Wall clock time and date at job start Mon Mar 30 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00416 * 2 1 3 5 5 C 1.50704 * 109.47341 * 185.00219 * 4 2 1 6 6 H 1.08005 * 119.99728 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99972 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00363 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99722 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47506 * 90.00420 * 9 7 5 11 11 H 1.48503 * 109.46790 * 210.00423 * 9 7 5 12 12 H 1.48504 * 109.47269 * 330.00087 * 9 7 5 13 13 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 14 14 C 1.46901 * 110.99870 * 85.00132 * 13 2 1 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 2 16 16 C 1.38243 * 119.98294 * 269.72417 * 15 14 13 17 17 C 1.38223 * 120.01216 * 179.72848 * 16 15 14 18 18 C 1.38351 * 119.98350 * 0.54457 * 17 16 15 19 19 Cl 1.73600 * 120.01307 * 179.70647 * 18 17 16 20 20 C 1.38351 * 119.97628 * 359.72751 * 18 17 16 21 21 C 1.38213 * 119.98587 * 0.02562 * 20 18 17 22 22 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 23 23 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 24 24 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47142 * 304.99743 * 4 2 1 26 26 H 1.08991 * 109.47453 * 64.99824 * 4 2 1 27 27 H 0.96996 * 120.00111 * 180.02562 * 8 7 5 28 28 H 1.00901 * 110.99869 * 321.04843 * 13 2 1 29 29 H 1.09004 * 109.47031 * 299.99620 * 14 13 2 30 30 H 1.08995 * 109.47111 * 59.99900 * 14 13 2 31 31 H 1.08003 * 119.99784 * 359.97438 * 16 15 14 32 32 H 1.07997 * 120.00463 * 180.27183 * 17 16 15 33 33 H 1.08002 * 120.01161 * 179.97438 * 20 18 17 34 34 H 1.08003 * 119.99732 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5420 -0.6150 1.3127 6 1 4.0791 -0.0861 0.5392 7 6 4.2303 -1.1927 2.3582 8 7 3.5764 -1.8371 3.2999 9 14 6.0921 -1.0615 2.4366 10 1 6.4710 0.1612 3.1893 11 1 6.6441 -2.2567 3.1237 12 1 6.6414 -0.9848 1.0590 13 7 2.0197 -0.6925 -1.1995 14 6 2.0825 0.2226 -2.3469 15 6 2.5874 -0.5218 -3.5560 16 6 3.9432 -0.5694 -3.8216 17 6 4.4074 -1.2568 -4.9274 18 6 3.5138 -1.8876 -5.7746 19 17 4.0954 -2.7446 -7.1678 20 6 2.1566 -1.8347 -5.5114 21 6 1.6941 -1.1515 -4.4026 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -0.2618 2.1370 26 1 1.7517 -1.7715 1.2055 27 1 4.0607 -2.2433 4.0356 28 1 1.4495 -1.4979 -1.4101 29 1 1.0871 0.6163 -2.5526 30 1 2.7589 1.0462 -2.1182 31 1 4.6403 -0.0729 -3.1628 32 1 5.4669 -1.2976 -5.1323 33 1 1.4586 -2.3266 -6.1727 34 1 0.6346 -1.1098 -4.1972 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829173266.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:49 Heat of formation + Delta-G solvation = -14.322201 kcal Electronic energy + Delta-G solvation = -15860.102327 eV Core-core repulsion = 13203.191279 eV Total energy + Delta-G solvation = -2656.911048 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -40.39093 -38.22137 -37.33933 -34.91096 -33.31047 -31.98535 -30.43379 -29.02875 -25.97608 -24.82704 -23.76034 -22.13067 -21.36314 -18.38615 -18.04045 -16.75498 -16.58426 -16.24702 -16.21638 -15.36857 -14.74812 -14.47899 -14.40567 -14.36612 -13.93021 -13.53831 -13.31926 -13.17972 -12.91452 -12.60611 -12.41140 -12.34092 -12.26276 -12.08326 -11.83151 -11.73373 -11.12409 -11.06975 -10.46774 -9.96188 -9.57711 -8.96094 -8.07663 -6.12083 0.17138 0.37643 1.16549 1.42263 1.43639 1.54413 2.48907 2.64448 3.25764 3.58888 3.83811 3.94217 4.00233 4.26795 4.31084 4.41877 4.49904 4.60082 4.68991 4.71040 4.86493 4.99927 5.05745 5.26296 5.27604 5.28963 5.30449 5.53429 5.66499 5.70202 5.87182 5.92761 6.34815 6.50145 6.73463 7.02451 7.53561 9.04576 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.020843 B = 0.005001 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.060683 B = 5597.033004 C = 6603.762058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.099 3.901 3 H 0.062 0.938 4 C 0.037 3.963 5 C -0.496 4.496 6 H 0.058 0.942 7 C -0.007 4.007 8 N -0.942 5.942 9 Si 0.954 3.046 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.677 5.677 14 C 0.101 3.899 15 C -0.078 4.078 16 C -0.098 4.098 17 C -0.118 4.118 18 C -0.047 4.047 19 Cl -0.074 7.074 20 C -0.113 4.113 21 C -0.102 4.102 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.052 0.948 25 H -0.008 1.008 26 H -0.011 1.011 27 H 0.258 0.742 28 H 0.337 0.663 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.151 0.849 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.676 2.410 -19.451 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.010 4.010 3 H 0.080 0.920 4 C -0.001 4.001 5 C -0.535 4.535 6 H 0.076 0.924 7 C -0.203 4.203 8 N -0.585 5.585 9 Si 0.780 3.220 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.308 5.308 14 C -0.027 4.027 15 C -0.079 4.079 16 C -0.117 4.117 17 C -0.137 4.137 18 C -0.074 4.074 19 Cl -0.045 7.045 20 C -0.131 4.131 21 C -0.120 4.120 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.010 0.990 26 H 0.007 0.993 27 H 0.066 0.934 28 H 0.155 0.845 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.926 2.341 -19.260 19.621 hybrid contribution 0.189 -0.211 0.293 0.408 sum -2.736 2.130 -18.968 19.282 Atomic orbital electron populations 1.22414 0.96596 1.01774 1.02082 1.21474 0.92171 0.96941 0.90442 0.91976 1.19008 0.95091 0.94172 0.91820 1.21508 0.93456 1.32134 1.06399 0.92415 1.25854 1.02789 0.95757 0.95878 1.70092 1.37051 1.38208 1.13106 0.85605 0.80787 0.77331 0.78235 1.20087 1.21450 1.19131 1.60413 1.58482 1.09262 1.02619 1.20897 0.99855 0.94401 0.87536 1.20052 0.93795 0.98205 0.95811 1.21170 0.95728 0.98584 0.96238 1.21198 1.00359 0.97734 0.94412 1.21056 0.94578 1.00131 0.91585 1.98355 1.89105 1.76013 1.41072 1.21237 0.93537 0.99883 0.98492 1.21237 1.00696 0.96493 0.93607 0.92613 0.91289 0.92936 0.98998 0.99268 0.93367 0.84514 0.92943 0.91078 0.85371 0.84130 0.83132 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.17 9.16 71.98 0.66 -4.51 16 2 C 0.10 3.81 2.53 44.91 0.11 3.92 16 3 H 0.06 2.41 7.80 -2.39 -0.02 2.39 16 4 C 0.04 1.89 4.65 29.85 0.14 2.02 16 5 C -0.50 -28.11 8.84 25.60 0.23 -27.88 16 6 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 7 C -0.01 -0.42 5.46 84.65 0.46 0.05 16 8 N -0.94 -58.28 13.29 21.45 0.28 -58.00 16 9 Si 0.95 45.57 29.54 68.60 2.03 47.60 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 N -0.68 -23.59 5.95 -495.57 -2.95 -26.54 16 14 C 0.10 2.77 5.61 85.56 0.48 3.25 16 15 C -0.08 -1.98 5.39 -19.86 -0.11 -2.09 16 16 C -0.10 -2.59 9.70 22.27 0.22 -2.37 16 17 C -0.12 -2.82 9.83 22.29 0.22 -2.61 16 18 C -0.05 -1.05 6.32 22.32 0.14 -0.91 16 19 Cl -0.07 -1.52 28.96 -2.72 -0.08 -1.60 16 20 C -0.11 -2.30 9.83 22.29 0.22 -2.08 16 21 C -0.10 -2.15 9.70 22.26 0.22 -1.93 16 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.07 1.68 7.45 -2.39 -0.02 1.67 16 24 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 25 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 26 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.34 11.07 8.46 -89.69 -0.76 10.31 16 29 H 0.05 1.20 7.38 -2.39 -0.02 1.19 16 30 H 0.07 2.04 8.00 -2.39 -0.02 2.02 16 31 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -64.42 306.02 2.59 -61.83 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.32 Total: 11.85 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 2.98 Total: -35.14 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -2.67 Total: -84.54 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -64.42 2.59 -61.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829173266.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.507 kcal (2) G-P(sol) polarization free energy of solvation -64.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds