Wall clock time and date at job start Mon Mar 30 2020 06:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30255 * 125.61802 * 2 1 4 4 C 1.34482 * 108.69639 * 179.78055 * 3 2 1 5 5 C 1.50703 * 126.16335 * 180.27273 * 4 3 2 6 6 O 1.45200 * 109.46930 * 180.14307 * 5 4 3 7 7 C 1.34229 * 117.00167 * 179.97438 * 6 5 4 8 8 O 1.20826 * 119.99793 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00358 * 180.02562 * 7 6 5 10 10 C 1.53003 * 109.47381 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.46920 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46992 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99766 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00484 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99689 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00272 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47241 * 59.99928 * 16 14 12 18 18 H 1.48500 * 109.47043 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.46955 * 299.99931 * 16 14 12 20 20 C 1.34329 * 107.67064 * 0.39638 * 4 3 2 21 21 O 1.33970 * 125.61861 * 180.02562 * 2 1 3 22 22 H 1.08991 * 109.47205 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46697 * 299.99778 * 1 2 3 24 24 H 1.09007 * 109.47019 * 59.99625 * 1 2 3 25 25 H 1.09000 * 109.46643 * 300.14359 * 5 4 3 26 26 H 1.08999 * 109.46911 * 60.14962 * 5 4 3 27 27 H 1.08999 * 109.47011 * 300.00278 * 9 7 6 28 28 H 1.09003 * 109.47105 * 59.99827 * 9 7 6 29 29 H 1.08994 * 109.46872 * 300.00021 * 10 9 7 30 30 H 1.08998 * 109.46634 * 60.00008 * 10 9 7 31 31 H 1.09003 * 109.47158 * 299.99408 * 11 10 9 32 32 H 1.08998 * 109.47518 * 60.00479 * 11 10 9 33 33 H 0.96993 * 119.99855 * 180.02562 * 15 14 12 34 34 H 1.08002 * 126.44701 * 179.88214 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0589 0.0000 4 6 3.5522 0.6674 0.0049 5 6 4.7571 1.5726 0.0124 6 8 5.9663 0.7688 0.0126 7 6 7.1359 1.4274 0.0184 8 8 7.1489 2.6355 0.0236 9 6 8.4329 0.6600 0.0183 10 6 9.6064 1.6417 0.0249 11 6 10.9230 0.8625 0.0242 12 6 12.0790 1.8294 0.0313 13 1 11.8930 2.8932 0.0355 14 6 13.3739 1.3560 0.0326 15 7 13.6003 0.0604 0.0280 16 14 14.8066 2.5545 0.0421 17 1 14.7339 3.4033 1.2585 18 1 16.0846 1.7983 0.0426 19 1 14.7404 3.4148 -1.1664 20 6 3.5698 -0.6757 -0.0009 21 8 2.2873 -1.0891 -0.0005 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 4.7416 2.2055 -0.8749 26 1 4.7364 2.1977 0.9051 27 1 8.4816 0.0288 0.9057 28 1 8.4861 0.0366 -0.8742 29 1 9.5574 2.2724 -0.8627 30 1 9.5533 2.2653 0.9173 31 1 10.9723 0.2315 0.9117 32 1 10.9759 0.2391 -0.8683 33 1 14.5113 -0.2727 0.0293 34 1 4.4469 -1.3059 -0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848866914.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:08 Heat of formation + Delta-G solvation = -105.993706 kcal Electronic energy + Delta-G solvation = -17354.027804 eV Core-core repulsion = 14252.432417 eV Total energy + Delta-G solvation = -3101.595387 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.43507 -41.60250 -38.02679 -36.17776 -36.03156 -34.11632 -33.42471 -30.51799 -29.42233 -27.54642 -25.95628 -23.12072 -22.77974 -21.99947 -21.31183 -18.82905 -18.40477 -18.25693 -18.12043 -17.58848 -17.07647 -16.45943 -15.91011 -15.69010 -14.98332 -14.63490 -14.61555 -14.22504 -13.88767 -13.84028 -13.38144 -13.20497 -13.18364 -12.65588 -12.52947 -12.52484 -12.46145 -11.75958 -11.73471 -11.70472 -11.55646 -11.39080 -11.17623 -10.52856 -9.82328 -8.19405 -6.29057 0.39634 1.13382 1.34070 1.41501 1.43489 1.44636 1.51688 1.77131 2.42419 2.98059 3.14115 3.59295 3.72021 3.90265 4.10179 4.11966 4.21852 4.32624 4.52734 4.63750 4.66071 4.75418 4.84905 4.91343 4.92080 5.05370 5.15228 5.22595 5.31864 5.54370 5.74854 5.87466 6.27351 6.58255 6.67821 6.86532 7.39512 8.91853 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.078810 B = 0.002845 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.198620 B = 9838.576719 C =10157.419144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.195 3.805 3 N -0.511 5.511 4 C -0.048 4.048 5 C 0.156 3.844 6 O -0.351 6.351 7 C 0.476 3.524 8 O -0.536 6.536 9 C -0.102 4.102 10 C -0.088 4.088 11 C 0.025 3.975 12 C -0.548 4.548 13 H 0.053 0.947 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.960 3.040 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.269 1.269 20 C -0.042 4.042 21 O -0.206 6.206 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.005 0.995 32 H 0.005 0.995 33 H 0.264 0.736 34 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.568 -4.000 -0.062 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.012 4.012 3 N -0.243 5.243 4 C -0.166 4.166 5 C 0.081 3.919 6 O -0.268 6.268 7 C 0.320 3.680 8 O -0.425 6.425 9 C -0.139 4.139 10 C -0.126 4.126 11 C -0.012 4.012 12 C -0.586 4.586 13 H 0.072 0.928 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.785 3.215 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.194 1.194 20 C -0.112 4.112 21 O -0.093 6.093 22 H 0.130 0.870 23 H 0.129 0.871 24 H 0.129 0.871 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.073 0.927 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -25.709 -3.185 -0.062 25.905 hybrid contribution 1.370 0.117 0.004 1.375 sum -24.338 -3.068 -0.058 24.531 Atomic orbital electron populations 1.20571 0.77681 1.06686 1.06324 1.27356 0.98150 0.77681 0.98018 1.70163 1.01154 1.31955 1.21022 1.21173 0.92328 0.93593 1.09518 1.20587 0.77492 0.89990 1.03809 1.86357 1.14520 1.41575 1.84302 1.24264 0.85659 0.87210 0.70832 1.90668 1.88050 1.17147 1.46610 1.21537 0.85735 0.99069 1.07541 1.21296 0.93044 0.97152 1.01135 1.19011 0.91286 0.94931 0.95972 1.21658 0.92431 0.93702 1.50779 0.92838 1.25890 1.01892 0.96947 0.94771 1.70054 1.21477 1.13836 1.51505 0.85571 0.78036 0.78840 0.79037 1.19458 1.20566 1.19446 1.25260 0.85367 0.95840 1.04754 1.84509 1.17077 1.37901 1.69772 0.87036 0.87139 0.87138 0.89587 0.89567 0.85793 0.85800 0.93318 0.93313 0.97696 0.97691 0.92677 0.73878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 71.24 0.75 0.36 16 2 C 0.20 3.53 8.34 88.34 0.74 4.26 16 3 N -0.51 -12.30 11.29 -291.96 -3.30 -15.59 16 4 C -0.05 -1.15 7.09 41.26 0.29 -0.86 16 5 C 0.16 3.90 6.09 71.24 0.43 4.33 16 6 O -0.35 -9.00 9.51 -51.40 -0.49 -9.49 16 7 C 0.48 14.57 7.96 71.23 0.57 15.14 16 8 O -0.54 -20.03 15.73 21.96 0.35 -19.68 16 9 C -0.10 -3.08 5.81 29.85 0.17 -2.91 16 10 C -0.09 -3.63 4.44 30.59 0.14 -3.50 16 11 C 0.03 1.27 4.97 29.85 0.15 1.42 16 12 C -0.55 -31.32 9.11 25.60 0.23 -31.08 16 13 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 14 C 0.00 0.18 5.46 84.65 0.46 0.64 16 15 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 16 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 20 C -0.04 -0.83 11.50 66.93 0.77 -0.06 16 21 O -0.21 -3.95 10.78 -3.74 -0.04 -3.99 16 22 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 23 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 25 H 0.09 2.20 8.13 -2.39 -0.02 2.18 16 26 H 0.09 2.20 8.13 -2.39 -0.02 2.18 16 27 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 28 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 29 H 0.05 2.07 8.10 -2.39 -0.02 2.05 16 30 H 0.05 2.07 8.10 -2.39 -0.02 2.05 16 31 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.25 3.47 7.85 -2.91 -0.02 3.45 16 Total: -1.00 -71.75 306.10 4.62 -67.13 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: 1.09 Total: 2.61 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 4.70 Total: -12.25 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: -3.01 Total: -70.84 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.18 Total: -33.16 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -71.75 4.62 -67.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848866914.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.867 kcal (2) G-P(sol) polarization free energy of solvation -71.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds