904 -27.31119 -25.32249 -24.62249 -22.48639 -21.66343 -20.80768 -19.79182 -17.88710 -16.81103 -16.58962 -16.47493 -15.60373 -15.21586 -14.90946 -14.84411 -14.38211 -13.72449 -13.55389 -12.95467 -12.46381 -12.24782 -12.09424 -11.87843 -11.65375 -11.30357 -11.10974 -11.03393 -10.98658 -10.80544 -10.65115 -10.36764 -10.26753 -9.95672 -9.53963 -8.99817 -8.88684 -8.46825 -6.15918 -4.22209 1.12962 2.09024 2.53001 3.27680 3.30997 3.34608 3.44747 3.55411 3.95713 4.36241 4.63557 4.67972 4.83123 4.98971 5.17134 5.22391 5.34341 5.44623 5.47028 5.56651 5.62769 5.79464 5.87960 5.99364 6.16159 6.63861 6.90886 6.91401 7.11924 7.53249 7.61930 7.72768 7.92180 8.15003 8.60195 8.89684 9.42787 10.91803 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.025170 B = 0.004786 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.147963 B = 5849.505379 C = 6712.708508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.021 4.021 4 C 0.187 3.813 5 N -0.434 5.434 6 C -0.040 4.040 7 C 0.539 3.461 8 O -0.515 6.515 9 O -0.332 6.332 10 C 0.213 3.787 11 H 0.048 0.952 12 C -0.155 4.155 13 C -0.519 4.519 14 H 0.070 0.930 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.913 3.087 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.007 3.993 22 O -0.198 6.198 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.016 0.984 31 H 0.038 0.962 32 H 0.101 0.899 33 H 0.266 0.734 34 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.689 0.294 12.851 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.059 4.059 4 C -0.023 4.023 5 N -0.163 5.163 6 C -0.159 4.159 7 C 0.383 3.617 8 O -0.406 6.406 9 O -0.246 6.246 10 C 0.161 3.839 11 H 0.066 0.934 12 C -0.213 4.213 13 C -0.557 4.557 14 H 0.088 0.912 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.740 3.260 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.066 4.066 22 O -0.085 6.085 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -14.378 0.315 12.217 18.870 hybrid contribution 0.528 -0.352 -0.164 0.655 sum -13.850 -0.037 12.053 18.361 Atomic orbital electron populations 1.21750 0.94627 1.02261 1.02151 1.21567 0.96474 0.94761 1.03455 1.20200 0.80708 0.99615 1.05373 1.26434 0.96477 1.01079 0.78284 1.70948 1.00642 1.15524 1.29197 1.21080 0.91461 1.11509 0.91829 1.19408 0.85619 0.73269 0.83453 1.90821 1.25208 1.47519 1.77030 1.86668 1.42256 1.80677 1.15023 1.20754 0.79748 0.94936 0.88503 0.93394 1.22172 1.03374 0.96433 0.99282 1.21033 0.98603 1.36300 0.99740 0.91167 1.24879 0.94618 0.95609 0.98846 1.69896 1.02215 1.44960 1.35791 0.86251 0.77758 0.79656 0.82348 1.20322 1.20974 1.19594 1.25260 0.84911 1.00989 0.95404 1.84363 1.16506 1.69527 1.38063 0.92502 0.92167 0.92193 0.90662 0.91445 0.88817 0.87310 0.96502 0.94294 0.88086 0.92405 0.75081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 3 C -0.02 -0.18 5.84 -27.89 -0.16 -0.35 16 4 C 0.19 2.51 7.56 -13.09 -0.10 2.42 16 5 N -0.43 -7.75 11.36 -7.67 -0.09 -7.83 16 6 C -0.04 -0.75 7.04 -83.04 -0.58 -1.34 16 7 C 0.54 12.39 7.93 34.40 0.27 12.66 16 8 O -0.51 -12.42 16.15 -19.29 -0.31 -12.73 16 9 O -0.33 -8.64 9.88 -40.70 -0.40 -9.04 16 10 C 0.21 5.96 2.56 -27.88 -0.07 5.89 16 11 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16 12 C -0.15 -4.07 9.33 37.16 0.35 -3.72 16 13 C -0.52 -15.10 8.90 -34.44 -0.31 -15.40 16 14 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.70 11.32 55.43 0.63 -25.07 16 17 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.01 0.10 11.95 29.99 0.36 0.46 16 22 O -0.20 -2.56 10.72 6.57 0.07 -2.49 16 23 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.10 2.79 6.07 -51.93 -0.32 2.47 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.23 2.44 8.06 -52.49 -0.42 2.01 16 LS Contribution 303.21 15.07 4.57 4.57 Total: -1.00 -33.10 303.21 -5.14 -38.24 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -4.46 Total: -2.73 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.13 Total: 0.56 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.54 Total: -32.91 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.64 Total: -24.26 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.10 -5.14 -38.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802084486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.819 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds