Wall clock time and date at job start Mon Mar 30 2020 07:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38427 * 122.54212 * 2 1 4 4 C 1.33387 * 114.92248 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.20302 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.47140 * 90.00119 * 5 4 3 7 7 C 1.46898 * 110.99888 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47149 * 35.00177 * 7 6 5 9 9 C 1.52995 * 109.47098 * 274.99671 * 7 6 5 10 10 C 1.52998 * 109.46733 * 155.00124 * 7 6 5 11 11 C 1.50700 * 109.47217 * 294.99711 * 10 7 6 12 12 H 1.08005 * 120.00208 * 0.02562 * 11 10 7 13 13 C 1.37872 * 120.00220 * 180.02562 * 11 10 7 14 14 N 1.31519 * 120.00303 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00145 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47214 * 59.99653 * 15 13 11 17 17 H 1.48504 * 109.46953 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46915 * 299.99592 * 15 13 11 19 19 S 1.75885 * 109.59264 * 0.24163 * 4 3 2 20 20 C 1.33389 * 122.53826 * 179.97438 * 2 1 3 21 21 C 1.50702 * 125.20581 * 359.97438 * 20 2 1 22 22 H 1.08999 * 109.47310 * 90.02213 * 1 2 3 23 23 H 1.08998 * 109.46786 * 210.02258 * 1 2 3 24 24 H 1.09004 * 109.46456 * 330.02150 * 1 2 3 25 25 H 1.08002 * 122.53685 * 359.96307 * 3 2 1 26 26 H 1.09000 * 109.47247 * 330.00141 * 5 4 3 27 27 H 1.09001 * 109.47358 * 209.99567 * 5 4 3 28 28 H 1.00902 * 110.99923 * 303.95945 * 6 5 4 29 29 H 1.09000 * 109.47371 * 60.00269 * 9 7 6 30 30 H 1.09002 * 109.47594 * 180.02562 * 9 7 6 31 31 H 1.09002 * 109.47229 * 300.00584 * 9 7 6 32 32 H 1.08997 * 109.47741 * 54.99549 * 10 7 6 33 33 H 1.09007 * 109.47097 * 175.00377 * 10 7 6 34 34 H 0.96998 * 120.00557 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.47388 * 89.99401 * 21 20 2 36 36 H 1.09001 * 109.47366 * 210.00292 * 21 20 2 37 37 H 1.09001 * 109.46652 * 329.99768 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9901 0.0005 5 6 4.5981 2.0954 0.0001 6 7 4.9305 2.4555 1.3850 7 6 5.9282 3.5330 1.4237 8 1 5.7579 4.2159 0.5916 9 6 7.3313 2.9331 1.3124 10 6 5.8033 4.2963 2.7438 11 6 4.4661 4.9890 2.7989 12 1 3.7743 4.8940 1.9750 13 6 4.1258 5.7442 3.9011 14 7 4.9679 5.8596 4.9047 15 14 2.4679 6.6023 3.9697 16 1 1.3834 5.5920 3.8783 17 1 2.3467 7.3433 5.2510 18 1 2.3554 7.5533 2.8348 19 16 3.9386 -0.7305 -0.0059 20 6 2.2245 -1.1245 0.0005 21 6 1.6537 -2.5193 0.0017 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3632 0.8902 0.5135 25 1 1.7966 2.1464 -0.0006 26 1 4.1925 2.9665 -0.5144 27 1 5.4980 1.7566 -0.5131 28 1 4.1020 2.7114 1.9009 29 1 7.4203 2.3892 0.3720 30 1 8.0717 3.7326 1.3416 31 1 7.5015 2.2501 2.1446 32 1 5.8852 3.5980 3.5766 33 1 6.5995 5.0377 2.8115 34 1 4.7284 6.3906 5.6803 35 1 1.5156 -2.8562 -1.0257 36 1 2.3399 -3.1923 0.5158 37 1 0.6926 -2.5180 0.5159 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829173209.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:55 Heat of formation + Delta-G solvation = -11.236612 kcal Electronic energy + Delta-G solvation = -16222.288598 eV Core-core repulsion = 13703.388152 eV Total energy + Delta-G solvation = -2518.900446 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.58163 -38.20332 -35.10987 -33.85348 -31.56692 -30.17355 -29.29916 -27.28536 -25.24470 -24.56826 -22.19927 -21.16551 -19.12790 -18.51505 -18.09623 -16.74169 -16.41790 -16.04135 -15.73076 -15.16269 -14.83543 -14.41730 -14.04325 -13.77771 -13.62969 -13.55000 -13.37762 -13.24560 -13.02121 -12.73381 -12.60764 -12.55384 -12.37988 -12.35137 -12.20895 -11.94641 -11.54444 -11.27385 -11.03698 -10.58095 -9.43610 -9.19745 -9.12997 -8.20053 -6.30794 0.07958 0.75076 1.14582 1.38570 1.40667 1.48308 1.77159 2.39314 3.11638 3.48421 3.87901 4.02735 4.19047 4.32647 4.36991 4.48458 4.60491 4.63729 4.66763 4.69904 4.73339 4.79188 4.89619 4.98505 5.08821 5.17099 5.18836 5.28972 5.32273 5.46666 5.51129 5.55508 5.73168 5.82492 6.18878 6.33801 6.54492 6.83738 7.37923 8.91412 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.005660 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.257672 B = 4945.939184 C = 5979.731770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.122 