Wall clock time and date at job start Mon Mar 30 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47333 * 2 1 4 4 N 1.46498 * 109.47272 * 120.00546 * 2 1 3 5 5 C 1.37090 * 120.00043 * 128.38358 * 4 2 1 6 6 H 1.08003 * 120.00166 * 202.45939 * 5 4 2 7 7 C 1.38949 * 120.00324 * 22.46245 * 5 4 2 8 8 N 1.31412 * 119.99977 * 17.37105 * 7 5 4 9 9 Si 1.86801 * 120.00299 * 197.37163 * 7 5 4 10 10 H 1.48496 * 109.47392 * 59.99908 * 9 7 5 11 11 H 1.48506 * 109.46926 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47084 * 299.99814 * 9 7 5 13 13 C 1.34775 * 119.99675 * 308.38551 * 4 2 1 14 14 O 1.21300 * 119.99954 * 185.83803 * 13 4 2 15 15 C 1.50703 * 120.00386 * 5.83776 * 13 4 2 16 16 C 1.52997 * 109.47079 * 180.02562 * 15 13 4 17 17 C 1.53001 * 109.47052 * 65.00184 * 16 15 13 18 18 C 1.53009 * 109.46825 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.46768 * 299.99811 * 18 17 16 20 20 C 1.53001 * 109.47293 * 60.00476 * 19 18 17 21 21 C 1.52998 * 109.46917 * 185.00377 * 16 15 13 22 22 H 1.09007 * 109.46715 * 323.75673 * 1 2 3 23 23 H 1.09000 * 109.47413 * 83.74609 * 1 2 3 24 24 H 1.08989 * 109.47205 * 203.75525 * 1 2 3 25 25 H 1.08998 * 109.46621 * 240.00763 * 2 1 3 26 26 H 1.08996 * 109.46901 * 179.36385 * 3 2 1 27 27 H 1.08994 * 109.47255 * 299.36712 * 3 2 1 28 28 H 1.09002 * 109.46525 * 59.36932 * 3 2 1 29 29 H 0.96997 * 120.00861 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46759 * 60.02710 * 15 13 4 31 31 H 1.08999 * 109.46749 * 300.02661 * 15 13 4 32 32 H 1.08997 * 109.47147 * 305.00051 * 16 15 13 33 33 H 1.08998 * 109.47340 * 299.99571 * 17 16 15 34 34 H 1.08997 * 109.47253 * 59.99931 * 17 16 15 35 35 H 1.08999 * 109.46444 * 180.02562 * 18 17 16 36 36 H 1.08997 * 109.47150 * 60.00004 * 18 17 16 37 37 H 1.08997 * 109.47442 * 300.00014 * 19 18 17 38 38 H 1.08999 * 109.46626 * 180.02562 * 19 18 17 39 39 H 1.08998 * 109.47340 * 179.97438 * 20 19 18 40 40 H 1.09003 * 109.46864 * 59.99319 * 20 19 18 41 41 H 1.09011 * 109.46863 * 300.00011 * 21 16 15 42 42 H 1.08997 * 109.47767 * 59.99662 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.9419 -1.6969 1.0775 6 1 3.0381 -2.4364 1.8588 7 6 3.7542 -1.7654 -0.0477 8 7 3.8916 -0.7140 -0.8239 9 14 4.6510 -3.3521 -0.4572 10 1 3.6622 -4.4410 -0.6618 11 1 5.4461 -3.1653 -1.6975 12 1 5.5580 -3.7111 0.6624 13 6 1.5597 -0.3369 2.4130 14 8 2.0398 -0.8336 3.4101 15 6 0.4502 0.6757 2.5350 16 6 0.1215 0.8965 4.0128 17 6 1.3254 1.5286 4.7142 18 6 0.9964 1.7499 6.1920 19 6 -0.2109 2.6821 6.3116 20 6 -1.4148 2.0500 5.6102 21 6 -1.0860 1.8283 4.1330 22 1 -0.3633 0.8289 0.6076 23 1 -0.3634 0.1119 -1.0215 24 1 -0.3633 -0.9405 0.4139 25 1 1.8932 -0.5137 -0.8901 26 1 3.1300 1.4425 0.0114 27 1 1.6861 1.9531 -0.8955 28 1 1.6675 1.9595 0.8843 29 1 4.4589 -0.7615 -1.6093 30 1 -0.4355 0.3084 2.0167 31 1 0.7678 1.6181 2.0887 32 1 -0.1102 -0.0605 4.4804 33 1 2.1856 0.8647 4.6286 34 1 1.5571 2.4855 4.2467 35 1 1.8539 2.2006 6.6915 36 1 0.7644 0.7931 6.6598 37 1 0.0210 3.6389 5.8438 38 1 -0.4450 2.8401 7.3643 39 1 -2.2750 2.7139 5.6957 40 1 -1.6467 1.0932 6.0781 41 1 -0.8543 2.7854 3.6654 42 1 -1.9437 1.3781 3.6333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080213669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:35 Heat of formation + Delta-G solvation = -46.060575 kcal Electronic energy + Delta-G solvation = -20236.347737 eV Core-core repulsion = 17409.017435 eV Total energy + Delta-G solvation = -2827.330303 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.36977 -37.72821 -35.30308 -32.94737 -31.64312 -30.41091 -30.07398 -27.09260 -26.22940 -24.44836 -22.26446 -21.77065 -20.43057 -19.34680 -18.54662 -16.91021 -15.42512 -15.01329 -14.80366 -14.39757 -14.17826 -13.84130 -13.62185 -13.43335 -13.09183 -12.86101 -12.32609 -12.01142 -11.88965 -11.69914 -11.59444 -11.44070 -11.05088 -10.98357 -10.84651 -10.73494 -10.41560 -10.32339 -10.25853 -10.15438 -9.96483 -9.81149 -9.60216 -9.42313 -8.78187 -8.15049 -7.55489 -6.25990 -3.78231 3.22009 3.27617 3.31742 4.01672 4.18958 4.83274 4.98955 5.05917 5.10999 5.18549 5.50154 5.54451 5.70809 5.72353 5.82443 5.84336 5.85288 5.89941 6.02321 6.11480 6.12611 6.19910 6.27159 6.28375 6.31322 6.40251 6.47411 6.51065 6.60235 6.66345 6.69618 6.76984 6.84127 6.99806 7.08866 7.36848 7.48734 7.66955 8.24905 8.61562 9.28220 9.55288 10.13629 10.77398 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.032380 B = 0.006034 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.514183 B = 4639.608893 C = 5062.728754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.140 3.860 3 C -0.148 4.148 4 N -0.442 5.442 5 C -0.300 4.300 6 H 0.095 0.905 7 C 0.028 3.972 8 N -0.877 5.877 9 Si 0.921 3.079 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.454 3.546 14 O -0.587 6.587 15 C -0.149 4.149 16 C -0.068 4.068 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.115 4.115 22 H 0.063 0.937 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.266 0.734 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.699 6.463 4.338 11.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.035 3.965 3 C -0.206 4.206 4 N -0.162 5.162 5 C -0.428 4.428 6 H 0.113 0.887 7 C -0.174 4.174 8 N -0.517 5.517 9 Si 0.748 3.252 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.243 3.757 14 O -0.472 6.472 15 C -0.188 4.188 16 C -0.086 4.086 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.153 4.153 22 H 0.081 0.919 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.135 0.865 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.338 6.249 4.624 11.399 hybrid contribution 0.471 -0.619 -0.484 0.916 sum -7.867 5.629 4.140 10.522 Atomic orbital electron populations 1.22839 0.98398 1.01684 1.00991 1.21004 0.89793 0.93498 0.92210 1.22164 1.03811 0.95871 0.98742 1.43783 1.36953 1.31675 1.03742 1.19597 1.13492 1.03973 1.05701 0.88708 1.25235 0.96787 0.97998 0.97424 1.69953 1.38046 1.27341 1.16372 0.86084 0.79252 0.82089 0.77792 1.20124 1.21059 1.19974 1.20115 0.86700 0.85214 0.83712 1.90459 1.62362 1.58091 1.36318 1.22425 0.99323 0.99998 0.97060 1.20864 0.94248 0.98579 0.94954 1.21687 0.99638 1.00428 0.93767 1.21515 0.96990 0.99193 0.97716 1.21545 0.95708 0.98905 0.99427 1.21494 0.97281 1.00490 0.96162 1.21612 0.98021 0.99750 0.95874 0.91873 0.93174 0.92756 0.86489 0.90443 0.94021 0.94428 0.92387 0.89246 0.89803 0.91065 0.89280 0.93359 0.92738 0.92249 0.92393 0.92829 0.92686 0.92220 0.92336 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 7.68 37.16 0.29 -2.93 16 2 C 0.14 3.06 2.30 -67.93 -0.16 2.90 16 3 C -0.15 -3.02 8.82 37.16 0.33 -2.69 16 4 N -0.44 -11.18 2.53 -107.73 -0.27 -11.45 16 5 C -0.30 -8.32 9.24 -14.94 -0.14 -8.46 16 6 H 0.10 2.77 7.50 -52.48 -0.39 2.38 16 7 C 0.03 0.72 4.94 -17.47 -0.09 0.64 16 8 N -0.88 -22.90 9.61 55.50 0.53 -22.36 16 9 Si 0.92 20.75 29.59 -169.99 -5.03 15.72 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.45 10.96 6.89 -10.98 -0.08 10.89 16 14 O -0.59 -16.03 13.70 5.54 0.08 -15.96 16 15 C -0.15 -2.76 2.88 -27.88 -0.08 -2.84 16 16 C -0.07 -1.14 1.84 -90.62 -0.17 -1.31 16 17 C -0.12 -2.03 4.95 -26.73 -0.13 -2.17 16 18 C -0.12 -1.68 5.92 -26.73 -0.16 -1.83 16 19 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 20 C -0.12 -1.40 5.92 -26.76 -0.16 -1.55 16 21 C -0.11 -1.53 5.20 -26.76 -0.14 -1.67 16 22 H 0.06 1.00 4.89 -51.92 -0.25 0.74 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 1.00 7.88 -51.94 -0.41 0.59 16 25 H 0.12 2.85 5.63 -51.93 -0.29 2.56 16 26 H 0.08 1.82 7.15 -51.93 -0.37 1.45 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.71 5.02 -51.93 -0.26 0.45 16 29 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 30 H 0.09 1.53 5.06 -51.93 -0.26 1.27 16 31 H 0.08 1.50 4.95 -51.93 -0.26 1.24 16 32 H 0.07 1.32 7.95 -51.93 -0.41 0.91 16 33 H 0.09 1.88 5.95 -51.93 -0.31 1.57 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 309.11 15.07 4.66 4.66 Total: -1.00 -28.89 309.11 -7.88 -36.77 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.01 Total: 5.23 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -0.84 Total: -12.61 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.26 Total: -33.81 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.08 Total: -15.96 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.89 -7.88 -36.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080213669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.291 kcal (2) G-P(sol) polarization free energy of solvation -28.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds