Wall clock time and date at job start Mon Mar 30 2020 06:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47028 * 2 1 4 4 C 1.50693 * 109.46859 * 179.97438 * 3 2 1 5 5 N 1.29926 * 125.37169 * 90.00110 * 4 3 2 6 6 C 1.36099 * 108.47665 * 180.02562 * 5 4 3 7 7 C 1.47275 * 126.46063 * 179.97438 * 6 5 4 8 8 O 1.21529 * 119.99872 * 179.97438 * 7 6 5 9 9 O 1.34775 * 119.99897 * 359.97438 * 7 6 5 10 10 C 1.45194 * 117.00202 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.46869 * 30.00481 * 10 9 7 12 12 C 1.52997 * 109.47339 * 269.99999 * 10 9 7 13 13 C 1.50706 * 109.47297 * 149.99618 * 10 9 7 14 14 H 1.07998 * 119.99629 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99955 * 179.97438 * 13 10 9 16 16 N 1.31510 * 120.00308 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99908 * 180.02562 * 15 13 10 18 18 H 1.48507 * 109.46754 * 90.00468 * 17 15 13 19 19 H 1.48498 * 109.47278 * 210.00299 * 17 15 13 20 20 H 1.48498 * 109.47109 * 330.00728 * 17 15 13 21 21 C 1.36177 * 107.08023 * 0.22797 * 6 5 4 22 22 O 1.34061 * 125.37232 * 270.04260 * 4 3 2 23 23 H 1.09004 * 109.47208 * 300.00124 * 1 2 3 24 24 H 1.09006 * 109.47097 * 59.99613 * 1 2 3 25 25 H 1.09005 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46881 * 240.00256 * 2 1 3 27 27 H 1.08998 * 109.46831 * 120.00122 * 2 1 3 28 28 H 1.09003 * 109.46589 * 60.00291 * 3 2 1 29 29 H 1.08994 * 109.47059 * 300.00103 * 3 2 1 30 30 H 1.09002 * 109.47153 * 59.99705 * 12 10 9 31 31 H 1.09001 * 109.46832 * 299.99896 * 12 10 9 32 32 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 33 33 H 0.96998 * 120.00365 * 179.97438 * 16 15 13 34 34 H 1.08001 * 126.52853 * 179.74629 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.2995 1.4423 -1.0585 6 6 5.6016 1.4418 -0.6624 7 6 6.7836 1.4409 -1.5409 8 8 7.8991 1.4409 -1.0586 9 8 6.6282 1.4400 -2.8797 10 6 7.8373 1.4398 -3.6837 11 1 8.6326 0.9263 -3.1435 12 6 8.2617 2.8821 -3.9670 13 6 7.5744 0.7284 -4.9860 14 1 6.5963 0.3180 -5.1892 15 6 8.5822 0.6026 -5.9184 16 7 9.7731 1.1028 -5.6711 17 14 8.2562 -0.2785 -7.5330 18 1 7.7818 0.7003 -8.5440 19 1 9.5094 -0.9158 -8.0110 20 1 7.2182 -1.3204 -7.3275 21 6 5.6054 1.4364 0.6994 22 8 4.3225 1.4418 1.0941 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9563 -0.8899 30 1 8.4518 3.3966 -3.0250 31 1 7.4662 3.3955 -4.5072 32 1 9.1696 2.8819 -4.5702 33 1 10.4823 1.0139 -6.3269 34 1 6.4751 1.4307 1.3397 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802084486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:17 Heat of formation + Delta-G solvation = -103.976987 kcal Electronic energy + Delta-G solvation = -18141.165852 eV Core-core repulsion = 15039.657916 eV Total energy + Delta-G solvation = -3101.507936 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.58252 -41.18472 -37.71664 -36.45673 -35.80416 -35.31864 -32.01553 -31.51058 -28.18837 -27.50883 -26.16261 -23.52392 -23.07458 -22.08509 -21.39351 -19.49175 -18.63143 -18.09494 -17.92075 -17.25107 -16.72645 -16.47146 -15.95653 -15.72536 -15.02151 -14.76806 -14.30404 -14.19436 -13.97052 -13.29252 -13.06006 -13.01500 -12.83741 -12.77267 -12.49913 -12.43471 -12.19294 -12.10155 -11.95504 -11.75062 -11.65457 -11.59115 -11.05793 -10.63377 -10.19174 -8.31925 -6.49003 -0.14945 0.79555 1.38427 1.42631 1.42965 1.54148 1.81730 1.94838 2.37202 2.84085 2.98507 3.61688 3.77269 4.03665 4.07856 4.24265 4.41296 4.43533 4.54627 4.70996 4.73134 4.74026 4.78162 4.92988 4.95614 5.08576 5.25803 5.29057 5.42573 5.47068 5.55392 5.79584 5.98133 6.35964 6.55446 6.83665 7.21997 8.76244 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.025170 B = 0.004786 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.147963 B = 5849.505379 C = 6712.708508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C -0.021 4.021 4 C 0.206 3.794 5 N -0.482 5.482 6 C -0.092 4.092 7 C 0.535 3.465 8 O -0.537 6.537 9 O -0.349 6.349 10 C 0.215 3.785 11 H 0.014 0.986 12 C -0.141 4.141 13 C -0.552 4.552 14 H 0.062 0.938 15 C 0.019 3.981 16 N -0.915 5.915 17 Si 0.985 3.015 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.268 1.268 21 C 0.054 3.946 22 O -0.184 6.184 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.129 0.871 29 H 0.114 0.886 30 H 0.026 0.974 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.273 0.727 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.428 0.187 13.754 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.059 4.059 4 C -0.004 4.004 5 N -0.211 5.211 6 C -0.208 4.208 7 C 0.381 3.619 8 O -0.429 6.429 9 O -0.264 6.264 10 C 0.162 3.838 11 H 0.032 0.968 12 C -0.199 4.199 13 C -0.589 4.589 14 H 0.080 0.920 15 C -0.180 4.180 16 N -0.553 5.553 17 Si 0.808 3.192 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.193 1.193 21 C -0.020 4.020 22 O -0.070 6.070 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.148 0.852 29 H 0.132 0.868 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -16.125 0.219 13.133 20.797 hybrid contribution 1.014 -0.319 -0.302 1.105 sum -15.111 -0.100 12.830 19.823 Atomic orbital electron populations 1.21726 0.92800 1.02750 1.03083 1.21540 0.97955 0.94001 1.02492 1.20560 0.77431 1.00493 1.07378 1.27306 0.97773 0.98012 0.77312 1.70867 1.00761 1.18034 1.31479 1.20728 0.90664 1.16641 0.92785 1.20043 0.87090 0.72150 0.82618 1.90782 1.26485 1.48689 1.76925 1.86648 1.41187 1.81605 1.16994 1.20509 0.79734 0.95295 0.88282 0.96779 1.21993 1.02678 0.95763 0.99480 1.21252 0.98846 1.37934 1.00907 0.91979 1.25819 0.94043 0.95843 1.02344 1.69996 1.02983 1.45143 1.37142 0.85155 0.78026 0.78557 0.77497 1.19040 1.19770 1.19261 1.25838 0.86109 0.96247 0.93840 1.84442 1.15936 1.68995 1.37601 0.90752 0.92053 0.91989 0.93083 0.91038 0.85244 0.86806 0.95534 0.93840 0.89508 0.91766 0.71547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.73 5.92 30.60 0.18 -1.55 16 3 C -0.02 -0.31 5.84 29.85 0.17 -0.14 16 4 C 0.21 5.17 7.56 88.39 0.67 5.84 16 5 N -0.48 -17.18 11.36 -293.09 -3.33 -20.51 16 6 C -0.09 -3.43 7.04 40.38 0.28 -3.15 16 7 C 0.54 25.44 7.93 70.20 0.56 26.00 16 8 O -0.54 -26.71 16.15 19.74 0.32 -26.40 16 9 O -0.35 -18.99 9.88 -56.86 -0.56 -19.56 16 10 C 0.21 12.55 2.56 29.85 0.08 12.63 16 11 H 0.01 0.92 7.16 -2.39 -0.02 0.90 16 12 C -0.14 -7.66 9.33 71.98 0.67 -6.99 16 13 C -0.55 -33.09 8.90 25.60 0.23 -32.86 16 14 H 0.06 3.72 7.81 -2.91 -0.02 3.69 16 15 C 0.02 1.10 5.30 84.65 0.45 1.55 16 16 N -0.91 -53.49 11.32 21.45 0.24 -53.24 16 17 Si 0.99 44.14 29.54 68.60 2.03 46.17 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 C 0.05 1.40 11.95 67.34 0.80 2.21 16 22 O -0.18 -4.22 10.72 0.59 0.01 -4.21 16 23 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 24 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 25 H 0.06 0.59 8.14 -2.38 -0.02 0.58 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.13 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.09 4.93 6.07 -2.38 -0.01 4.92 16 33 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.27 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -74.23 303.21 4.61 -69.62 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.10 Total: 5.29 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 4.81 Total: 2.83 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -3.09 Total: -73.75 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.24 Total: -50.16 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -74.23 4.61 -69.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802084486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.354 kcal (2) G-P(sol) polarization free energy of solvation -74.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds