Wall clock time and date at job start Mon Mar 30 2020 07:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47230 * 2 1 4 4 C 1.33388 * 125.20566 * 89.99371 * 3 2 1 5 5 C 1.38419 * 114.91958 * 179.97438 * 4 3 2 6 6 C 1.33381 * 114.92254 * 0.02562 * 5 4 3 7 7 C 1.50706 * 125.20227 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47510 * 89.99914 * 7 6 5 9 9 C 1.46895 * 111.00012 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47466 * 324.99667 * 9 8 7 11 11 C 1.53001 * 109.47206 * 84.99923 * 9 8 7 12 12 C 1.52999 * 109.46921 * 204.99947 * 9 8 7 13 13 C 1.50702 * 109.47522 * 65.00158 * 12 9 8 14 14 H 1.08002 * 119.99446 * 359.97438 * 13 12 9 15 15 C 1.37871 * 120.00072 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 179.72119 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46758 * 269.72576 * 17 15 13 19 19 H 1.48499 * 109.47026 * 29.72423 * 17 15 13 20 20 H 1.48496 * 109.47474 * 149.72459 * 17 15 13 21 21 S 1.75881 * 125.19913 * 270.24019 * 3 2 1 22 22 H 1.09002 * 109.47054 * 60.00639 * 1 2 3 23 23 H 1.09001 * 109.47281 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47366 * 300.00524 * 1 2 3 25 25 H 1.08996 * 109.47366 * 239.99476 * 2 1 3 26 26 H 1.09008 * 109.46534 * 119.99830 * 2 1 3 27 27 H 1.07998 * 122.53778 * 359.97438 * 4 3 2 28 28 H 1.07999 * 122.53508 * 180.02562 * 5 4 3 29 29 H 1.08995 * 109.46884 * 329.99377 * 7 6 5 30 30 H 1.09005 * 109.47089 * 209.99683 * 7 6 5 31 31 H 1.00898 * 110.99358 * 303.95401 * 8 7 6 32 32 H 1.08994 * 109.47308 * 59.99819 * 11 9 8 33 33 H 1.09003 * 109.46775 * 179.97438 * 11 9 8 34 34 H 1.09001 * 109.46990 * 299.99640 * 11 9 8 35 35 H 1.09000 * 109.47527 * 304.99756 * 12 9 8 36 36 H 1.09001 * 109.47054 * 184.99847 * 12 9 8 37 37 H 0.96999 * 120.00128 * 180.27192 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2886 2.1459 1.0899 5 6 2.7432 3.4297 0.8427 6 6 2.8556 3.7474 -0.4478 7 6 3.3260 5.0777 -0.9772 8 7 4.7846 5.0484 -1.1492 9 6 5.2798 6.3317 -1.6644 10 1 4.5470 6.7546 -2.3517 11 6 5.5026 7.2975 -0.4989 12 6 6.6017 6.1092 -2.4021 13 6 6.3594 5.2569 -3.6211 14 1 5.3624 4.9085 -3.8469 15 6 7.4107 4.9212 -4.4475 16 7 7.2002 4.1729 -5.5084 17 14 9.1353 5.5232 -4.0566 18 1 9.3647 6.8322 -4.7193 19 1 9.2839 5.6794 -2.5873 20 1 10.1283 4.5367 -4.5524 21 16 2.3646 2.3786 -1.4372 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 2.1518 1.7604 2.0894 28 1 2.9882 4.1217 1.6349 29 1 3.0590 5.8645 -0.2717 30 1 2.8508 5.2750 -1.9382 31 1 5.2455 4.8036 -0.2857 32 1 6.2354 6.8748 0.1884 33 1 5.8705 8.2497 -0.8812 34 1 4.5608 7.4561 0.0266 35 1 7.3065 5.6053 -1.7407 36 1 7.0138 7.0710 -2.7073 37 1 7.9405 3.9334 -6.0876 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829171408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:17 Heat of formation + Delta-G solvation = -4.892413 kcal Electronic energy + Delta-G solvation = -16077.506163 eV Core-core repulsion = 13558.880823 eV Total energy + Delta-G solvation = -2518.625341 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.28909 -38.11468 -35.22340 -34.45341 -32.62392 -29.87714 -28.92826 -26.38436 -24.68318 -23.76983 -22.96648 -21.44054 -19.59899 -18.77066 -17.96051 -16.59557 -16.35303 -16.13647 -15.62839 -15.13015 -14.91232 -14.66615 -14.35158 -14.05956 -13.70360 -13.64042 -13.46046 -13.29220 -12.95769 -12.67138 -12.54610 -12.37456 -12.17395 -12.10682 -11.86400 -11.61645 -11.45075 -11.40301 -11.15045 -10.66808 -9.42064 -9.36331 -8.99835 -8.16332 -6.15330 0.11723 0.76346 1.22651 1.37363 1.40206 1.51302 1.87209 2.43429 3.17383 3.49227 3.85759 3.97671 4.16930 4.21869 4.29748 4.42838 4.44915 4.53798 4.58397 4.60439 4.81222 4.90371 4.95738 5.01776 5.05843 5.15257 5.20674 5.27475 5.32973 5.35744 5.40602 5.52335 5.71336 5.77331 6.29477 6.49297 6.70239 6.92737 7.45188 9.01539 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.005043 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.296025 B = 5551.421612 C = 6291.693060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C -0.179 4.179 4 C -0.144 4.144 5 C -0.131 4.131 6 C -0.180 4.180 7 C 0.137 3.863 8 N -0.682 5.682 9 C 0.101 3.899 10 H 0.055 0.945 11 C -0.170 4.170 12 C -0.002 4.002 13 C -0.490 4.490 14 H 0.029 0.971 15 C -0.007 4.007 16 N -0.961 5.961 17 Si 0.949 3.051 18 H -0.268 1.268 19 H -0.248 1.248 20 H -0.291 1.291 21 S 0.060 5.940 22 H 0.044 0.956 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.162 0.838 28 H 0.156 0.844 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.341 0.659 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.016 0.984 36 H 0.021 0.979 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.389 -2.657 17.069 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 C -0.297 4.297 4 C -0.173 4.173 5 C -0.162 4.162 6 C -0.298 4.298 7 C 0.006 3.994 8 N -0.313 5.313 9 C -0.008 4.008 10 H 0.074 0.926 11 C -0.229 4.229 12 C -0.040 4.040 13 C -0.529 4.529 14 H 0.047 0.953 15 C -0.201 4.201 16 N -0.604 5.604 17 Si 0.773 3.227 18 H -0.194 1.194 19 H -0.171 1.171 20 H -0.217 1.217 21 S 0.325 5.675 22 H 0.063 0.937 23 H 0.096 0.904 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.180 0.820 28 H 0.174 0.826 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.039 0.961 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.439 -3.265 14.739 18.941 hybrid contribution 0.870 0.833 1.466 1.897 sum -10.569 -2.432 16.204 19.499 Atomic orbital electron populations 1.21757 0.93436 1.02804 1.02026 1.20195 0.96860 0.88479 1.03779 1.24888 1.08115 1.01683 0.94979 1.20267 1.03313 0.93794 0.99966 1.20315 1.02685 0.97901 0.95348 1.24398 1.09028 0.99709 0.96625 1.20265 0.88846 0.90874 0.99365 1.60353 1.03324 1.32823 1.34826 1.21370 0.96677 0.87524 0.95248 0.92638 1.22427 1.02003 1.00111 0.98335 1.19574 0.94624 0.95384 0.94415 1.21317 0.94604 1.29693 1.07273 0.95254 1.25999 1.03645 0.95582 0.94884 1.70101 1.33064 1.40348 1.16868 0.85686 0.79081 0.78070 0.79852 1.19361 1.17146 1.21709 1.84825 1.64159 1.07079 1.11423 0.93683 0.90430 0.91922 0.91346 0.88296 0.82024 0.82614 0.91688 0.92461 0.84063 0.92094 0.91643 0.91615 0.96551 0.96068 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.89 71.98 0.71 -1.53 16 2 C -0.05 -1.01 6.43 29.85 0.19 -0.82 16 3 C -0.18 -4.44 5.76 24.59 0.14 -4.29 16 4 C -0.14 -3.24 10.05 21.21 0.21 -3.03 16 5 C -0.13 -3.24 10.05 21.21 0.21 -3.03 16 6 C -0.18 -5.45 6.02 24.59 0.15 -5.30 16 7 C 0.14 4.34 5.97 85.56 0.51 4.86 16 8 N -0.68 -25.38 5.95 -495.58 -2.95 -28.34 16 9 C 0.10 3.86 2.53 44.92 0.11 3.97 16 10 H 0.06 2.25 7.80 -2.39 -0.02 2.23 16 11 C -0.17 -4.75 9.16 71.98 0.66 -4.09 16 12 C 0.00 -0.10 3.72 29.85 0.11 0.01 16 13 C -0.49 -29.12 9.39 25.60 0.24 -28.88 16 14 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 15 C -0.01 -0.41 5.47 84.65 0.46 0.06 16 16 N -0.96 -63.06 13.96 21.45 0.30 -62.76 16 17 Si 0.95 45.98 27.47 68.60 1.88 47.86 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 20 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 21 S 0.06 1.93 23.31 -56.49 -1.32 0.61 16 22 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 29 H 0.07 1.70 7.43 -2.39 -0.02 1.68 16 30 H 0.06 2.04 8.06 -2.38 -0.02 2.02 16 31 H 0.34 11.48 8.46 -89.70 -0.76 10.72 16 32 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.54 7.45 -2.39 -0.02 1.52 16 35 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 36 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 37 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -70.64 319.27 1.86 -68.79 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.22 Total: 15.91 kcal Atomic # 6 Polarization: -45.80 SS G_CDS: 3.72 Total: -42.08 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -2.65 Total: -91.10 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.86 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.32 Total: 0.61 kcal Total: -70.64 1.86 -68.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829171408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.894 kcal (2) G-P(sol) polarization free energy of solvation -70.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds