Wall clock time and date at job start Mon Mar 30 2020 07:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38427 * 122.54212 * 2 1 4 4 C 1.33387 * 114.92248 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.20302 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.47140 * 90.00119 * 5 4 3 7 7 C 1.46898 * 110.99888 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47149 * 35.00177 * 7 6 5 9 9 C 1.52995 * 109.47098 * 274.99671 * 7 6 5 10 10 C 1.52998 * 109.46733 * 155.00124 * 7 6 5 11 11 C 1.50700 * 109.47217 * 294.99711 * 10 7 6 12 12 H 1.08005 * 120.00208 * 0.02562 * 11 10 7 13 13 C 1.37872 * 120.00220 * 180.02562 * 11 10 7 14 14 N 1.31519 * 120.00303 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00145 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47214 * 59.99653 * 15 13 11 17 17 H 1.48504 * 109.46953 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46915 * 299.99592 * 15 13 11 19 19 S 1.75885 * 109.59264 * 0.24163 * 4 3 2 20 20 C 1.33389 * 122.53826 * 179.97438 * 2 1 3 21 21 C 1.50702 * 125.20581 * 359.97438 * 20 2 1 22 22 H 1.08999 * 109.47310 * 90.02213 * 1 2 3 23 23 H 1.08998 * 109.46786 * 210.02258 * 1 2 3 24 24 H 1.09004 * 109.46456 * 330.02150 * 1 2 3 25 25 H 1.08002 * 122.53685 * 359.96307 * 3 2 1 26 26 H 1.09000 * 109.47247 * 330.00141 * 5 4 3 27 27 H 1.09001 * 109.47358 * 209.99567 * 5 4 3 28 28 H 1.00902 * 110.99923 * 303.95945 * 6 5 4 29 29 H 1.09000 * 109.47371 * 60.00269 * 9 7 6 30 30 H 1.09002 * 109.47594 * 180.02562 * 9 7 6 31 31 H 1.09002 * 109.47229 * 300.00584 * 9 7 6 32 32 H 1.08997 * 109.47741 * 54.99549 * 10 7 6 33 33 H 1.09007 * 109.47097 * 175.00377 * 10 7 6 34 34 H 0.96998 * 120.00557 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.47388 * 89.99401 * 21 20 2 36 36 H 1.09001 * 109.47366 * 210.00292 * 21 20 2 37 37 H 1.09001 * 109.46652 * 329.99768 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9901 0.0005 5 6 4.5981 2.0954 0.0001 6 7 4.9305 2.4555 1.3850 7 6 5.9282 3.5330 1.4237 8 1 5.7579 4.2159 0.5916 9 6 7.3313 2.9331 1.3124 10 6 5.8033 4.2963 2.7438 11 6 4.4661 4.9890 2.7989 12 1 3.7743 4.8940 1.9750 13 6 4.1258 5.7442 3.9011 14 7 4.9679 5.8596 4.9047 15 14 2.4679 6.6023 3.9697 16 1 1.3834 5.5920 3.8783 17 1 2.3467 7.3433 5.2510 18 1 2.3554 7.5533 2.8348 19 16 3.9386 -0.7305 -0.0059 20 6 2.2245 -1.1245 0.0005 21 6 1.6537 -2.5193 0.0017 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3632 0.8902 0.5135 25 1 1.7966 2.1464 -0.0006 26 1 4.1925 2.9665 -0.5144 27 1 5.4980 1.7566 -0.5131 28 1 4.1020 2.7114 1.9009 29 1 7.4203 2.3892 0.3720 30 1 8.0717 3.7326 1.3416 31 1 7.5015 2.2501 2.1446 32 1 5.8852 3.5980 3.5766 33 1 6.5995 5.0377 2.8115 34 1 4.7284 6.3906 5.6803 35 1 1.5156 -2.8562 -1.0257 36 1 2.3399 -3.1923 0.5158 37 1 0.6926 -2.5180 0.5159 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829173209.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:56 Heat of formation + Delta-G solvation = 5.321398 kcal Electronic energy + Delta-G solvation = -16221.570589 eV Core-core repulsion = 13703.388152 eV Total energy + Delta-G solvation = -2518.182437 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -38.48618 -36.63070 -33.38516 -32.24407 -30.29754 -29.17352 -27.39681 -26.06066 -23.86647 -22.85864 -21.03204 -19.44002 -18.09086 -16.96608 -16.34786 -15.10397 -14.85343 -14.56311 -14.37846 -14.09413 -13.57858 -13.06242 -12.90677 -12.79418 -12.42448 -12.12612 -11.86507 -11.72194 -11.59388 -11.40097 -11.26335 -11.18785 -10.89354 -10.67666 -10.52064 -10.47154 -10.19654 -9.27263 -9.08941 -8.40695 -8.26451 -8.09533 -7.66952 -6.02792 -4.06148 1.16946 1.82018 2.22782 2.85526 3.30575 3.35655 3.37275 4.42827 4.84010 4.91648 5.14646 5.19803 5.34739 5.38862 5.41818 5.47828 5.61579 5.67333 5.74656 5.85117 5.89816 5.96526 6.05504 6.20263 6.29295 6.39621 6.51594 6.55474 6.74544 6.92119 6.93547 7.49647 7.62503 7.95829 8.02593 8.24572 8.36333 8.99440 9.57993 11.08067 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.005660 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.257672 B = 4945.939184 C = 5979.731770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.104 4.104 3 C -0.137 4.137 4 C -0.151 4.151 5 C 0.126 3.874 6 N -0.677 5.677 7 C 0.087 3.913 8 H 0.030 0.970 9 C -0.136 4.136 10 C 0.021 3.979 11 C -0.525 4.525 12 H 0.051 0.949 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.889 3.111 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.278 1.278 19 S 0.104 5.896 20 C -0.200 4.200 21 C -0.077 4.077 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.136 0.864 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.358 0.642 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.026 0.974 33 H 0.022 0.978 34 H 0.262 0.738 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.439 -13.407 -11.059 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.168 4.168 4 C -0.269 4.269 5 C -0.005 4.005 6 N -0.312 5.312 7 C -0.022 4.022 8 H 0.048 0.952 9 C -0.194 4.194 10 C -0.016 4.016 11 C -0.563 4.563 12 H 0.069 0.931 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.717 3.283 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.204 1.204 19 S 0.370 5.630 20 C -0.317 4.317 21 C -0.136 4.136 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.154 0.846 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.179 0.821 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.572 -14.664 -10.804 18.562 hybrid contribution -2.690 2.224 -0.086 3.492 sum -6.262 -12.440 -10.890 17.679 Atomic orbital electron populations 1.20502 0.90286 1.02567 1.01800 1.18722 0.97030 0.91705 1.04133 1.19975 0.92495 0.99275 1.05061 1.24413 0.97621 0.97137 1.07693 1.20409 0.94623 0.92643 0.92848 1.60648 1.17195 1.43442 1.09906 1.21645 0.90240 0.90046 1.00294 0.95167 1.21802 0.96967 1.00194 1.00400 1.19275 0.96915 0.94600 0.90840 1.21120 1.01747 1.30575 1.02873 0.93124 1.24975 0.96882 0.96477 0.95662 1.69948 1.35539 1.40289 1.07166 0.86707 0.84561 0.79781 0.77256 1.20201 1.21237 1.20352 1.84101 1.04955 1.00563 1.73415 1.24212 0.96290 0.99015 1.12200 1.20269 1.00723 0.90411 1.02152 0.91601 0.91751 0.91552 0.84596 0.93864 0.90881 0.82088 0.94559 0.93199 0.92574 0.95539 0.95948 0.92877 0.91253 0.91638 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.87 36.01 0.36 -0.62 16 2 C -0.10 -1.39 5.80 -106.25 -0.62 -2.01 16 3 C -0.14 -2.07 9.85 -41.21 -0.41 -2.47 16 4 C -0.15 -2.37 6.02 -36.00 -0.22 -2.59 16 5 C 0.13 2.09 5.97 -4.97 -0.03 2.06 16 6 N -0.68 -13.35 6.30 -107.99 -0.68 -14.04 16 7 C 0.09 1.82 2.59 -67.72 -0.18 1.64 16 8 H 0.03 0.64 7.80 -51.93 -0.40 0.24 16 9 C -0.14 -2.46 9.41 37.15 0.35 -2.12 16 10 C 0.02 0.54 4.57 -27.88 -0.13 0.41 16 11 C -0.52 -14.43 8.12 -34.44 -0.28 -14.71 16 12 H 0.05 1.35 7.49 -52.48 -0.39 0.96 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 15 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 S 0.10 1.46 23.31 -107.50 -2.51 -1.05 16 20 C -0.20 -2.58 6.50 -36.00 -0.23 -2.81 16 21 C -0.08 -0.73 10.05 36.01 0.36 -0.37 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.59 6.60 -51.93 -0.34 0.25 16 24 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 25 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 26 H 0.04 0.72 8.05 -51.93 -0.42 0.30 16 27 H 0.07 1.15 7.44 -51.93 -0.39 0.76 16 28 H 0.36 7.75 7.20 -39.29 -0.28 7.47 16 29 H 0.04 0.58 7.45 -51.93 -0.39 0.20 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.62 6.64 -51.93 -0.34 0.28 16 LS Contribution 318.14 15.07 4.79 4.79 Total: -1.00 -29.37 318.14 -9.69 -39.06 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.90 Total: 2.52 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -1.12 Total: -21.93 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.06 Total: -39.84 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.51 Total: -1.05 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.37 -9.69 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829173209.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.383 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds