Wall clock time and date at job start Mon Mar 30 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47433 * 2 1 4 4 N 1.46495 * 109.46893 * 120.00565 * 2 1 3 5 5 C 1.37101 * 120.00470 * 118.64805 * 4 2 1 6 6 H 1.08000 * 120.00635 * 219.07652 * 5 4 2 7 7 C 1.38948 * 119.99914 * 39.07384 * 5 4 2 8 8 N 1.31421 * 120.00157 * 21.15913 * 7 5 4 9 9 Si 1.86798 * 120.00260 * 201.16431 * 7 5 4 10 10 H 1.48496 * 109.47385 * 89.99637 * 9 7 5 11 11 H 1.48505 * 109.47297 * 209.99805 * 9 7 5 12 12 H 1.48503 * 109.47018 * 329.99466 * 9 7 5 13 13 C 1.34779 * 120.00411 * 298.64092 * 4 2 1 14 14 O 1.21297 * 119.99119 * 3.21172 * 13 4 2 15 15 C 1.50695 * 120.00687 * 183.20670 * 13 4 2 16 16 C 1.50466 * 109.62749 * 95.21866 * 15 13 4 17 17 C 1.54065 * 112.49966 * 213.85709 * 16 15 13 18 18 C 1.54069 * 112.81934 * 318.28508 * 17 16 15 19 19 C 1.50468 * 112.49525 * 318.28172 * 18 17 16 20 20 C 1.54244 * 108.51432 * 94.15672 * 19 18 17 21 21 C 1.45549 * 112.40815 * 280.00025 * 20 19 18 22 22 H 1.08999 * 109.46476 * 305.24516 * 1 2 3 23 23 H 1.09000 * 109.46584 * 65.24361 * 1 2 3 24 24 H 1.08992 * 109.47508 * 185.24663 * 1 2 3 25 25 H 1.09005 * 109.46974 * 239.99957 * 2 1 3 26 26 H 1.09006 * 109.46783 * 171.05905 * 3 2 1 27 27 H 1.08993 * 109.47482 * 291.05976 * 3 2 1 28 28 H 1.08998 * 109.47181 * 51.06544 * 3 2 1 29 29 H 0.96998 * 120.00059 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.62230 * 334.63806 * 15 13 4 31 31 H 1.08999 * 108.87710 * 334.63770 * 16 15 13 32 32 H 1.09002 * 108.87363 * 93.17978 * 16 15 13 33 33 H 1.09008 * 108.81561 * 197.42178 * 17 16 15 34 34 H 1.09002 * 108.81551 * 79.14571 * 17 16 15 35 35 H 1.09003 * 108.87835 * 197.50821 * 18 17 16 36 36 H 1.08997 * 108.87447 * 79.06001 * 18 17 16 37 37 H 1.08995 * 109.63147 * 213.86372 * 19 18 17 38 38 H 1.08999 * 109.63145 * 334.25001 * 19 18 17 39 39 H 1.08997 * 108.89324 * 40.74896 * 20 19 18 40 40 H 1.08996 * 108.89552 * 159.24549 * 20 19 18 41 41 H 1.08995 * 108.89695 * 182.68894 * 21 20 19 42 42 H 1.08998 * 108.89422 * 301.28378 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.7835 -1.8214 1.0705 6 1 2.6426 -2.6473 1.7519 7 6 3.7403 -1.9047 0.0664 8 7 4.2109 -0.8088 -0.4855 9 14 4.3578 -3.5745 -0.4992 10 1 3.5064 -4.0662 -1.6121 11 1 5.7616 -3.4506 -0.9673 12 1 4.2963 -4.5343 0.6324 13 6 1.7155 -0.2147 2.4201 14 8 0.9908 0.7515 2.5327 15 6 2.2771 -0.8826 3.6487 16 6 3.5296 -0.1709 4.0830 17 6 4.5695 -1.1285 4.6955 18 6 3.9382 -2.1763 5.6322 19 6 2.8714 -1.5896 6.5164 20 6 1.5030 -1.7941 5.8347 21 6 1.2480 -0.8077 4.7952 22 1 -0.3632 0.5931 0.8393 23 1 -0.3632 0.4304 -0.9332 24 1 -0.3634 -1.0233 0.0940 25 1 1.8934 -0.5139 -0.8900 26 1 3.1184 1.4465 0.1597 27 1 1.8131 1.9081 -0.9589 28 1 1.5524 2.0003 0.7994 29 1 4.8786 -0.8670 -1.1867 30 1 2.5032 -1.9257 3.4272 31 1 3.9720 0.3238 3.2183 32 1 3.2673 0.5837 4.8245 33 1 5.2958 -0.5441 5.2606 34 1 5.0891 -1.6458 3.8890 35 1 4.7198 -2.6050 6.2596 36 1 3.4986 -2.9699 5.0282 37 1 2.8782 -2.0941 7.4826 38 1 3.0577 -0.5250 6.6580 39 1 1.4749 -2.7894 5.3912 40 1 0.7190 -1.7233 6.5885 41 1 0.2515 -0.9750 4.3867 42 1 1.2855 0.1881 5.2368 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083807868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:25 Heat of formation + Delta-G solvation = -73.677654 kcal Electronic energy + Delta-G solvation = -20661.991183 eV Core-core repulsion = 17833.463314 eV Total energy + Delta-G solvation = -2828.527869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.13680 -39.04454 -36.78166 -34.29383 -33.33309 -33.19706 -31.93448 -27.88665 -26.81288 -26.08886 -25.38522 -23.14350 -21.19338 -20.76219 -20.24275 -18.60874 -17.43106 -16.43321 -16.30884 -16.00218 -15.92504 -15.31745 -15.01627 -14.71261 -14.35449 -14.21245 -13.97087 -13.82766 -13.59148 -13.08118 -12.96976 -12.90089 -12.81893 -12.61501 -12.40864 -12.18510 -12.03614 -11.90747 -11.65396 -11.47846 -11.39746 -11.26122 -11.12221 -10.94689 -10.78343 -9.90162 -9.35562 -8.25352 -5.96865 1.42967 1.48497 1.57112 2.16791 2.35579 3.02322 3.11329 3.79542 3.88525 4.05427 4.23570 4.32206 4.39832 4.41881 4.48121 4.51816 4.55507 4.65156 4.71983 4.80979 4.83877 4.98752 5.02477 5.08518 5.12771 5.16496 5.17500 5.25458 5.34055 5.40391 5.44167 5.45574 5.50903 5.51659 5.53446 5.61677 5.65569 5.66814 6.14446 6.53170 7.22486 7.74954 8.16860 8.79627 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.009778 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.620121 B = 2862.980734 C = 3826.209431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.153 3.847 3 C -0.133 4.133 4 N -0.448 5.448 5 C -0.355 4.355 6 H 0.090 0.910 7 C 0.012 3.988 8 N -0.881 5.881 9 Si 0.970 3.030 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.259 1.259 13 C 0.466 3.534 14 O -0.627 6.627 15 C -0.081 4.081 16 C -0.084 4.084 17 C -0.107 4.107 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.113 4.113 21 C -0.088 4.088 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.268 0.732 30 H 0.086 0.914 31 H 0.024 0.976 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 -3.833 8.417 9.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.049 3.951 3 C -0.191 4.191 4 N -0.166 5.166 5 C -0.483 4.483 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.517 5.517 9 Si 0.794 3.206 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.182 1.182 13 C 0.257 3.743 14 O -0.515 6.515 15 C -0.102 4.102 16 C -0.122 4.122 17 C -0.145 4.145 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.150 4.150 21 C -0.127 4.127 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.645 -3.310 8.277 8.938 hybrid contribution 0.486 -0.431 -1.024 1.213 sum -0.158 -3.741 7.254 8.163 Atomic orbital electron populations 1.22104 0.95864 1.01020 1.02078 1.20684 0.92460 0.92814 0.89101 1.21808 1.00557 0.96471 1.00307 1.43791 1.44841 1.24491 1.03472 1.19546 1.16130 0.93794 1.18790 0.89253 1.26075 0.94834 1.00623 0.97766 1.70133 1.27075 1.29005 1.25527 0.85285 0.77002 0.79249 0.79029 1.20269 1.21180 1.18244 1.21136 0.82880 0.84211 0.86098 1.90420 1.42841 1.30618 1.87603 1.20785 0.96284 1.00836 0.92297 1.20956 0.94556 0.98115 0.98597 1.21823 0.97077 0.97150 0.98415 1.21330 0.98786 0.97667 0.97450 1.21324 0.93536 1.01508 0.98535 1.20486 0.98493 0.98679 0.97357 1.20231 0.97122 1.00251 0.95046 0.92625 0.91078 0.93755 0.91596 0.94006 0.92406 0.93669 0.92286 0.89557 0.95752 0.92146 0.91212 0.93527 0.90615 0.92833 0.89888 0.91970 0.92238 0.90762 0.94146 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.51 9.05 71.98 0.65 -5.85 16 2 C 0.15 7.44 2.32 44.99 0.10 7.54 16 3 C -0.13 -6.33 8.84 71.98 0.64 -5.70 16 4 N -0.45 -22.69 2.46 -613.13 -1.51 -24.20 16 5 C -0.35 -17.90 8.45 84.04 0.71 -17.19 16 6 H 0.09 4.36 6.52 -2.91 -0.02 4.34 16 7 C 0.01 0.57 4.71 84.92 0.40 0.97 16 8 N -0.88 -46.36 11.40 21.66 0.25 -46.11 16 9 Si 0.97 39.40 29.60 68.60 2.03 41.43 16 10 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 11 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 13 C 0.47 22.90 5.70 87.65 0.50 23.40 16 14 O -0.63 -32.95 12.83 -3.08 -0.04 -32.99 16 15 C -0.08 -3.28 1.72 -11.94 -0.02 -3.30 16 16 C -0.08 -3.19 4.88 30.13 0.15 -3.04 16 17 C -0.11 -3.29 5.86 31.32 0.18 -3.11 16 18 C -0.11 -2.90 5.31 30.14 0.16 -2.74 16 19 C -0.11 -2.56 5.60 30.20 0.17 -2.40 16 20 C -0.11 -2.95 5.26 28.74 0.15 -2.80 16 21 C -0.09 -3.04 4.22 28.74 0.12 -2.92 16 22 H 0.05 2.53 6.30 -2.39 -0.02 2.51 16 23 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 24 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.07 3.39 6.56 -2.38 -0.02 3.37 16 26 H 0.04 2.17 7.51 -2.38 -0.02 2.15 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.04 2.21 6.44 -2.39 -0.02 2.19 16 29 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 30 H 0.09 3.56 4.92 -2.39 -0.01 3.55 16 31 H 0.02 1.09 7.70 -2.39 -0.02 1.07 16 32 H 0.06 2.15 6.63 -2.39 -0.02 2.13 16 33 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 1.45 6.64 -2.39 -0.02 1.44 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.48 6.99 -2.39 -0.02 1.47 16 39 H 0.06 1.56 7.47 -2.39 -0.02 1.54 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.04 1.49 7.95 -2.39 -0.02 1.47 16 42 H 0.05 1.90 7.47 -2.39 -0.02 1.88 16 Total: -1.00 -58.67 312.06 5.62 -53.05 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.98 Total: 25.95 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 3.91 Total: -17.13 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -1.26 Total: -70.31 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.04 Total: -32.99 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -58.67 5.62 -53.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083807868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.631 kcal (2) G-P(sol) polarization free energy of solvation -58.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds