Wall clock time and date at job start Mon Mar 30 2020 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00416 * 2 1 3 5 5 C 1.50704 * 109.47341 * 185.00219 * 4 2 1 6 6 H 1.08005 * 119.99728 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99972 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00363 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99722 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47506 * 90.00420 * 9 7 5 11 11 H 1.48503 * 109.46790 * 210.00423 * 9 7 5 12 12 H 1.48504 * 109.47269 * 330.00087 * 9 7 5 13 13 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 14 14 C 1.46901 * 110.99870 * 85.00132 * 13 2 1 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 2 16 16 C 1.38243 * 119.98294 * 269.72417 * 15 14 13 17 17 C 1.38223 * 120.01216 * 179.72848 * 16 15 14 18 18 C 1.38351 * 119.98350 * 0.54457 * 17 16 15 19 19 Cl 1.73600 * 120.01307 * 179.70647 * 18 17 16 20 20 C 1.38351 * 119.97628 * 359.72751 * 18 17 16 21 21 C 1.38213 * 119.98587 * 0.02562 * 20 18 17 22 22 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 23 23 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 24 24 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47142 * 304.99743 * 4 2 1 26 26 H 1.08991 * 109.47453 * 64.99824 * 4 2 1 27 27 H 0.96996 * 120.00111 * 180.02562 * 8 7 5 28 28 H 1.00901 * 110.99869 * 321.04843 * 13 2 1 29 29 H 1.09004 * 109.47031 * 299.99620 * 14 13 2 30 30 H 1.08995 * 109.47111 * 59.99900 * 14 13 2 31 31 H 1.08003 * 119.99784 * 359.97438 * 16 15 14 32 32 H 1.07997 * 120.00463 * 180.27183 * 17 16 15 33 33 H 1.08002 * 120.01161 * 179.97438 * 20 18 17 34 34 H 1.08003 * 119.99732 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5420 -0.6150 1.3127 6 1 4.0791 -0.0861 0.5392 7 6 4.2303 -1.1927 2.3582 8 7 3.5764 -1.8371 3.2999 9 14 6.0921 -1.0615 2.4366 10 1 6.4710 0.1612 3.1893 11 1 6.6441 -2.2567 3.1237 12 1 6.6414 -0.9848 1.0590 13 7 2.0197 -0.6925 -1.1995 14 6 2.0825 0.2226 -2.3469 15 6 2.5874 -0.5218 -3.5560 16 6 3.9432 -0.5694 -3.8216 17 6 4.4074 -1.2568 -4.9274 18 6 3.5138 -1.8876 -5.7746 19 17 4.0954 -2.7446 -7.1678 20 6 2.1566 -1.8347 -5.5114 21 6 1.6941 -1.1515 -4.4026 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -0.2618 2.1370 26 1 1.7517 -1.7715 1.2055 27 1 4.0607 -2.2433 4.0356 28 1 1.4495 -1.4979 -1.4101 29 1 1.0871 0.6163 -2.5526 30 1 2.7589 1.0462 -2.1182 31 1 4.6403 -0.0729 -3.1628 32 1 5.4669 -1.2976 -5.1323 33 1 1.4586 -2.3266 -6.1727 34 1 0.6346 -1.1098 -4.1972 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829173266.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:55 Heat of formation + Delta-G solvation = 2.678251 kcal Electronic energy + Delta-G solvation = -15859.365132 eV Core-core repulsion = 13203.191279 eV Total energy + Delta-G solvation = -2656.173853 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.41421 -36.91985 -36.27651 -33.04163 -31.81796 -31.05414 -29.06349 -27.24768 -24.74950 -22.93387 -22.79250 -21.09481 -19.74233 -17.11971 -16.22768 -15.62095 -15.36357 -14.87818 -14.45772 -14.07104 -13.58734 -13.44584 -13.40809 -12.89647 -12.48915 -11.93789 -11.84399 -11.65483 -11.42755 -11.37415 -11.23532 -10.89170 -10.82022 -10.55639 -10.43192 -10.06111 -9.29959 -9.02754 -8.97957 -8.59012 -8.23973 -7.59934 -5.86538 -3.84125 1.14356 1.31297 2.08339 3.39631 3.46058 3.50286 3.62552 4.57729 4.73329 4.82253 4.86915 5.08996 5.30251 5.35883 5.51156 5.63697 5.67007 5.71210 5.86802 5.94402 5.99222 6.03903 6.20162 6.25883 6.40200 6.59695 6.66174 6.82126 7.00574 7.53055 7.68091 7.99698 8.05098 8.16283 8.60885 9.20836 9.77139 11.25674 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.020843 B = 0.005001 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.060683 B = 5597.033004 C = 6603.762058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.065 0.935 4 C 0.033 3.967 5 C -0.488 4.488 6 H 0.058 0.942 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.657 5.657 14 C 0.094 3.906 15 C -0.064 4.064 16 C -0.082 4.082 17 C -0.112 4.112 18 C -0.040 4.040 19 Cl -0.082 7.082 20 C -0.113 4.113 21 C -0.105 4.105 22 H 0.057 0.943 23 H 0.037 0.963 24 H 0.051 0.949 25 H 0.018 0.982 26 H 0.017 0.983 27 H 0.257 0.743 28 H 0.332 0.668 29 H 0.030 0.970 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 2.105 -17.675 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.083 0.917 4 C -0.004 4.004 5 C -0.526 4.526 6 H 0.076 0.924 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.287 5.287 14 C -0.035 4.035 15 C -0.065 4.065 16 C -0.101 4.101 17 C -0.130 4.130 18 C -0.066 4.066 19 Cl -0.054 7.054 20 C -0.132 4.132 21 C -0.124 4.124 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.150 0.850 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.757 2.024 -17.463 17.794 hybrid contribution 0.144 -0.094 -0.202 0.265 sum -2.613 1.929 -17.665 17.961 Atomic orbital electron populations 1.22561 0.99485 1.01243 1.00656 1.21832 0.89919 0.98208 0.92098 0.91660 1.19113 0.96270 0.95413 0.89637 1.21134 0.91880 1.32871 1.06742 0.92400 1.24999 0.97951 0.95905 0.96076 1.69958 1.35197 1.37015 1.12366 0.86651 0.86494 0.77203 0.77945 1.21051 1.21550 1.19961 1.60615 1.57978 1.08296 1.01856 1.20959 0.98789 0.95221 0.88498 1.20069 0.93540 0.97252 0.95633 1.21109 0.95472 0.97838 0.95663 1.21069 0.99577 0.97806 0.94578 1.20889 0.94122 1.00237 0.91387 1.98352 1.89119 1.76265 1.41631 1.20949 0.93449 1.00388 0.98436 1.21011 0.99834 0.97434 0.94130 0.92394 0.94417 0.93001 0.96426 0.96497 0.93349 0.84997 0.95197 0.90244 0.84639 0.85132 0.85324 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 9.16 37.16 0.34 -2.56 16 2 C 0.09 1.72 2.53 -67.71 -0.17 1.55 16 3 H 0.07 1.29 7.80 -51.93 -0.40 0.88 16 4 C 0.03 0.83 4.65 -27.88 -0.13 0.70 16 5 C -0.49 -13.62 8.84 -34.44 -0.30 -13.93 16 6 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 9 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.66 -11.76 5.95 -107.99 -0.64 -12.41 16 14 C 0.09 1.37 5.61 -4.98 -0.03 1.34 16 15 C -0.06 -0.87 5.39 -104.62 -0.56 -1.43 16 16 C -0.08 -1.11 9.70 -39.59 -0.38 -1.50 16 17 C -0.11 -1.40 9.83 -39.55 -0.39 -1.79 16 18 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 19 Cl -0.08 -0.92 28.96 -51.86 -1.50 -2.42 16 20 C -0.11 -1.30 9.83 -39.55 -0.39 -1.69 16 21 C -0.11 -1.25 9.70 -39.59 -0.38 -1.63 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 24 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.33 5.66 8.46 -39.29 -0.33 5.33 16 29 H 0.03 0.39 7.38 -51.93 -0.38 0.01 16 30 H 0.08 1.18 8.00 -51.93 -0.42 0.76 16 31 H 0.14 1.82 8.06 -52.48 -0.42 1.39 16 32 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 306.02 15.07 4.61 4.61 Total: -1.00 -30.00 306.02 -9.41 -39.41 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.85 Total: 0.78 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -2.75 Total: -20.33 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.09 Total: -39.10 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.00 -9.41 -39.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829173266.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.091 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds