Wall clock time and date at job start Mon Mar 30 2020 06:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.46966 * 2 1 4 4 N 1.30632 * 125.41572 * 89.99642 * 3 2 1 5 5 C 1.33649 * 109.00694 * 179.97438 * 4 3 2 6 6 C 1.50705 * 126.27861 * 180.02562 * 5 4 3 7 7 C 1.36440 * 107.44735 * 0.02562 * 5 4 3 8 8 C 1.46534 * 126.65368 * 179.97438 * 7 5 4 9 9 O 1.21605 * 120.00368 * 0.02562 * 8 7 5 10 10 O 1.34891 * 119.99462 * 180.02562 * 8 7 5 11 11 C 1.45206 * 116.99296 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47146 * 329.99248 * 11 10 8 13 13 C 1.52997 * 109.47226 * 90.00222 * 11 10 8 14 14 C 1.50706 * 109.46448 * 210.00014 * 11 10 8 15 15 H 1.07999 * 120.00196 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 11 19 19 H 1.48490 * 109.47405 * 60.00219 * 18 16 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47399 * 299.99813 * 18 16 14 22 22 O 1.33656 * 125.41214 * 270.31001 * 3 2 1 23 23 H 1.09001 * 109.47070 * 60.00787 * 1 2 3 24 24 H 1.08998 * 109.46922 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47144 * 300.00247 * 1 2 3 26 26 H 1.08999 * 109.47144 * 239.99753 * 2 1 3 27 27 H 1.09001 * 109.47070 * 119.99212 * 2 1 3 28 28 H 1.09002 * 109.46611 * 270.00090 * 6 5 4 29 29 H 1.09002 * 109.47249 * 29.99940 * 6 5 4 30 30 H 1.08998 * 109.47499 * 150.00138 * 6 5 4 31 31 H 1.09002 * 109.47153 * 299.99431 * 13 11 10 32 32 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 33 33 H 1.09004 * 109.47261 * 59.99603 * 13 11 10 34 34 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2846 2.1346 1.0646 5 6 2.7124 3.3432 0.6871 6 6 3.1126 4.4730 1.6006 7 6 2.7206 3.3665 -0.6771 8 6 3.1176 4.4897 -1.5304 9 8 3.4873 5.5337 -1.0284 10 8 3.0729 4.3653 -2.8729 11 6 3.4811 5.5183 -3.6555 12 1 3.2594 6.4304 -3.1015 13 6 4.9841 5.4414 -3.9310 14 6 2.7307 5.5294 -4.9624 15 1 2.0187 4.7479 -5.1828 16 6 2.9533 6.5373 -5.8765 17 7 3.8208 7.4886 -5.6082 18 14 2.0227 6.5514 -7.4961 19 1 0.5640 6.6258 -7.2282 20 1 2.4402 7.7304 -8.2966 21 1 2.3245 5.3089 -8.2514 22 8 2.2849 2.1530 -1.0893 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5137 0.8901 28 1 2.2403 5.0884 1.8209 29 1 3.5134 4.0654 2.5286 30 1 3.8734 5.0825 1.1130 31 1 5.5269 5.4334 -2.9858 32 1 5.2904 6.3067 -4.5189 33 1 5.2058 4.5292 -4.4850 34 1 3.9776 8.1974 -6.2515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815948832.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:14 Heat of formation + Delta-G solvation = -100.108764 kcal Electronic energy + Delta-G solvation = -18531.283996 eV Core-core repulsion = 15429.943799 eV Total energy + Delta-G solvation = -3101.340197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.67883 -41.25855 -37.89492 -36.49537 -35.38614 -35.23018 -32.13295 -31.59977 -29.14592 -27.50113 -26.15430 -24.26707 -22.70445 -22.47490 -21.65396 -19.53449 -18.67583 -18.28240 -17.80798 -16.97003 -16.68849 -16.49636 -15.80455 -15.14169 -14.86326 -14.47727 -14.33268 -14.22371 -14.00959 -13.65108 -13.34529 -13.27933 -13.07501 -12.85066 -12.64658 -12.44559 -12.29558 -12.19467 -12.16695 -12.01194 -11.70911 -11.64169 -11.08808 -10.64000 -10.10507 -8.32283 -6.49762 -0.53773 1.07373 1.11542 1.41049 1.44587 1.52963 1.63767 1.94700 2.38373 2.70945 2.98426 3.44183 3.66187 4.07185 4.15149 4.18339 4.33498 4.44646 4.54217 4.60806 4.72112 4.73226 4.75047 4.88020 4.94766 4.99695 5.01617 5.19090 5.31326 5.40573 5.53729 5.76881 5.95414 6.29078 6.50328 6.72242 7.20874 8.75400 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.005333 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.654602 B = 5248.991247 C = 6001.317637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.031 4.031 3 C 0.239 3.761 4 N -0.502 5.502 5 C 0.101 3.899 6 C -0.082 4.082 7 C -0.132 4.132 8 C 0.543 3.457 9 O -0.509 6.509 10 O -0.356 6.356 11 C 0.217 3.783 12 H 0.018 0.982 13 C -0.143 4.143 14 C -0.554 4.554 15 H 0.064 0.936 16 C 0.021 3.979 17 N -0.913 5.913 18 Si 0.984 3.016 19 H -0.269 1.269 20 H -0.273 1.273 21 H -0.265 1.265 22 O -0.189 6.189 23 H 0.048 0.952 24 H 0.106 0.894 25 H 0.058 0.942 26 H 0.118 0.882 27 H 0.136 0.864 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.027 0.973 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.314 -13.713 11.054 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 C 0.034 3.966 4 N -0.232 5.232 5 C -0.023 4.023 6 C -0.138 4.138 7 C -0.185 4.185 8 C 0.388 3.612 9 O -0.402 6.402 10 O -0.273 6.273 11 C 0.164 3.836 12 H 0.036 0.964 13 C -0.201 4.201 14 C -0.592 4.592 15 H 0.082 0.918 16 C -0.179 4.179 17 N -0.551 5.551 18 Si 0.807 3.193 19 H -0.194 1.194 20 H -0.198 1.198 21 H -0.189 1.189 22 O -0.076 6.076 23 H 0.068 0.932 24 H 0.125 0.875 25 H 0.077 0.923 26 H 0.137 0.863 27 H 0.154 0.846 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.192 -13.455 11.612 18.261 hybrid contribution -0.044 0.841 -1.551 1.764 sum -4.236 -12.615 10.062 16.683 Atomic orbital electron populations 1.21809 0.91676 1.04906 1.02251 1.20661 0.97777 0.80564 1.07881 1.27948 0.93160 0.97788 0.77682 1.70438 1.19486 1.03082 1.30149 1.22527 0.94681 0.94941 0.90181 1.20526 1.03231 0.92345 0.97720 1.21623 1.16677 0.86269 0.93938 1.19313 0.74684 0.84833 0.82373 1.90821 1.45786 1.27965 1.75588 1.86652 1.77602 1.46075 1.16931 1.20557 0.93615 0.80778 0.88607 0.96397 1.22012 0.95732 1.02800 0.99532 1.21219 1.25074 1.11756 1.01120 0.91774 1.25801 0.95977 0.93858 1.02308 1.69987 1.34385 1.13084 1.37600 0.85219 0.78564 0.78252 0.77290 1.19402 1.19820 1.18926 1.84544 1.63260 1.21756 1.38047 0.93249 0.87491 0.92325 0.86344 0.84614 0.88543 0.87616 0.89928 0.95378 0.89460 0.93716 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.89 71.98 0.71 -1.18 16 2 C -0.03 -0.45 6.56 29.85 0.20 -0.26 16 3 C 0.24 6.38 7.57 88.29 0.67 7.05 16 4 N -0.50 -14.71 11.25 -291.00 -3.28 -17.98 16 5 C 0.10 3.32 7.16 41.86 0.30 3.62 16 6 C -0.08 -2.20 9.87 71.24 0.70 -1.49 16 7 C -0.13 -5.17 7.25 24.01 0.17 -5.00 16 8 C 0.54 25.31 7.91 69.98 0.55 25.86 16 9 O -0.51 -24.68 14.06 19.49 0.27 -24.41 16 10 O -0.36 -18.61 9.88 -57.10 -0.56 -19.18 16 11 C 0.22 12.24 2.57 29.85 0.08 12.32 16 12 H 0.02 1.12 7.16 -2.39 -0.02 1.10 16 13 C -0.14 -7.48 9.33 71.98 0.67 -6.81 16 14 C -0.55 -32.12 8.90 25.60 0.23 -31.90 16 15 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 16 C 0.02 1.15 5.30 84.66 0.45 1.60 16 17 N -0.91 -52.15 11.32 21.45 0.24 -51.91 16 18 Si 0.98 42.96 29.54 68.60 2.03 44.99 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 22 O -0.19 -6.65 10.79 -7.20 -0.08 -6.73 16 23 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.08 2.51 6.47 -2.39 -0.02 2.49 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 4.82 6.07 -2.39 -0.01 4.80 16 33 H 0.04 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -68.93 299.57 4.46 -64.47 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.11 Total: 6.93 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 4.73 Total: 3.82 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -3.03 Total: -69.89 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -0.37 Total: -50.32 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -68.93 4.46 -64.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815948832.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.642 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds