Wall clock time and date at job start Mon Mar 30 2020 06:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47306 * 2 1 4 4 C 1.50699 * 109.47318 * 179.97438 * 3 2 1 5 5 N 1.29924 * 125.36790 * 90.00336 * 4 3 2 6 6 C 1.36106 * 108.47427 * 180.02562 * 5 4 3 7 7 C 1.47270 * 126.45611 * 179.97438 * 6 5 4 8 8 O 1.21541 * 119.99460 * 179.97438 * 7 6 5 9 9 O 1.34775 * 120.00508 * 359.97438 * 7 6 5 10 10 C 1.45199 * 116.99979 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47112 * 329.99584 * 10 9 7 12 12 C 1.53002 * 109.47204 * 89.99883 * 10 9 7 13 13 C 1.50698 * 109.46903 * 209.99811 * 10 9 7 14 14 H 1.08000 * 120.00257 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00387 * 179.97438 * 13 10 9 16 16 N 1.31517 * 119.99509 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 120.00412 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47270 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47266 * 119.99798 * 17 15 13 20 20 H 1.48504 * 109.47070 * 240.00049 * 17 15 13 21 21 C 1.36175 * 107.07894 * 359.97438 * 6 5 4 22 22 O 1.34050 * 125.37285 * 270.02334 * 4 3 2 23 23 H 1.08994 * 109.47515 * 299.99923 * 1 2 3 24 24 H 1.09001 * 109.46919 * 60.00326 * 1 2 3 25 25 H 1.09003 * 109.46948 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47431 * 239.99591 * 2 1 3 27 27 H 1.09001 * 109.47247 * 120.00382 * 2 1 3 28 28 H 1.09001 * 109.47324 * 59.99986 * 3 2 1 29 29 H 1.09001 * 109.46865 * 299.99707 * 3 2 1 30 30 H 1.08999 * 109.46950 * 179.97438 * 12 10 9 31 31 H 1.08995 * 109.47079 * 299.99961 * 12 10 9 32 32 H 1.09004 * 109.47106 * 59.99937 * 12 10 9 33 33 H 0.96995 * 119.99681 * 180.02562 * 16 15 13 34 34 H 1.07995 * 126.52337 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2995 1.4424 -1.0585 6 6 5.6016 1.4418 -0.6624 7 6 6.7835 1.4410 -1.5410 8 8 7.8991 1.4411 -1.0588 9 8 6.6281 1.4402 -2.8798 10 6 7.8372 1.4389 -3.6838 11 1 8.6329 1.9526 -3.1442 12 6 8.2610 -0.0041 -3.9652 13 6 7.5746 2.1485 -4.9870 14 1 6.5970 2.5598 -5.1905 15 6 8.5828 2.2737 -5.9192 16 7 9.7735 1.7733 -5.6712 17 14 8.2575 3.1540 -7.5343 18 1 6.8482 3.6210 -7.5685 19 1 9.1689 4.3202 -7.6548 20 1 8.4966 2.2201 -8.6639 21 6 5.6055 1.4422 0.6993 22 8 4.3225 1.4422 1.0940 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9562 -0.8900 30 1 9.1684 -0.0051 -4.5691 31 1 8.4509 -0.5174 -3.0226 32 1 7.4653 -0.5178 -4.5048 33 1 10.4828 1.8617 -6.3268 34 1 6.4751 1.4423 1.3396 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802084487.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:20 Heat of formation + Delta-G solvation = -104.018222 kcal Electronic energy + Delta-G solvation = -18138.245862 eV Core-core repulsion = 15036.736139 eV Total energy + Delta-G solvation = -3101.509724 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.58368 -41.18338 -37.71571 -36.45674 -35.80390 -35.31866 -32.01595 -31.51158 -28.18863 -27.51123 -26.16332 -23.52513 -23.07257 -22.08801 -21.39110 -19.49325 -18.63434 -18.05299 -17.96771 -17.25299 -16.71814 -16.46900 -15.95675 -15.72519 -15.02255 -14.76905 -14.31743 -14.17354 -13.97980 -13.29753 -13.05603 -13.01667 -12.85367 -12.77032 -12.49378 -12.43214 -12.18240 -12.09911 -11.95576 -11.75106 -11.66071 -11.58978 -11.04593 -10.63961 -10.19201 -8.32186 -6.49072 -0.14966 0.79581 1.38420 1.41424 1.42837 1.55561 1.81965 1.94654 2.37234 2.83998 2.98306 3.61695 3.77223 4.03785 4.07911 4.24317 4.41340 4.43450 4.54641 4.71168 4.72982 4.73920 4.78106 4.93040 4.95756 5.08419 5.25859 5.29146 5.42767 5.47301 5.55265 5.79556 5.98063 6.35952 6.55635 6.83688 7.21953 8.76243 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.027197 B = 0.004611 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.288662 B = 6071.161665 C = 6698.432086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C -0.021 4.021 4 C 0.206 3.794 5 N -0.482 5.482 6 C -0.092 4.092 7 C 0.535 3.465 8 O -0.537 6.537 9 O -0.349 6.349 10 C 0.215 3.785 11 H 0.015 0.985 12 C -0.141 4.141 13 C -0.551 4.551 14 H 0.062 0.938 15 C 0.019 3.981 16 N -0.915 5.915 17 Si 0.986 3.014 18 H -0.267 1.267 19 H -0.272 1.272 20 H -0.268 1.268 21 C 0.054 3.946 22 O -0.184 6.184 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.129 0.871 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.025 0.975 32 H 0.042 0.958 33 H 0.273 0.727 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.418 -1.796 13.760 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.059 4.059 4 C -0.004 4.004 5 N -0.211 5.211 6 C -0.208 4.208 7 C 0.381 3.619 8 O -0.429 6.429 9 O -0.264 6.264 10 C 0.162 3.838 11 H 0.032 0.968 12 C -0.199 4.199 13 C -0.588 4.588 14 H 0.080 0.920 15 C -0.181 4.181 16 N -0.553 5.553 17 Si 0.808 3.192 18 H -0.191 1.191 19 H -0.197 1.197 20 H -0.193 1.193 21 C -0.020 4.020 22 O -0.070 6.070 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.147 0.853 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -16.120 -1.821 13.138 20.875 hybrid contribution 1.024 0.265 -0.299 1.099 sum -15.096 -1.556 12.839 19.879 Atomic orbital electron populations 1.21724 0.92839 1.02766 1.03053 1.21534 0.97916 0.93920 1.02543 1.20563 0.77441 1.00571 1.07334 1.27301 0.97770 0.98008 0.77315 1.70870 1.00761 1.18038 1.31477 1.20728 0.90662 1.16641 0.92786 1.20045 0.87091 0.72147 0.82619 1.90785 1.26480 1.48696 1.76929 1.86650 1.41185 1.81604 1.16992 1.20513 0.79735 0.95291 0.88297 0.96766 1.21992 1.02685 0.95775 0.99466 1.21282 0.98856 1.37863 1.00838 0.91971 1.25830 0.94058 0.95847 1.02375 1.70008 1.02991 1.45128 1.37151 0.85099 0.78603 0.78142 0.77330 1.19110 1.19699 1.19318 1.25837 0.86105 0.96248 0.93837 1.84439 1.15935 1.68996 1.37601 0.90807 0.92088 0.91930 0.92983 0.90996 0.85304 0.86872 0.89508 0.95545 0.93842 0.91777 0.71545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.68 16 2 C -0.12 -1.68 5.92 30.59 0.18 -1.50 16 3 C -0.02 -0.32 5.84 29.85 0.17 -0.15 16 4 C 0.21 5.18 7.56 88.39 0.67 5.85 16 5 N -0.48 -17.19 11.36 -293.10 -3.33 -20.52 16 6 C -0.09 -3.43 7.04 40.38 0.28 -3.14 16 7 C 0.54 25.44 7.93 70.20 0.56 25.99 16 8 O -0.54 -26.71 16.15 19.70 0.32 -26.40 16 9 O -0.35 -18.99 9.88 -56.86 -0.56 -19.56 16 10 C 0.21 12.54 2.56 29.85 0.08 12.61 16 11 H 0.01 0.92 7.16 -2.39 -0.02 0.91 16 12 C -0.14 -7.67 9.33 71.98 0.67 -6.99 16 13 C -0.55 -33.02 8.90 25.60 0.23 -32.80 16 14 H 0.06 3.73 7.81 -2.91 -0.02 3.71 16 15 C 0.02 1.06 5.30 84.65 0.45 1.51 16 16 N -0.92 -53.47 11.32 21.45 0.24 -53.22 16 17 Si 0.99 44.15 29.54 68.60 2.03 46.18 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 C 0.05 1.41 11.95 67.34 0.80 2.21 16 22 O -0.18 -4.22 10.72 0.67 0.01 -4.21 16 23 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.09 4.93 6.07 -2.39 -0.01 4.92 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 34 H 0.27 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -74.24 303.21 4.61 -69.64 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.10 Total: 5.17 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 4.81 Total: 2.91 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -3.09 Total: -73.74 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -0.24 Total: -50.16 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -74.24 4.61 -69.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802084487.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.382 kcal (2) G-P(sol) polarization free energy of solvation -74.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds