Wall clock time and date at job start Mon Mar 30 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47229 * 2 1 4 4 C 1.52998 * 110.01511 * 304.25304 * 3 2 1 5 5 N 1.46506 * 109.47378 * 303.07778 * 4 3 2 6 6 C 1.34770 * 119.99969 * 174.81485 * 5 4 3 7 7 O 1.21284 * 120.00488 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99964 * 180.02562 * 6 5 4 9 9 H 1.08999 * 109.46935 * 299.99482 * 8 6 5 10 10 C 1.53004 * 109.47064 * 59.99545 * 8 6 5 11 11 C 1.50696 * 109.47250 * 179.97438 * 8 6 5 12 12 H 1.08000 * 119.99943 * 359.97438 * 11 8 6 13 13 C 1.37877 * 120.00220 * 179.97438 * 11 8 6 14 14 N 1.31520 * 119.99488 * 0.02562 * 13 11 8 15 15 Si 1.86792 * 120.00268 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47333 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47601 * 119.99979 * 15 13 11 18 18 H 1.48511 * 109.47137 * 240.00029 * 15 13 11 19 19 C 1.54267 * 110.03229 * 182.86230 * 3 2 1 20 20 C 1.54960 * 104.16240 * 217.13609 * 19 3 2 21 21 C 1.54888 * 102.77810 * 37.88570 * 20 19 3 22 22 C 1.53867 * 110.03470 * 65.64698 * 3 2 1 23 23 H 1.08994 * 109.47181 * 175.70255 * 1 2 3 24 24 H 1.09008 * 109.46640 * 55.70629 * 1 2 3 25 25 H 1.08999 * 109.46983 * 295.71343 * 1 2 3 26 26 H 1.08998 * 109.46928 * 120.00131 * 2 1 3 27 27 H 1.09000 * 109.47106 * 239.99633 * 2 1 3 28 28 H 1.08996 * 109.47470 * 63.08067 * 4 3 2 29 29 H 1.09009 * 109.47027 * 183.08118 * 4 3 2 30 30 H 0.97000 * 119.99521 * 354.81023 * 5 4 3 31 31 H 1.08996 * 109.46804 * 60.00073 * 10 8 6 32 32 H 1.08998 * 109.46940 * 180.02562 * 10 8 6 33 33 H 1.08996 * 109.47070 * 300.00242 * 10 8 6 34 34 H 0.96999 * 119.99418 * 179.97438 * 14 13 11 35 35 H 1.09007 * 110.48776 * 335.78460 * 19 3 2 36 36 H 1.09008 * 110.48397 * 98.42463 * 19 3 2 37 37 H 1.08997 * 110.71796 * 279.57564 * 20 19 3 38 38 H 1.08998 * 110.92463 * 156.29851 * 20 19 3 39 39 H 1.08994 * 110.48534 * 203.40406 * 21 20 19 40 40 H 1.08999 * 110.48428 * 80.76183 * 21 20 19 41 41 H 1.09005 * 110.03126 * 238.57100 * 22 3 2 42 42 H 1.09000 * 110.03506 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4517 2.2059 -1.1882 5 7 1.7928 1.5113 -2.4323 6 6 1.2914 1.9451 -3.6056 7 8 0.5573 2.9103 -3.6316 8 6 1.6418 1.2303 -4.8852 9 1 2.7212 1.2590 -5.0335 10 6 1.1772 -0.2250 -4.8000 11 6 0.9569 1.9088 -6.0434 12 1 0.3302 2.7712 -5.8702 13 6 1.1303 1.4287 -7.3242 14 7 1.8931 0.3783 -7.5350 15 14 0.2820 2.2702 -8.7600 16 1 -0.5138 3.4199 -8.2600 17 1 1.3030 2.7558 -9.7228 18 1 -0.6182 1.3035 -9.4386 19 6 3.5809 1.4581 -0.0724 20 6 3.9911 2.6445 0.8363 21 6 2.9734 2.5523 2.0002 22 6 1.6537 2.1382 1.3169 23 1 -0.3633 -1.0247 -0.0770 24 1 -0.3633 0.5791 -0.8491 25 1 -0.3633 0.4459 0.9259 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 0.3678 2.2574 -1.0864 29 1 1.8629 3.2152 -1.2112 30 1 2.3797 0.7392 -2.4114 31 1 0.0978 -0.2537 -4.6517 32 1 1.4310 -0.7421 -5.7253 33 1 1.6722 -0.7160 -3.9622 34 1 2.0148 0.0403 -8.4360 35 1 3.9904 0.5240 0.3121 36 1 3.9130 1.6284 -1.0966 37 1 3.8864 3.5908 0.3056 38 1 5.0099 2.5197 1.2031 39 1 2.8629 3.5208 2.4879 40 1 3.2844 1.7950 2.7198 41 1 1.0478 3.0202 1.1095 42 1 1.1025 1.4483 1.9560 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597388708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:03 Heat of formation + Delta-G solvation = -72.700308 kcal Electronic energy + Delta-G solvation = -19682.947868 eV Core-core repulsion = 16854.462380 eV Total energy + Delta-G solvation = -2828.485488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.85219 -38.13447 -34.16162 -33.66781 -32.53300 -30.44383 -28.81297 -28.18965 -25.26063 -25.04947 -22.92222 -22.08036 -20.60239 -19.21948 -18.44311 -16.43475 -16.11888 -15.83875 -15.02178 -14.95599 -14.56548 -14.25859 -13.81492 -13.36690 -13.16321 -12.99660 -12.60477 -12.51996 -11.96445 -11.74126 -11.42680 -11.31117 -11.17050 -11.06610 -10.98605 -10.68174 -10.66570 -10.63859 -10.49259 -10.37176 -10.28769 -10.18765 -9.90672 -8.91329 -8.54433 -8.29790 -8.26758 -5.99260 -4.01772 3.34736 3.42108 3.50879 3.83663 4.01387 4.48355 4.51599 4.55858 4.62604 5.10323 5.14879 5.24846 5.30450 5.34157 5.38998 5.55952 5.59866 5.68362 5.69999 5.81406 5.84069 5.91727 5.95516 6.05513 6.09256 6.17545 6.24389 6.28465 6.34014 6.39818 6.52001 6.67007 6.87942 6.98436 7.20839 7.53156 7.80437 8.04588 8.21856 8.53770 9.07978 9.34477 9.63850 11.08462 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.035875 B = 0.004846 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.292135 B = 5776.052743 C = 5908.423652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 C -0.072 4.072 4 C 0.132 3.868 5 N -0.743 5.743 6 C 0.518 3.482 7 O -0.549 6.549 8 C 0.028 3.972 9 H 0.050 0.950 10 C -0.130 4.130 11 C -0.497 4.497 12 H 0.074 0.926 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.898 3.102 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.120 4.120 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.113 4.113 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.394 0.606 31 H 0.030 0.970 32 H 0.092 0.908 33 H 0.011 0.989 34 H 0.259 0.741 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.222 -1.397 17.957 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.146 4.146 3 C -0.073 4.073 4 C 0.008 3.992 5 N -0.398 5.398 6 C 0.307 3.693 7 O -0.425 6.425 8 C 0.007 3.993 9 H 0.068 0.932 10 C -0.188 4.188 11 C -0.536 4.536 12 H 0.092 0.908 13 C -0.143 4.143 14 N -0.537 5.537 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.157 4.157 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.151 4.151 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.228 0.772 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.725 -0.784 17.776 18.001 hybrid contribution -0.116 -0.025 -0.763 0.772 sum 2.609 -0.809 17.014 17.232 Atomic orbital electron populations 1.21871 0.95755 1.01653 1.02098 1.21582 0.96229 0.95127 1.01707 1.21464 0.95365 0.95620 0.94818 1.21302 0.99702 0.95132 0.83058 1.46314 1.52804 1.34260 1.06437 1.21923 0.78232 0.83777 0.85321 1.90524 1.36760 1.28119 1.87146 1.18867 0.98608 0.93126 0.88707 0.93180 1.21722 0.98565 0.97299 1.01262 1.21200 1.28793 1.13637 0.89974 0.90783 1.24953 0.95390 0.95124 0.98871 1.69888 1.38866 1.23789 1.21182 0.86418 0.79333 0.79636 0.81985 1.19584 1.21086 1.21094 1.22531 0.94217 0.98477 1.00489 1.22490 0.98450 0.98864 0.96409 1.22343 0.95302 1.00860 0.97573 1.22224 0.97481 1.00193 0.95238 0.92998 0.91780 0.92973 0.92117 0.91720 0.91758 0.92688 0.77150 0.95076 0.88950 0.97027 0.93105 0.91463 0.90974 0.91466 0.91826 0.91934 0.91898 0.91532 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.34 37.16 0.35 -1.45 16 2 C -0.11 -1.19 4.41 -26.73 -0.12 -1.30 16 3 C -0.07 -0.81 0.41 -153.40 -0.06 -0.88 16 4 C 0.13 1.99 3.73 -4.04 -0.02 1.98 16 5 N -0.74 -13.01 4.65 -60.29 -0.28 -13.29 16 6 C 0.52 11.99 7.15 -10.99 -0.08 11.91 16 7 O -0.55 -14.66 15.45 5.55 0.09 -14.57 16 8 C 0.03 0.71 2.64 -92.92 -0.25 0.46 16 9 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 10 C -0.13 -3.03 8.87 37.16 0.33 -2.70 16 11 C -0.50 -14.35 8.37 -34.44 -0.29 -14.63 16 12 H 0.07 2.27 6.75 -52.49 -0.35 1.91 16 13 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 14 N -0.90 -25.46 11.32 55.43 0.63 -24.84 16 15 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 16 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.12 -1.27 5.64 -25.03 -0.14 -1.41 16 20 C -0.12 -1.20 6.91 -24.70 -0.17 -1.38 16 21 C -0.12 -1.09 6.83 -25.07 -0.17 -1.26 16 22 C -0.11 -1.12 5.65 -25.62 -0.14 -1.26 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.89 6.23 -51.92 -0.32 0.57 16 25 H 0.05 0.53 6.96 -51.93 -0.36 0.17 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.75 6.97 -51.93 -0.36 0.39 16 28 H 0.06 1.05 6.49 -51.93 -0.34 0.71 16 29 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.39 6.12 6.18 -40.82 -0.25 5.86 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 33 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.07 0.64 7.86 -51.93 -0.41 0.24 16 36 H 0.07 0.86 7.09 -51.92 -0.37 0.49 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16 42 H 0.07 0.62 6.72 -51.93 -0.35 0.27 16 LS Contribution 321.66 15.07 4.85 4.85 Total: -1.00 -30.81 321.66 -7.76 -38.56 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.16 Total: 2.64 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -0.85 Total: -10.42 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.35 Total: -38.13 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.09 Total: -14.57 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.81 -7.76 -38.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597388708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.138 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds