Wall clock time and date at job start Mon Mar 30 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46867 * 2 1 4 4 N 1.46500 * 109.46639 * 180.02562 * 3 2 1 5 5 C 1.36942 * 120.00383 * 85.04603 * 4 3 2 6 6 H 1.07995 * 120.00070 * 209.62717 * 5 4 3 7 7 C 1.38817 * 119.99527 * 29.61589 * 5 4 3 8 8 N 1.31618 * 119.99978 * 40.74498 * 7 5 4 9 9 Si 1.86796 * 119.99823 * 220.73539 * 7 5 4 10 10 H 1.48500 * 109.46841 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47570 * 300.00581 * 9 7 5 12 12 H 1.48508 * 109.47001 * 60.00594 * 9 7 5 13 13 C 1.46507 * 120.00245 * 265.04164 * 4 3 2 14 14 H 1.08999 * 109.55225 * 359.79291 * 13 4 3 15 15 C 1.53159 * 109.55572 * 239.49109 * 13 4 3 16 16 C 1.53045 * 109.40965 * 181.52354 * 15 13 4 17 17 O 1.43044 * 109.44155 * 59.32645 * 16 15 13 18 18 C 1.42584 * 113.84566 * 301.26647 * 17 16 15 19 19 C 1.53389 * 113.62705 * 188.22316 * 18 17 16 20 20 C 1.53853 * 86.98193 * 89.43836 * 19 18 17 21 21 C 1.53428 * 113.57043 * 286.15257 * 18 17 16 22 22 C 1.52813 * 112.93546 * 57.11341 * 18 17 16 23 23 H 1.09002 * 109.47298 * 300.00043 * 1 2 3 24 24 H 1.08999 * 109.47189 * 59.99798 * 1 2 3 25 25 H 1.08997 * 109.47523 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46814 * 240.00155 * 2 1 3 27 27 H 1.08999 * 109.47189 * 120.00202 * 2 1 3 28 28 H 1.08995 * 109.47494 * 60.00485 * 3 2 1 29 29 H 1.09004 * 109.47350 * 299.99582 * 3 2 1 30 30 H 0.97003 * 120.00127 * 5.82999 * 8 7 5 31 31 H 1.09002 * 109.47887 * 301.50357 * 15 13 4 32 32 H 1.08994 * 109.48343 * 61.53706 * 15 13 4 33 33 H 1.09001 * 109.47630 * 299.33190 * 16 15 13 34 34 H 1.08999 * 109.48009 * 179.32063 * 16 15 13 35 35 H 1.08995 * 113.63301 * 203.96665 * 19 18 17 36 36 H 1.09000 * 113.62764 * 334.92049 * 19 18 17 37 37 H 1.08994 * 113.60934 * 270.60417 * 20 19 18 38 38 H 1.09004 * 113.67587 * 139.73765 * 20 19 18 39 39 H 1.09001 * 113.62977 * 25.02748 * 21 18 17 40 40 H 1.08999 * 113.63118 * 155.90369 * 21 18 17 41 41 H 1.09001 * 109.56639 * 186.21508 * 22 18 17 42 42 H 1.09002 * 109.65929 * 65.93156 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.1892 1.3402 -1.1824 6 1 5.1632 0.8742 -1.2038 7 6 3.6306 1.8353 -2.3528 8 7 2.9855 2.9824 -2.3402 9 14 3.7949 0.8735 -3.9457 10 1 3.1174 1.6117 -5.0417 11 1 5.2328 0.7063 -4.2771 12 1 3.1655 -0.4620 -3.7848 13 6 4.2380 1.5519 1.2631 14 1 3.5313 1.6272 2.0895 15 6 5.1289 2.7973 1.2327 16 6 5.9215 2.8877 2.5388 17 8 6.7243 1.7135 2.6908 18 6 5.9747 0.5008 2.7064 19 6 6.8103 -0.7338 3.0677 20 6 6.4573 -0.4423 4.5365 21 6 5.2011 0.2745 4.0120 22 6 5.1203 0.3126 1.4536 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 2.9722 3.5226 -1.5347 31 1 5.8197 2.7297 0.3923 32 1 4.5077 3.6861 1.1222 33 1 5.2308 2.9668 3.3784 34 1 6.5650 3.7671 2.5135 35 1 6.3921 -1.6688 2.6951 36 1 7.8713 -0.6241 2.8433 37 1 7.1646 0.2230 5.0317 38 1 6.2380 -1.3366 5.1198 39 1 4.9680 1.1952 4.5468 40 1 4.3373 -0.3807 3.9000 41 1 4.4905 -0.5694 1.5703 42 1 5.7662 0.1873 0.5846 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094375448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:43 Heat of formation + Delta-G solvation = -18.563063 kcal Electronic energy + Delta-G solvation = -20356.053375 eV Core-core repulsion = 17529.915454 eV Total energy + Delta-G solvation = -2826.137921 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.13316 -36.74945 -35.56310 -33.04732 -32.16208 -29.60274 -28.97240 -25.65999 -25.41485 -24.33571 -22.79668 -22.14777 -20.34259 -19.70257 -18.69058 -16.90137 -15.85153 -15.71959 -14.91286 -14.55170 -14.20015 -14.02729 -13.61590 -13.51319 -13.17679 -13.01680 -12.59630 -12.26859 -12.13536 -11.95486 -11.18654 -11.14945 -11.00244 -10.80460 -10.68479 -10.64009 -10.57775 -10.35918 -10.28646 -10.02457 -9.92992 -9.89532 -9.51211 -9.26776 -8.88573 -8.15574 -6.82334 -6.10692 -3.16105 3.51469 3.56774 3.73406 3.99028 4.60484 4.76086 4.82196 4.98123 5.12406 5.20885 5.32146 5.53516 5.65298 5.69688 5.77471 5.81876 5.85384 5.86151 5.89880 5.99041 6.01318 6.02136 6.16632 6.26042 6.27135 6.33483 6.35718 6.44317 6.54378 6.65295 6.74589 6.76744 6.77477 7.03732 7.14658 7.18454 7.36776 7.68325 8.17382 8.59652 9.15291 9.88949 10.35422 11.10678 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.007321 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.288967 B = 3823.608864 C = 4249.772721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C 0.142 3.858 4 N -0.587 5.587 5 C -0.360 4.360 6 H 0.053 0.947 7 C -0.009 4.009 8 N -0.884 5.884 9 Si 1.038 2.962 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.294 1.294 13 C 0.179 3.821 14 H 0.045 0.955 15 C -0.157 4.157 16 C 0.064 3.936 17 O -0.363 6.363 18 C 0.098 3.902 19 C -0.126 4.126 20 C -0.135 4.135 21 C -0.164 4.164 22 C -0.136 4.136 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.024 0.976 29 H 0.071 0.929 30 H 0.269 0.731 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 -4.592 11.082 12.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.016 3.984 4 N -0.307 5.307 5 C -0.488 4.488 6 H 0.071 0.929 7 C -0.214 4.214 8 N -0.520 5.520 9 Si 0.868 3.132 10 H -0.213 1.213 11 H -0.220 1.220 12 H -0.221 1.221 13 C 0.072 3.928 14 H 0.063 0.937 15 C -0.197 4.197 16 C -0.013 4.013 17 O -0.282 6.282 18 C 0.058 3.942 19 C -0.164 4.164 20 C -0.172 4.172 21 C -0.202 4.202 22 C -0.175 4.175 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.760 -4.589 9.471 10.670 hybrid contribution 0.206 0.024 1.515 1.529 sum 1.965 -4.564 10.986 12.057 Atomic orbital electron populations 1.21724 0.97534 1.00188 1.01018 1.22003 0.93509 1.00936 1.01083 1.20931 0.83913 0.93643 0.99909 1.44045 1.00222 1.84832 1.01579 1.19565 1.05364 1.37898 0.86008 0.92907 1.25548 0.99687 0.95528 1.00621 1.70800 1.44317 1.07085 1.29827 0.83926 0.75997 0.76423 0.76876 1.21349 1.21974 1.22098 1.20329 0.91866 0.91563 0.89080 0.93714 1.22560 0.99790 1.00172 0.97162 1.22599 0.94359 0.87183 0.97112 1.87805 1.33324 1.13449 1.93621 1.22228 0.92316 0.85606 0.94064 1.22943 1.00760 0.96767 0.95911 1.22785 0.98008 1.00113 0.96321 1.23475 0.97544 1.00944 0.98207 1.22409 0.98574 1.00018 0.96540 0.93774 0.92981 0.93935 0.91984 0.93933 0.95715 0.91144 0.92136 0.90511 0.92006 0.94088 0.89747 0.89115 0.90911 0.90220 0.91857 0.91511 0.89625 0.91930 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 37.16 0.37 -2.09 16 2 C -0.14 -2.71 6.23 -26.73 -0.17 -2.88 16 3 C 0.14 3.21 5.18 -4.04 -0.02 3.19 16 4 N -0.59 -13.94 2.31 -165.38 -0.38 -14.32 16 5 C -0.36 -9.61 7.97 -15.05 -0.12 -9.73 16 6 H 0.05 1.48 6.87 -52.49 -0.36 1.12 16 7 C -0.01 -0.24 4.52 -17.43 -0.08 -0.31 16 8 N -0.88 -25.59 12.21 55.49 0.68 -24.91 16 9 Si 1.04 24.97 30.05 -169.99 -5.11 19.86 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.18 3.66 2.65 -67.68 -0.18 3.48 16 14 H 0.04 0.88 7.70 -51.93 -0.40 0.48 16 15 C -0.16 -3.12 5.35 -26.63 -0.14 -3.26 16 16 C 0.06 1.06 6.73 37.18 0.25 1.31 16 17 O -0.36 -6.38 10.45 -35.23 -0.37 -6.75 16 18 C 0.10 1.59 1.03 -90.29 -0.09 1.50 16 19 C -0.13 -1.74 7.47 -26.09 -0.19 -1.94 16 20 C -0.13 -1.66 8.02 -25.85 -0.21 -1.86 16 21 C -0.16 -2.27 7.11 -26.07 -0.19 -2.45 16 22 C -0.14 -2.56 4.60 -26.67 -0.12 -2.68 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.02 0.52 7.82 -51.93 -0.41 0.11 16 29 H 0.07 1.81 5.69 -51.93 -0.30 1.51 16 30 H 0.27 7.87 8.11 -40.82 -0.33 7.54 16 31 H 0.08 1.74 7.61 -51.93 -0.40 1.35 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.04 0.62 7.21 -51.93 -0.37 0.25 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.16 8.09 -51.93 -0.42 0.74 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.91 7.26 -51.93 -0.38 0.53 16 40 H 0.09 1.14 8.02 -51.93 -0.42 0.72 16 41 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 42 H 0.07 1.59 6.79 -51.93 -0.35 1.24 16 LS Contribution 323.74 15.07 4.88 4.88 Total: -1.00 -28.15 323.74 -8.76 -36.92 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.57 Total: 2.05 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -0.89 Total: -17.73 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.30 Total: -39.23 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.37 Total: -6.75 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.11 Total: 19.86 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.15 -8.76 -36.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.356 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds