Wall clock time and date at job start Mon Mar 30 2020 06:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47433 * 2 1 4 4 N 1.46495 * 109.46893 * 120.00565 * 2 1 3 5 5 C 1.37101 * 120.00470 * 118.64805 * 4 2 1 6 6 H 1.08000 * 120.00635 * 219.07652 * 5 4 2 7 7 C 1.38948 * 119.99914 * 39.07384 * 5 4 2 8 8 N 1.31421 * 120.00157 * 21.15913 * 7 5 4 9 9 Si 1.86798 * 120.00260 * 201.16431 * 7 5 4 10 10 H 1.48496 * 109.47385 * 89.99637 * 9 7 5 11 11 H 1.48505 * 109.47297 * 209.99805 * 9 7 5 12 12 H 1.48503 * 109.47018 * 329.99466 * 9 7 5 13 13 C 1.34779 * 120.00411 * 298.64092 * 4 2 1 14 14 O 1.21297 * 119.99119 * 3.21172 * 13 4 2 15 15 C 1.50695 * 120.00687 * 183.20670 * 13 4 2 16 16 C 1.50466 * 109.62749 * 95.21866 * 15 13 4 17 17 C 1.54065 * 112.49966 * 213.85709 * 16 15 13 18 18 C 1.54069 * 112.81934 * 318.28508 * 17 16 15 19 19 C 1.50468 * 112.49525 * 318.28172 * 18 17 16 20 20 C 1.54244 * 108.51432 * 94.15672 * 19 18 17 21 21 C 1.45549 * 112.40815 * 280.00025 * 20 19 18 22 22 H 1.08999 * 109.46476 * 305.24516 * 1 2 3 23 23 H 1.09000 * 109.46584 * 65.24361 * 1 2 3 24 24 H 1.08992 * 109.47508 * 185.24663 * 1 2 3 25 25 H 1.09005 * 109.46974 * 239.99957 * 2 1 3 26 26 H 1.09006 * 109.46783 * 171.05905 * 3 2 1 27 27 H 1.08993 * 109.47482 * 291.05976 * 3 2 1 28 28 H 1.08998 * 109.47181 * 51.06544 * 3 2 1 29 29 H 0.96998 * 120.00059 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.62230 * 334.63806 * 15 13 4 31 31 H 1.08999 * 108.87710 * 334.63770 * 16 15 13 32 32 H 1.09002 * 108.87363 * 93.17978 * 16 15 13 33 33 H 1.09008 * 108.81561 * 197.42178 * 17 16 15 34 34 H 1.09002 * 108.81551 * 79.14571 * 17 16 15 35 35 H 1.09003 * 108.87835 * 197.50821 * 18 17 16 36 36 H 1.08997 * 108.87447 * 79.06001 * 18 17 16 37 37 H 1.08995 * 109.63147 * 213.86372 * 19 18 17 38 38 H 1.08999 * 109.63145 * 334.25001 * 19 18 17 39 39 H 1.08997 * 108.89324 * 40.74896 * 20 19 18 40 40 H 1.08996 * 108.89552 * 159.24549 * 20 19 18 41 41 H 1.08995 * 108.89695 * 182.68894 * 21 20 19 42 42 H 1.08998 * 108.89422 * 301.28378 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.7835 -1.8214 1.0705 6 1 2.6426 -2.6473 1.7519 7 6 3.7403 -1.9047 0.0664 8 7 4.2109 -0.8088 -0.4855 9 14 4.3578 -3.5745 -0.4992 10 1 3.5064 -4.0662 -1.6121 11 1 5.7616 -3.4506 -0.9673 12 1 4.2963 -4.5343 0.6324 13 6 1.7155 -0.2147 2.4201 14 8 0.9908 0.7515 2.5327 15 6 2.2771 -0.8826 3.6487 16 6 3.5296 -0.1709 4.0830 17 6 4.5695 -1.1285 4.6955 18 6 3.9382 -2.1763 5.6322 19 6 2.8714 -1.5896 6.5164 20 6 1.5030 -1.7941 5.8347 21 6 1.2480 -0.8077 4.7952 22 1 -0.3632 0.5931 0.8393 23 1 -0.3632 0.4304 -0.9332 24 1 -0.3634 -1.0233 0.0940 25 1 1.8934 -0.5139 -0.8900 26 1 3.1184 1.4465 0.1597 27 1 1.8131 1.9081 -0.9589 28 1 1.5524 2.0003 0.7994 29 1 4.8786 -0.8670 -1.1867 30 1 2.5032 -1.9257 3.4272 31 1 3.9720 0.3238 3.2183 32 1 3.2673 0.5837 4.8245 33 1 5.2958 -0.5441 5.2606 34 1 5.0891 -1.6458 3.8890 35 1 4.7198 -2.6050 6.2596 36 1 3.4986 -2.9699 5.0282 37 1 2.8782 -2.0941 7.4826 38 1 3.0577 -0.5250 6.6580 39 1 1.4749 -2.7894 5.3912 40 1 0.7190 -1.7233 6.5885 41 1 0.2515 -0.9750 4.3867 42 1 1.2855 0.1881 5.2368 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083807868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:28 Heat of formation + Delta-G solvation = -60.967036 kcal Electronic energy + Delta-G solvation = -20661.440009 eV Core-core repulsion = 17833.463314 eV Total energy + Delta-G solvation = -2827.976695 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 4.75 seconds Orbital eigenvalues (eV) -39.42698 -37.52950 -34.88635 -32.48598 -31.97126 -31.58759 -30.20247 -26.04217 -25.08150 -24.43699 -24.07761 -21.45677 -19.81208 -19.02846 -18.64329 -16.88455 -15.53836 -14.91272 -14.56034 -14.42087 -14.28150 -13.97328 -13.33611 -13.19657 -12.77674 -12.55888 -12.43507 -12.10063 -11.86580 -11.65445 -11.42631 -11.16539 -11.07836 -10.93625 -10.67330 -10.55295 -10.31394 -10.24737 -10.19942 -10.02708 -9.96878 -9.82901 -9.67447 -9.54672 -8.87411 -8.01602 -7.41267 -6.34476 -3.99827 3.13272 3.23360 3.24228 4.02858 4.15855 4.77526 4.98085 5.06592 5.21849 5.26970 5.64354 5.66998 5.74535 5.82883 5.96563 5.99467 6.06515 6.17461 6.29746 6.37098 6.41792 6.45963 6.49378 6.53315 6.57925 6.62168 6.67928 6.78555 6.81165 6.84365 6.94688 6.96726 7.00769 7.03684 7.10635 7.43513 7.47877 7.58840 8.05242 8.46739 9.16052 9.66092 10.07922 10.70259 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.009778 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.620121 B = 2862.980734 C = 3826.209431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.161 3.839 3 C -0.148 4.148 4 N -0.436 5.436 5 C -0.342 4.342 6 H 0.087 0.913 7 C 0.049 3.951 8 N -0.853 5.853 9 Si 0.905 3.095 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.480 3.520 14 O -0.604 6.604 15 C -0.086 4.086 16 C -0.091 4.091 17 C -0.112 4.112 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.113 4.113 21 C -0.099 4.099 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.056 0.944 29 H 0.267 0.733 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 -2.396 7.123 7.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.057 3.943 3 C -0.206 4.206 4 N -0.155 5.155 5 C -0.470 4.470 6 H 0.104 0.896 7 C -0.158 4.158 8 N -0.488 5.488 9 Si 0.732 3.268 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.269 3.731 14 O -0.490 6.490 15 C -0.107 4.107 16 C -0.129 4.129 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.137 4.137 22 H 0.088 0.912 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.769 -1.865 6.975 7.261 hybrid contribution 0.534 -0.959 -0.588 1.245 sum -0.235 -2.824 6.387 6.987 Atomic orbital electron populations 1.22242 0.97834 1.01027 1.01227 1.20611 0.90900 0.93034 0.89778 1.21976 1.02659 0.96484 0.99508 1.43562 1.44728 1.24291 1.02898 1.19314 1.15746 0.93644 1.18248 0.89579 1.25332 0.94888 0.97538 0.98039 1.70027 1.26528 1.27132 1.25144 0.86282 0.77894 0.83183 0.79419 1.20399 1.21077 1.19386 1.20414 0.83285 0.84253 0.85147 1.90451 1.41861 1.29570 1.87126 1.20787 0.95179 1.01732 0.93000 1.21017 0.94558 0.97414 0.99914 1.21862 0.97712 0.97051 0.98312 1.21337 0.97828 0.98771 0.97609 1.21332 0.95014 1.01316 0.97668 1.20501 0.96754 0.99943 0.97872 1.20285 0.98934 0.99296 0.95220 0.91175 0.93889 0.93819 0.90006 0.91343 0.94784 0.92529 0.92297 0.89001 0.91686 0.92979 0.93115 0.91790 0.93105 0.91963 0.92764 0.91743 0.92392 0.92942 0.92540 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 9.05 37.16 0.34 -3.20 16 2 C 0.16 3.84 2.32 -67.93 -0.16 3.68 16 3 C -0.15 -3.45 8.84 37.16 0.33 -3.12 16 4 N -0.44 -10.80 2.46 -107.73 -0.26 -11.07 16 5 C -0.34 -8.50 8.45 -14.93 -0.13 -8.63 16 6 H 0.09 2.09 6.52 -52.49 -0.34 1.74 16 7 C 0.05 1.21 4.71 -17.46 -0.08 1.13 16 8 N -0.85 -22.03 11.40 55.50 0.63 -21.40 16 9 Si 0.91 19.29 29.60 -169.99 -5.03 14.26 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 13 C 0.48 11.48 5.70 -10.99 -0.06 11.42 16 14 O -0.60 -15.45 12.83 5.54 0.07 -15.38 16 15 C -0.09 -1.72 1.72 -92.39 -0.16 -1.88 16 16 C -0.09 -1.71 4.88 -27.44 -0.13 -1.84 16 17 C -0.11 -1.78 5.86 -25.62 -0.15 -1.93 16 18 C -0.12 -1.65 5.31 -27.44 -0.15 -1.80 16 19 C -0.12 -1.53 5.60 -27.35 -0.15 -1.68 16 20 C -0.11 -1.62 5.26 -29.59 -0.16 -1.77 16 21 C -0.10 -1.74 4.22 -29.59 -0.12 -1.87 16 22 H 0.07 1.59 6.30 -51.93 -0.33 1.26 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.08 2.07 6.56 -51.93 -0.34 1.73 16 26 H 0.07 1.73 7.51 -51.93 -0.39 1.34 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.35 6.44 -51.93 -0.33 1.02 16 29 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 30 H 0.09 1.88 4.92 -51.93 -0.26 1.63 16 31 H 0.06 1.42 7.70 -51.93 -0.40 1.02 16 32 H 0.05 0.93 6.63 -51.93 -0.34 0.58 16 33 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.92 6.64 -51.93 -0.34 0.57 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.87 6.99 -51.93 -0.36 0.51 16 39 H 0.06 0.83 7.47 -51.93 -0.39 0.44 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 1.05 7.95 -51.93 -0.41 0.64 16 42 H 0.06 1.06 7.47 -51.93 -0.39 0.67 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -26.88 312.06 -7.82 -34.71 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.15 Total: 5.66 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -0.79 Total: -11.49 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.37 Total: -32.46 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.07 Total: -15.38 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.88 -7.82 -34.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083807868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.262 kcal (2) G-P(sol) polarization free energy of solvation -26.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.75 seconds