4.122 3 C -0.141 4.141 4 C -0.179 4.179 5 C 0.131 3.869 6 N -0.680 5.680 7 C 0.095 3.905 8 H 0.029 0.971 9 C -0.128 4.128 10 C 0.028 3.972 11 C -0.535 4.535 12 H 0.056 0.944 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.959 3.041 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.269 1.269 19 S 0.099 5.901 20 C -0.192 4.192 21 C -0.079 4.079 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.134 0.866 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.344 0.656 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.048 0.952 32 H -0.004 1.004 33 H -0.002 1.002 34 H 0.263 0.737 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.097 -14.576 -12.280 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C -0.172 4.172 4 C -0.296 4.296 5 C 0.001 3.999 6 N -0.313 5.313 7 C -0.014 4.014 8 H 0.047 0.953 9 C -0.186 4.186 10 C -0.009 4.009 11 C -0.573 4.573 12 H 0.075 0.925 13 C -0.192 4.192 14 N -0.570 5.570 15 Si 0.784 3.216 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.194 1.194 19 S 0.365 5.635 20 C -0.309 4.309 21 C -0.137 4.137 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.081 0.919 25 H 0.151 0.849 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.163 0.837 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.014 0.986 33 H 0.016 0.984 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.221 -15.846 -12.051 20.581 hybrid contribution -2.174 2.526 0.277 3.344 sum -7.395 -13.320 -11.774 19.254 Atomic orbital electron populations 1.20551 0.88165 1.03230 1.02924 1.19015 0.98640 0.91173 1.04575 1.20195 0.92623 1.00027 1.04382 1.24334 0.97673 0.97777 1.09861 1.20366 0.95550 0.93138 0.90850 1.60678 1.16334 1.42385 1.11935 1.21464 0.92367 0.90321 0.97294 0.95282 1.21718 0.95124 1.00340 1.01416 1.19128 0.95587 0.93722 0.92492 1.21472 1.02458 1.30384 1.03022 0.92537 1.25876 1.00780 0.97312 0.95281 1.70085 1.37696 1.41316 1.07880 0.85596 0.79849 0.78750 0.77430 1.19227 1.20978 1.19387 1.84040 1.06529 0.99418 1.73521 1.24695 0.95277 1.00595 1.10366 1.20426 1.01364 0.88289 1.03617 0.90188 0.90125 0.91876 0.84854 0.93975 0.89837 0.83686 0.92026 0.92566 0.93314 0.98567 0.98411 0.92812 0.89483 0.90982 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.87 71.24 0.70 -0.96 16 2 C -0.12 -3.07 5.80 -20.92 -0.12 -3.19 16 3 C -0.14 -4.14 9.85 21.22 0.21 -3.93 16 4 C -0.18 -5.51 6.02 24.59 0.15 -5.36 16 5 C 0.13 4.30 5.97 85.56 0.51 4.81 16 6 N -0.68 -26.93 6.30 -495.59 -3.12 -30.05 16 7 C 0.10 4.00 2.59 44.91 0.12 4.12 16 8 H 0.03 1.23 7.80 -2.39 -0.02 1.21 16 9 C -0.13 -4.58 9.41 71.98 0.68 -3.90 16 10 C 0.03 1.49 4.57 29.85 0.14 1.62 16 11 C -0.54 -29.88 8.12 25.60 0.21 -29.68 16 12 H 0.06 3.02 7.49 -2.91 -0.02 3.00 16 13 C 0.01 0.33 5.46 84.65 0.46 0.80 16 14 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 15 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 S 0.10 2.67 23.31 -56.49 -1.32 1.35 16 20 C -0.19 -4.53 6.50 24.59 0.16 -4.37 16 21 C -0.08 -1.24 10.05 71.24 0.72 -0.53 16 22 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.08 1.22 6.60 -2.39 -0.02 1.20 16 24 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 25 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 26 H 0.04 1.38 8.05 -2.39 -0.02 1.36 16 27 H 0.08 2.52 7.44 -2.39 -0.02 2.51 16 28 H 0.34 15.14 7.20 -89.69 -0.65 14.50 16 29 H 0.06 1.88 7.45 -2.39 -0.02 1.86 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 34 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.17 6.64 -2.39 -0.02 1.16 16 Total: -1.00 -63.31 318.14 2.20 -61.12 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.40 Total: 18.27 kcal Atomic # 6 Polarization: -44.49 SS G_CDS: 3.93 Total: -40.57 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -2.84 Total: -86.33 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.32 Total: 1.35 kcal Total: -63.31 2.20 -61.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829173209.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.880 kcal (2) G-P(sol) polarization free energy of solvation -63.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds