Wall clock time and date at job start Mon Mar 30 2020 06:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.46966 * 2 1 4 4 N 1.30632 * 125.41572 * 89.99642 * 3 2 1 5 5 C 1.33649 * 109.00694 * 179.97438 * 4 3 2 6 6 C 1.50705 * 126.27861 * 180.02562 * 5 4 3 7 7 C 1.36440 * 107.44735 * 0.02562 * 5 4 3 8 8 C 1.46534 * 126.65368 * 179.97438 * 7 5 4 9 9 O 1.21605 * 120.00368 * 0.02562 * 8 7 5 10 10 O 1.34891 * 119.99462 * 180.02562 * 8 7 5 11 11 C 1.45206 * 116.99296 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47146 * 329.99248 * 11 10 8 13 13 C 1.52997 * 109.47226 * 90.00222 * 11 10 8 14 14 C 1.50706 * 109.46448 * 210.00014 * 11 10 8 15 15 H 1.07999 * 120.00196 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 11 19 19 H 1.48490 * 109.47405 * 60.00219 * 18 16 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47399 * 299.99813 * 18 16 14 22 22 O 1.33656 * 125.41214 * 270.31001 * 3 2 1 23 23 H 1.09001 * 109.47070 * 60.00787 * 1 2 3 24 24 H 1.08998 * 109.46922 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47144 * 300.00247 * 1 2 3 26 26 H 1.08999 * 109.47144 * 239.99753 * 2 1 3 27 27 H 1.09001 * 109.47070 * 119.99212 * 2 1 3 28 28 H 1.09002 * 109.46611 * 270.00090 * 6 5 4 29 29 H 1.09002 * 109.47249 * 29.99940 * 6 5 4 30 30 H 1.08998 * 109.47499 * 150.00138 * 6 5 4 31 31 H 1.09002 * 109.47153 * 299.99431 * 13 11 10 32 32 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 33 33 H 1.09004 * 109.47261 * 59.99603 * 13 11 10 34 34 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2846 2.1346 1.0646 5 6 2.7124 3.3432 0.6871 6 6 3.1126 4.4730 1.6006 7 6 2.7206 3.3665 -0.6771 8 6 3.1176 4.4897 -1.5304 9 8 3.4873 5.5337 -1.0284 10 8 3.0729 4.3653 -2.8729 11 6 3.4811 5.5183 -3.6555 12 1 3.2594 6.4304 -3.1015 13 6 4.9841 5.4414 -3.9310 14 6 2.7307 5.5294 -4.9624 15 1 2.0187 4.7479 -5.1828 16 6 2.9533 6.5373 -5.8765 17 7 3.8208 7.4886 -5.6082 18 14 2.0227 6.5514 -7.4961 19 1 0.5640 6.6258 -7.2282 20 1 2.4402 7.7304 -8.2966 21 1 2.3245 5.3089 -8.2514 22 8 2.2849 2.1530 -1.0893 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5137 0.8901 28 1 2.2403 5.0884 1.8209 29 1 3.5134 4.0654 2.5286 30 1 3.8734 5.0825 1.1130 31 1 5.5269 5.4334 -2.9858 32 1 5.2904 6.3067 -4.5189 33 1 5.2058 4.5292 -4.4850 34 1 3.9776 8.1974 -6.2515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815948832.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:15 Heat of formation + Delta-G solvation = -79.254241 kcal Electronic energy + Delta-G solvation = -18530.379676 eV Core-core repulsion = 15429.943799 eV Total energy + Delta-G solvation = -3100.435877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.38433 -39.43580 -36.07296 -35.15564 -34.33272 -33.30338 -30.83734 -29.70711 -27.78899 -25.38510 -25.08816 -22.70765 -21.46399 -20.99214 -20.00459 -17.79856 -16.96588 -16.66284 -16.05840 -15.56492 -15.02136 -14.78936 -14.54267 -14.13877 -13.26611 -13.18448 -13.08243 -12.79339 -12.30543 -12.24400 -12.02814 -11.91437 -11.46113 -11.31318 -11.11575 -10.96307 -10.89431 -10.82274 -10.45292 -10.32815 -9.97232 -9.66280 -8.99602 -8.77045 -8.53107 -6.22474 -4.29709 0.86764 2.38809 2.42767 3.24745 3.26253 3.28210 3.30294 3.48850 3.87294 4.30653 4.67285 4.80916 4.86292 4.95939 5.10695 5.31206 5.49435 5.50752 5.64552 5.73093 5.76239 5.87181 5.92264 5.99159 6.33219 6.54605 6.81358 6.83245 6.99860 7.49525 7.58292 7.64439 7.82216 8.06046 8.44631 8.79123 9.35511 10.85015 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.005333 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.654602 B = 5248.991247 C = 6001.317637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.029 4.029 3 C 0.215 3.785 4 N -0.489 5.489 5 C 0.077 3.923 6 C -0.080 4.080 7 C -0.085 4.085 8 C 0.545 3.455 9 O -0.491 6.491 10 O -0.342 6.342 11 C 0.215 3.785 12 H 0.051 0.949 13 C -0.156 4.156 14 C -0.523 4.523 15 H 0.069 0.931 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.914 3.086 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.274 1.274 22 O -0.170 6.170 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.017 0.983 32 H 0.102 0.898 33 H 0.038 0.962 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.443 -11.849 10.661 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.067 4.067 3 C 0.010 3.990 4 N -0.220 5.220 5 C -0.047 4.047 6 C -0.137 4.137 7 C -0.138 4.138 8 C 0.388 3.612 9 O -0.382 6.382 10 O -0.258 6.258 11 C 0.163 3.837 12 H 0.069 0.931 13 C -0.214 4.214 14 C -0.561 4.561 15 H 0.087 0.913 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.741 3.259 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.199 1.199 22 O -0.056 6.056 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.036 0.964 32 H 0.120 0.880 33 H 0.057 0.943 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.327 -11.583 11.189 16.445 hybrid contribution -0.275 0.381 -1.585 1.653 sum -3.602 -11.202 9.604 15.188 Atomic orbital electron populations 1.21797 0.92761 1.03102 1.03300 1.20168 0.97119 0.83859 1.05527 1.26575 0.96889 0.96696 0.78862 1.70311 1.18197 1.03510 1.29945 1.22055 0.97597 0.94143 0.90877 1.20403 1.03015 0.93032 0.97285 1.22127 1.12096 0.85804 0.93794 1.18929 0.75235 0.83818 0.83214 1.90854 1.44782 1.26873 1.75667 1.86680 1.76861 1.47014 1.15246 1.20796 0.92774 0.81193 0.88913 0.93147 1.22186 0.96536 1.03344 0.99291 1.20969 1.24123 1.10954 1.00078 0.91273 1.24876 0.95372 0.94743 0.98840 1.69881 1.33682 1.12751 1.36312 0.86297 0.79962 0.77669 0.82007 1.19947 1.20947 1.19896 1.84558 1.62488 1.21927 1.36623 0.91763 0.90708 0.91694 0.88380 0.87365 0.89902 0.90469 0.88511 0.96355 0.87957 0.94285 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.03 -0.25 6.56 -27.88 -0.18 -0.44 16 3 C 0.22 3.07 7.57 -12.79 -0.10 2.97 16 4 N -0.49 -7.62 11.25 -7.05 -0.08 -7.70 16 5 C 0.08 1.29 7.16 -82.45 -0.59 0.70 16 6 C -0.08 -1.12 9.87 36.01 0.36 -0.77 16 7 C -0.08 -1.63 7.25 -36.89 -0.27 -1.89 16 8 C 0.54 12.21 7.91 34.07 0.27 12.48 16 9 O -0.49 -11.38 14.06 -19.34 -0.27 -11.65 16 10 O -0.34 -8.58 9.88 -42.01 -0.41 -9.00 16 11 C 0.22 5.83 2.57 -27.88 -0.07 5.76 16 12 H 0.05 1.47 7.16 -51.93 -0.37 1.10 16 13 C -0.16 -3.96 9.33 37.16 0.35 -3.61 16 14 C -0.52 -14.80 8.90 -34.44 -0.31 -15.10 16 15 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 17 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 18 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 O -0.17 -3.02 10.79 4.37 0.05 -2.97 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 1.47 6.47 -51.93 -0.34 1.13 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 33 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 299.57 15.07 4.51 4.51 Total: -1.00 -31.18 299.57 -5.24 -36.42 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -4.37 Total: -2.17 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.27 Total: 0.94 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.55 Total: -32.12 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.64 Total: -23.62 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.18 -5.24 -36.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815948832.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.837 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds