Wall clock time and date at job start Mon Mar 30 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47333 * 2 1 4 4 N 1.46498 * 109.47272 * 120.00546 * 2 1 3 5 5 C 1.37090 * 120.00043 * 128.38358 * 4 2 1 6 6 H 1.08003 * 120.00166 * 202.45939 * 5 4 2 7 7 C 1.38949 * 120.00324 * 22.46245 * 5 4 2 8 8 N 1.31412 * 119.99977 * 17.37105 * 7 5 4 9 9 Si 1.86801 * 120.00299 * 197.37163 * 7 5 4 10 10 H 1.48496 * 109.47392 * 59.99908 * 9 7 5 11 11 H 1.48506 * 109.46926 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47084 * 299.99814 * 9 7 5 13 13 C 1.34775 * 119.99675 * 308.38551 * 4 2 1 14 14 O 1.21300 * 119.99954 * 185.83803 * 13 4 2 15 15 C 1.50703 * 120.00386 * 5.83776 * 13 4 2 16 16 C 1.52997 * 109.47079 * 180.02562 * 15 13 4 17 17 C 1.53001 * 109.47052 * 65.00184 * 16 15 13 18 18 C 1.53009 * 109.46825 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.46768 * 299.99811 * 18 17 16 20 20 C 1.53001 * 109.47293 * 60.00476 * 19 18 17 21 21 C 1.52998 * 109.46917 * 185.00377 * 16 15 13 22 22 H 1.09007 * 109.46715 * 323.75673 * 1 2 3 23 23 H 1.09000 * 109.47413 * 83.74609 * 1 2 3 24 24 H 1.08989 * 109.47205 * 203.75525 * 1 2 3 25 25 H 1.08998 * 109.46621 * 240.00763 * 2 1 3 26 26 H 1.08996 * 109.46901 * 179.36385 * 3 2 1 27 27 H 1.08994 * 109.47255 * 299.36712 * 3 2 1 28 28 H 1.09002 * 109.46525 * 59.36932 * 3 2 1 29 29 H 0.96997 * 120.00861 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46759 * 60.02710 * 15 13 4 31 31 H 1.08999 * 109.46749 * 300.02661 * 15 13 4 32 32 H 1.08997 * 109.47147 * 305.00051 * 16 15 13 33 33 H 1.08998 * 109.47340 * 299.99571 * 17 16 15 34 34 H 1.08997 * 109.47253 * 59.99931 * 17 16 15 35 35 H 1.08999 * 109.46444 * 180.02562 * 18 17 16 36 36 H 1.08997 * 109.47150 * 60.00004 * 18 17 16 37 37 H 1.08997 * 109.47442 * 300.00014 * 19 18 17 38 38 H 1.08999 * 109.46626 * 180.02562 * 19 18 17 39 39 H 1.08998 * 109.47340 * 179.97438 * 20 19 18 40 40 H 1.09003 * 109.46864 * 59.99319 * 20 19 18 41 41 H 1.09011 * 109.46863 * 300.00011 * 21 16 15 42 42 H 1.08997 * 109.47767 * 59.99662 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.9419 -1.6969 1.0775 6 1 3.0381 -2.4364 1.8588 7 6 3.7542 -1.7654 -0.0477 8 7 3.8916 -0.7140 -0.8239 9 14 4.6510 -3.3521 -0.4572 10 1 3.6622 -4.4410 -0.6618 11 1 5.4461 -3.1653 -1.6975 12 1 5.5580 -3.7111 0.6624 13 6 1.5597 -0.3369 2.4130 14 8 2.0398 -0.8336 3.4101 15 6 0.4502 0.6757 2.5350 16 6 0.1215 0.8965 4.0128 17 6 1.3254 1.5286 4.7142 18 6 0.9964 1.7499 6.1920 19 6 -0.2109 2.6821 6.3116 20 6 -1.4148 2.0500 5.6102 21 6 -1.0860 1.8283 4.1330 22 1 -0.3633 0.8289 0.6076 23 1 -0.3634 0.1119 -1.0215 24 1 -0.3633 -0.9405 0.4139 25 1 1.8932 -0.5137 -0.8901 26 1 3.1300 1.4425 0.0114 27 1 1.6861 1.9531 -0.8955 28 1 1.6675 1.9595 0.8843 29 1 4.4589 -0.7615 -1.6093 30 1 -0.4355 0.3084 2.0167 31 1 0.7678 1.6181 2.0887 32 1 -0.1102 -0.0605 4.4804 33 1 2.1856 0.8647 4.6286 34 1 1.5571 2.4855 4.2467 35 1 1.8539 2.2006 6.6915 36 1 0.7644 0.7931 6.6598 37 1 0.0210 3.6389 5.8438 38 1 -0.4450 2.8401 7.3643 39 1 -2.2750 2.7139 5.6957 40 1 -1.6467 1.0932 6.0781 41 1 -0.8543 2.7854 3.6654 42 1 -1.9437 1.3781 3.6333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080213669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:34 Heat of formation + Delta-G solvation = -61.441731 kcal Electronic energy + Delta-G solvation = -20237.014714 eV Core-core repulsion = 17409.017435 eV Total energy + Delta-G solvation = -2827.997280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.05116 -39.07798 -37.17935 -34.71009 -33.18142 -31.94357 -31.49120 -28.60339 -27.78317 -26.33704 -23.41092 -23.23488 -21.92891 -20.57102 -20.33951 -18.79094 -17.30671 -16.56848 -16.24177 -16.04263 -15.88047 -15.05314 -14.96240 -14.86685 -14.71316 -14.49345 -13.83557 -13.70261 -13.22026 -13.11358 -13.06848 -12.93132 -12.71596 -12.65969 -12.22695 -12.08017 -12.01904 -11.92181 -11.78595 -11.64347 -11.48579 -11.21519 -10.94725 -10.79905 -10.59618 -10.04638 -9.51644 -8.27581 -5.87934 1.38383 1.40368 1.50096 2.14317 2.30461 3.11876 3.16279 3.85159 3.90139 3.94469 4.15822 4.25789 4.35266 4.45960 4.55566 4.56494 4.59183 4.68554 4.71525 4.74024 4.85255 4.91486 4.92560 5.02467 5.07375 5.15090 5.15801 5.25733 5.31436 5.31704 5.39930 5.40997 5.47627 5.48209 5.62247 5.67735 5.72566 5.83461 6.21639 6.62875 7.26694 7.62872 8.20372 8.72836 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.032380 B = 0.006034 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.514183 B = 4639.608893 C = 5062.728754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 C -0.139 4.139 4 N -0.456 5.456 5 C -0.341 4.341 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.882 5.882 9 Si 0.980 3.020 10 H -0.270 1.270 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.439 3.561 14 O -0.632 6.632 15 C -0.136 4.136 16 C -0.066 4.066 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.108 4.108 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.090 0.910 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.271 0.729 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.755 8.208 3.734 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.030 3.970 3 C -0.197 4.197 4 N -0.175 5.175 5 C -0.470 4.470 6 H 0.081 0.919 7 C -0.203 4.203 8 N -0.521 5.521 9 Si 0.805 3.195 10 H -0.195 1.195 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.230 3.770 14 O -0.520 6.520 15 C -0.175 4.175 16 C -0.085 4.085 17 C -0.155 4.155 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.146 4.146 22 H 0.106 0.894 23 H 0.095 0.905 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.410 8.018 3.990 13.732 hybrid contribution 1.192 -1.173 -0.301 1.700 sum -9.218 6.844 3.689 12.059 Atomic orbital electron populations 1.22724 0.94794 1.02168 1.03234 1.21126 0.92665 0.93487 0.89729 1.22048 1.01312 0.95416 1.00888 1.44075 1.36678 1.31453 1.05260 1.19505 1.16021 1.05282 1.06157 0.91889 1.25903 0.96952 1.00767 0.96670 1.70048 1.37699 1.28212 1.16171 0.85200 0.78101 0.78641 0.77575 1.19499 1.19431 1.20779 1.21143 0.87502 0.85582 0.82797 1.90430 1.63998 1.59822 1.37717 1.22407 0.97673 0.98481 0.98893 1.20856 0.95820 0.98468 0.93310 1.21604 0.98180 0.99458 0.96230 1.21491 0.98762 0.99559 0.95428 1.21527 0.94315 0.98347 1.00902 1.21516 0.98050 1.00908 0.94890 1.21575 0.96339 0.99239 0.97424 0.89366 0.90519 0.93789 0.89242 0.94219 0.91036 0.92956 0.91950 0.87085 0.88462 0.93626 0.94253 0.92609 0.92261 0.93431 0.91449 0.90941 0.89955 0.92770 0.90969 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.68 7.68 71.98 0.55 -5.12 16 2 C 0.13 5.81 2.30 44.99 0.10 5.91 16 3 C -0.14 -5.50 8.82 71.98 0.63 -4.86 16 4 N -0.46 -23.75 2.53 -613.13 -1.55 -25.30 16 5 C -0.34 -19.88 9.24 84.04 0.78 -19.10 16 6 H 0.06 3.96 7.50 -2.91 -0.02 3.94 16 7 C 0.00 -0.07 4.94 84.93 0.42 0.35 16 8 N -0.88 -46.64 9.61 21.66 0.21 -46.43 16 9 Si 0.98 43.35 29.59 68.60 2.03 45.38 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 C 0.44 21.94 6.89 87.66 0.60 22.55 16 14 O -0.63 -36.70 13.70 -3.09 -0.04 -36.74 16 15 C -0.14 -4.90 2.88 29.85 0.09 -4.81 16 16 C -0.07 -2.16 1.84 -10.80 -0.02 -2.18 16 17 C -0.12 -4.09 4.95 30.60 0.15 -3.94 16 18 C -0.11 -3.24 5.92 30.60 0.18 -3.06 16 19 C -0.11 -2.41 5.92 30.59 0.18 -2.23 16 20 C -0.12 -2.38 5.92 30.58 0.18 -2.20 16 21 C -0.11 -2.53 5.20 30.58 0.16 -2.37 16 22 H 0.09 2.45 4.89 -2.38 -0.01 2.44 16 23 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.04 1.54 7.88 -2.39 -0.02 1.52 16 25 H 0.09 4.38 5.63 -2.39 -0.01 4.37 16 26 H 0.04 1.86 7.15 -2.39 -0.02 1.84 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.05 1.87 5.02 -2.39 -0.01 1.86 16 29 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 30 H 0.11 3.53 5.06 -2.38 -0.01 3.52 16 31 H 0.10 3.26 4.95 -2.39 -0.01 3.25 16 32 H 0.05 1.73 7.95 -2.39 -0.02 1.71 16 33 H 0.04 1.76 5.95 -2.39 -0.01 1.74 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -67.11 309.11 5.64 -61.47 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.98 Total: 22.69 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 4.01 Total: -21.07 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -1.34 Total: -71.73 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.04 Total: -36.74 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -67.11 5.64 -61.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080213669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.031 kcal (2) G-P(sol) polarization free energy of solvation -67.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds