Wall clock time and date at job start Mon Mar 30 2020 07:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47213 * 2 1 4 4 C 1.50701 * 109.46995 * 120.00057 * 2 1 3 5 5 O 1.21285 * 119.99531 * 240.00075 * 4 2 1 6 6 N 1.34776 * 120.00184 * 59.99284 * 4 2 1 7 7 C 1.46500 * 119.99790 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46891 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.46936 * 55.00291 * 8 7 6 10 10 C 1.50695 * 109.46934 * 295.00284 * 8 7 6 11 11 H 1.07998 * 120.00117 * 116.44425 * 10 8 7 12 12 C 1.37875 * 120.00008 * 296.43747 * 10 8 7 13 13 N 1.31509 * 120.00146 * 6.21276 * 12 10 8 14 14 Si 1.86806 * 119.99907 * 186.21684 * 12 10 8 15 15 H 1.48501 * 109.47041 * 84.98272 * 14 12 10 16 16 H 1.48498 * 109.47169 * 204.98206 * 14 12 10 17 17 H 1.48496 * 109.47228 * 324.98241 * 14 12 10 18 18 C 1.53003 * 109.46819 * 175.00218 * 8 7 6 19 19 C 1.54272 * 110.03224 * 295.73695 * 18 8 7 20 20 C 1.54887 * 104.19604 * 217.11152 * 19 18 8 21 21 C 1.54888 * 102.74930 * 37.93916 * 20 19 18 22 22 C 1.53874 * 110.02760 * 178.57410 * 18 8 7 23 23 H 1.09004 * 109.46776 * 300.00506 * 1 2 3 24 24 H 1.09004 * 109.46949 * 59.99908 * 1 2 3 25 25 H 1.08998 * 109.47417 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46776 * 239.99494 * 2 1 3 27 27 H 1.08998 * 109.47413 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.46833 * 299.99649 * 3 2 1 29 29 H 1.08995 * 109.47502 * 59.99854 * 3 2 1 30 30 H 0.96996 * 120.00039 * 0.02562 * 6 4 2 31 31 H 1.08999 * 109.47351 * 300.00429 * 7 6 4 32 32 H 1.08995 * 109.46973 * 60.00485 * 7 6 4 33 33 H 0.97000 * 120.00340 * 179.97438 * 13 12 10 34 34 H 1.08995 * 110.01959 * 57.17708 * 18 8 7 35 35 H 1.09003 * 110.48226 * 335.78742 * 19 18 8 36 36 H 1.08992 * 110.48582 * 98.42744 * 19 18 8 37 37 H 1.09006 * 110.75039 * 279.62846 * 20 19 18 38 38 H 1.08989 * 110.91861 * 156.33312 * 20 19 18 39 39 H 1.09005 * 110.48623 * 203.38415 * 21 20 19 40 40 H 1.08995 * 110.59813 * 80.79447 * 21 20 19 41 41 H 1.08999 * 110.02935 * 238.56950 * 22 18 8 42 42 H 1.08995 * 110.03660 * 359.97438 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -0.1209 2.0288 6 7 1.7066 -2.0007 1.4438 7 6 2.1954 -2.6914 2.6398 8 6 1.6857 -4.1341 2.6396 9 1 1.9740 -4.6212 1.7080 10 6 0.1839 -4.1362 2.7638 11 1 -0.4237 -4.5287 1.9619 12 6 -0.4145 -3.6370 3.9012 13 7 0.3149 -3.0485 4.8237 14 14 -2.2614 -3.7966 4.1318 15 1 -2.5738 -5.1234 4.7212 16 1 -2.7411 -2.7255 5.0416 17 1 -2.9375 -3.6680 2.8160 18 6 2.2962 -4.8908 3.8210 19 6 3.8265 -4.9889 3.6517 20 6 4.1791 -6.3964 4.1935 21 6 2.9897 -7.2591 3.7036 22 6 1.7642 -6.3342 3.8539 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.1492 -2.4722 0.8052 31 1 3.2854 -2.6915 2.6393 32 1 1.8326 -2.1776 3.5299 33 1 -0.1061 -2.6970 5.6238 34 1 2.0550 -4.3824 4.7545 35 1 4.1000 -4.9054 2.5999 36 1 4.3254 -4.2180 4.2389 37 1 4.2288 -6.3898 5.2824 38 1 5.1166 -6.7537 3.7677 39 1 2.8779 -8.1450 4.3288 40 1 3.1267 -7.5442 2.6605 41 1 1.2654 -6.5267 4.8038 42 1 1.0708 -6.4955 3.0286 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259972607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:46 Heat of formation + Delta-G solvation = -77.156624 kcal Electronic energy + Delta-G solvation = -19830.497090 eV Core-core repulsion = 17001.818362 eV Total energy + Delta-G solvation = -2828.678728 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.08225 -37.69081 -34.55666 -33.95937 -32.54867 -30.03811 -27.91218 -26.90072 -26.12292 -25.00822 -22.62113 -20.71615 -19.80024 -19.25606 -18.36811 -16.54291 -16.03154 -15.29080 -14.88954 -14.63718 -14.52865 -14.01658 -13.58548 -13.08498 -12.91415 -12.51815 -12.46551 -12.01277 -11.79324 -11.55732 -11.51120 -11.12009 -11.00281 -10.85783 -10.78213 -10.61250 -10.47931 -10.36176 -10.17325 -9.98696 -9.75617 -9.53354 -9.12535 -8.90536 -8.68962 -8.41276 -7.84890 -6.01074 -4.12642 3.25661 3.33814 3.34925 3.45344 4.17676 4.38216 5.13516 5.20935 5.27731 5.32255 5.47345 5.52652 5.57065 5.78944 5.81003 6.01778 6.07247 6.18374 6.21162 6.27016 6.37710 6.40845 6.44900 6.48996 6.51567 6.62489 6.71086 6.77297 6.79502 7.01172 7.02204 7.14417 7.32707 7.42525 7.68680 7.75074 7.83646 8.10193 8.37623 8.54198 8.86700 9.15469 9.54814 10.97920 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.007929 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.017293 B = 3530.559601 C = 4739.579076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.128 4.128 4 C 0.503 3.497 5 O -0.561 6.561 6 N -0.700 5.700 7 C 0.119 3.881 8 C 0.046 3.954 9 H 0.017 0.983 10 C -0.515 4.515 11 H 0.052 0.948 12 C 0.074 3.926 13 N -0.877 5.877 14 Si 0.883 3.117 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.077 4.077 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.100 4.100 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.394 0.606 31 H 0.024 0.976 32 H 0.100 0.900 33 H 0.261 0.739 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.227 -0.396 -6.812 7.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.138 4.138 3 C -0.186 4.186 4 C 0.288 3.712 5 O -0.441 6.441 6 N -0.348 5.348 7 C -0.003 4.003 8 C 0.027 3.973 9 H 0.036 0.964 10 C -0.553 4.553 11 H 0.071 0.929 12 C -0.129 4.129 13 N -0.514 5.514 14 Si 0.711 3.289 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.201 1.201 18 C -0.097 4.097 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.164 4.164 22 C -0.137 4.137 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.228 0.772 31 H 0.043 0.957 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.695 0.092 -6.030 6.606 hybrid contribution -1.377 -0.372 -0.063 1.428 sum 1.318 -0.281 -6.093 6.241 Atomic orbital electron populations 1.21763 0.93284 1.02833 1.02124 1.21283 0.97422 0.97689 0.97399 1.21560 1.01425 0.94183 1.01430 1.20465 0.80881 0.82476 0.87381 1.90627 1.39503 1.66348 1.47630 1.46030 1.51583 1.11158 1.25988 1.21747 0.94564 0.96223 0.87810 1.19006 0.95266 0.90033 0.93035 0.96429 1.20986 0.91023 1.40786 1.02524 0.92935 1.24868 0.97426 0.94493 0.96086 1.69751 1.35042 1.37208 1.09428 0.86760 0.86362 0.77726 0.78038 1.20671 1.21427 1.20124 1.21698 0.90046 0.94722 1.03210 1.22554 0.98905 0.95217 0.99493 1.22464 0.97040 0.96694 0.99889 1.22416 0.96600 0.97717 0.99703 1.21980 0.95874 0.94807 1.01080 0.92171 0.92244 0.91724 0.89392 0.92320 0.92805 0.92115 0.77240 0.95732 0.88166 0.92816 0.88194 0.92958 0.92972 0.92371 0.93203 0.93310 0.92724 0.93625 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.09 37.16 0.34 -1.60 16 2 C -0.12 -1.73 3.26 -91.77 -0.30 -2.03 16 3 C -0.13 -1.79 8.48 37.16 0.32 -1.47 16 4 C 0.50 10.08 7.15 -10.98 -0.08 10.00 16 5 O -0.56 -13.45 15.98 5.55 0.09 -13.36 16 6 N -0.70 -14.27 5.24 -60.29 -0.32 -14.59 16 7 C 0.12 2.76 4.83 -4.04 -0.02 2.74 16 8 C 0.05 1.03 1.45 -91.77 -0.13 0.89 16 9 H 0.02 0.38 8.09 -51.93 -0.42 -0.04 16 10 C -0.52 -12.55 7.01 -34.44 -0.24 -12.79 16 11 H 0.05 1.28 7.82 -52.49 -0.41 0.87 16 12 C 0.07 1.87 5.12 -17.82 -0.09 1.78 16 13 N -0.88 -23.14 9.41 55.43 0.52 -22.62 16 14 Si 0.88 20.22 29.54 -169.99 -5.02 15.20 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 18 C -0.08 -1.67 2.19 -89.50 -0.20 -1.86 16 19 C -0.12 -2.34 5.28 -25.07 -0.13 -2.47 16 20 C -0.12 -2.02 6.91 -24.74 -0.17 -2.19 16 21 C -0.13 -2.11 6.83 -25.07 -0.17 -2.28 16 22 C -0.10 -1.99 6.01 -25.61 -0.15 -2.15 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.89 7.56 -51.93 -0.39 0.50 16 26 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 30 H 0.39 7.27 7.65 -40.82 -0.31 6.96 16 31 H 0.02 0.57 7.22 -51.93 -0.37 0.20 16 32 H 0.10 2.71 6.02 -51.93 -0.31 2.39 16 33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.10 2.48 6.17 -51.93 -0.32 2.16 16 35 H 0.05 0.97 7.80 -51.93 -0.41 0.56 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.72 8.14 -51.94 -0.42 0.30 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.38 7.04 -51.93 -0.37 1.01 16 LS Contribution 326.40 15.07 4.92 4.92 Total: -1.00 -27.57 326.40 -8.36 -35.93 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.52 Total: 7.97 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -1.03 Total: -13.44 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.21 Total: -37.21 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.57 -8.36 -35.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259972607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.228 kcal (2) G-P(sol) polarization free energy of solvation -27.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds