Wall clock time and date at job start Mon Mar 30 2020 06:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35455 * 126.77243 * 2 1 4 4 C 1.41383 * 103.98301 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.79819 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.46396 * 244.99334 * 5 4 3 7 7 C 1.52999 * 109.47524 * 124.99788 * 5 4 3 8 8 O 1.45202 * 109.47509 * 4.98772 * 5 4 3 9 9 C 1.34230 * 116.99989 * 210.00170 * 8 5 4 10 10 O 1.20821 * 119.99967 * 0.02562 * 9 8 5 11 11 C 1.50698 * 119.99466 * 180.02562 * 9 8 5 12 12 H 1.09007 * 109.47254 * 299.99675 * 11 9 8 13 13 C 1.53000 * 109.47701 * 60.00034 * 11 9 8 14 14 C 1.50699 * 109.47068 * 180.02562 * 11 9 8 15 15 H 1.08000 * 120.00051 * 359.97438 * 14 11 9 16 16 C 1.37879 * 120.00293 * 179.97438 * 14 11 9 17 17 N 1.31511 * 119.99935 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 119.99987 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47431 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47291 * 119.99934 * 18 16 14 21 21 H 1.48499 * 109.47149 * 239.99919 * 18 16 14 22 22 N 1.30174 * 106.39713 * 359.97438 * 4 3 2 23 23 O 1.20921 * 111.60286 * 359.97438 * 22 4 3 24 24 H 1.08996 * 109.47090 * 90.00823 * 1 2 3 25 25 H 1.09005 * 109.46998 * 210.00176 * 1 2 3 26 26 H 1.08995 * 109.47298 * 330.00375 * 1 2 3 27 27 H 1.08001 * 128.00899 * 359.73162 * 3 2 1 28 28 H 1.08999 * 109.47213 * 59.99330 * 7 5 4 29 29 H 1.08995 * 109.47355 * 179.97438 * 7 5 4 30 30 H 1.09007 * 109.46826 * 299.99771 * 7 5 4 31 31 H 1.09003 * 109.46601 * 59.99663 * 13 11 9 32 32 H 1.08997 * 109.47326 * 179.97438 * 13 11 9 33 33 H 1.08998 * 109.47028 * 300.00365 * 13 11 9 34 34 H 0.96999 * 120.00131 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 -0.0006 5 6 4.9210 1.3002 -0.0003 6 1 5.4540 1.1101 -0.9320 7 6 5.7799 0.8442 1.1808 8 8 4.6481 2.7213 0.1197 9 6 5.5234 3.5607 -0.4557 10 8 6.4854 3.1224 -1.0407 11 6 5.3061 5.0495 -0.3720 12 1 4.3531 5.3043 -0.8358 13 6 5.2905 5.4811 1.0958 14 6 6.4214 5.7613 -1.0935 15 1 7.2090 5.1925 -1.5651 16 6 6.4363 7.1388 -1.1516 17 7 5.4769 7.8315 -0.5778 18 14 7.8192 8.0210 -2.0453 19 1 8.7669 7.0215 -2.6002 20 1 7.2538 8.8351 -3.1511 21 1 8.5365 8.9079 -1.0944 22 7 3.4764 -0.7563 -0.0003 23 8 2.3095 -1.0735 0.0008 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 2.0344 2.1271 -0.0040 28 1 5.9847 -0.2226 1.0906 29 1 6.7200 1.3956 1.1807 30 1 5.2468 1.0343 2.1125 31 1 6.2435 5.2263 1.5595 32 1 5.1337 6.5580 1.1562 33 1 4.4836 4.9662 1.6173 34 1 5.4872 8.8006 -0.6189 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851003211.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:20 Heat of formation + Delta-G solvation = -37.675813 kcal Electronic energy + Delta-G solvation = -18557.425157 eV Core-core repulsion = 15458.792256 eV Total energy + Delta-G solvation = -3098.632901 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.93782 -39.79517 -36.39343 -34.23406 -33.93020 -33.50575 -30.97237 -30.22881 -27.89183 -25.25662 -24.72074 -23.48316 -22.43179 -19.84739 -19.71675 -17.66622 -17.41705 -16.71150 -16.17617 -15.65058 -15.30173 -14.70325 -14.17330 -13.76206 -13.64821 -13.41405 -13.16217 -12.79134 -12.55310 -12.49137 -11.96793 -11.59735 -11.45721 -11.10672 -10.97588 -10.82803 -10.74596 -10.52702 -10.33113 -10.08996 -9.83564 -9.32816 -9.19232 -9.07312 -8.48914 -6.14241 -4.19667 1.43719 2.22959 3.02578 3.16901 3.22637 3.27294 3.34882 3.43779 4.24227 4.38364 4.53455 4.96274 5.10176 5.16626 5.19376 5.19948 5.30478 5.36391 5.56417 5.63220 5.70668 5.89519 6.06086 6.18037 6.24091 6.62014 6.82141 6.83729 7.13758 7.38772 7.70333 7.90664 8.09578 8.24688 8.76799 8.89751 9.46265 10.93210 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.036283 B = 0.004751 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.520231 B = 5892.348670 C = 6246.549169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.044 4.044 3 C -0.207 4.207 4 C 0.026 3.974 5 C 0.161 3.839 6 H 0.100 0.900 7 C -0.158 4.158 8 O -0.355 6.355 9 C 0.467 3.533 10 O -0.513 6.513 11 C 0.060 3.940 12 H 0.065 0.935 13 C -0.134 4.134 14 C -0.513 4.513 15 H 0.076 0.924 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 N -0.360 5.360 23 O 0.098 5.902 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.177 0.823 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.096 0.904 33 H 0.024 0.976 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.648 -12.214 3.323 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.107 4.107 3 C -0.228 4.228 4 C -0.132 4.132 5 C 0.105 3.895 6 H 0.117 0.883 7 C -0.216 4.216 8 O -0.273 6.273 9 C 0.311 3.689 10 O -0.399 6.399 11 C 0.041 3.959 12 H 0.082 0.918 13 C -0.191 4.191 14 C -0.551 4.551 15 H 0.095 0.905 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.731 3.269 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.209 1.209 22 N -0.065 5.065 23 O 0.031 5.969 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.195 0.805 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.115 0.885 33 H 0.043 0.957 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.540 -13.209 3.171 16.046 hybrid contribution 0.447 1.221 -0.509 1.396 sum -8.093 -11.988 2.663 14.707 Atomic orbital electron populations 1.20308 0.83923 1.04553 1.04041 1.24504 0.96378 0.86073 1.03743 1.22475 0.90714 1.01489 1.08116 1.23260 0.97008 0.90114 1.02847 1.20300 0.88895 0.79085 1.01262 0.88255 1.22114 1.00069 1.01998 0.97448 1.86661 1.53055 1.15649 1.71933 1.25466 0.79176 0.91228 0.72992 1.90502 1.30098 1.78540 1.40767 1.18782 1.00656 0.79565 0.96938 0.91753 1.21737 0.98125 1.04830 0.94449 1.21176 1.08648 0.91209 1.34051 0.90544 1.24931 0.96355 0.97230 0.95432 1.69882 1.32470 1.06828 1.43850 0.86327 0.81809 0.79402 0.79331 1.19492 1.20865 1.20860 1.73760 0.97065 1.15394 1.20287 1.84793 1.11122 1.33180 1.67792 0.89502 0.90017 0.88919 0.80516 0.90800 0.90822 0.91569 0.94934 0.88517 0.95731 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.45 36.00 0.38 -0.09 16 2 C -0.04 -0.50 7.49 -35.30 -0.26 -0.76 16 3 C -0.21 -2.85 10.46 -39.38 -0.41 -3.26 16 4 C 0.03 0.42 6.54 -82.10 -0.54 -0.12 16 5 C 0.16 2.82 3.11 -27.88 -0.09 2.73 16 6 H 0.10 1.84 7.16 -51.93 -0.37 1.47 16 7 C -0.16 -2.45 9.52 37.16 0.35 -2.10 16 8 O -0.36 -7.02 9.29 -39.26 -0.36 -7.39 16 9 C 0.47 10.81 7.22 36.00 0.26 11.07 16 10 O -0.51 -12.91 14.68 -18.75 -0.28 -13.19 16 11 C 0.06 1.48 2.74 -92.93 -0.25 1.23 16 12 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 13 C -0.13 -3.10 8.90 37.16 0.33 -2.77 16 14 C -0.51 -14.21 8.37 -34.44 -0.29 -14.50 16 15 H 0.08 2.22 6.76 -52.49 -0.35 1.86 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.44 11.32 55.43 0.63 -23.81 16 18 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 N -0.36 -5.60 12.06 33.42 0.40 -5.20 16 23 O 0.10 1.32 11.20 17.19 0.19 1.52 16 24 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.18 2.29 8.05 -52.49 -0.42 1.87 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.10 2.42 6.07 -51.93 -0.32 2.10 16 33 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 34 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 299.11 15.07 4.51 4.51 Total: -1.00 -30.23 299.11 -4.95 -35.17 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -4.40 Total: -0.87 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.62 Total: -6.98 kcal Atomic # 7 Polarization: -30.04 SS G_CDS: 1.03 Total: -29.01 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.45 Total: -19.06 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.23 -4.95 -35.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851003211.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.501 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds