Wall clock time and date at job start Mon Mar 30 2020 06:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46867 * 2 1 4 4 N 1.46500 * 109.46639 * 180.02562 * 3 2 1 5 5 C 1.36942 * 120.00383 * 85.04603 * 4 3 2 6 6 H 1.07995 * 120.00070 * 209.62717 * 5 4 3 7 7 C 1.38817 * 119.99527 * 29.61589 * 5 4 3 8 8 N 1.31618 * 119.99978 * 40.74498 * 7 5 4 9 9 Si 1.86796 * 119.99823 * 220.73539 * 7 5 4 10 10 H 1.48500 * 109.46841 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47570 * 300.00581 * 9 7 5 12 12 H 1.48508 * 109.47001 * 60.00594 * 9 7 5 13 13 C 1.46507 * 120.00245 * 265.04164 * 4 3 2 14 14 H 1.08999 * 109.55225 * 359.79291 * 13 4 3 15 15 C 1.53159 * 109.55572 * 239.49109 * 13 4 3 16 16 C 1.53045 * 109.40965 * 181.52354 * 15 13 4 17 17 O 1.43044 * 109.44155 * 59.32645 * 16 15 13 18 18 C 1.42584 * 113.84566 * 301.26647 * 17 16 15 19 19 C 1.53389 * 113.62705 * 188.22316 * 18 17 16 20 20 C 1.53853 * 86.98193 * 89.43836 * 19 18 17 21 21 C 1.53428 * 113.57043 * 286.15257 * 18 17 16 22 22 C 1.52813 * 112.93546 * 57.11341 * 18 17 16 23 23 H 1.09002 * 109.47298 * 300.00043 * 1 2 3 24 24 H 1.08999 * 109.47189 * 59.99798 * 1 2 3 25 25 H 1.08997 * 109.47523 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46814 * 240.00155 * 2 1 3 27 27 H 1.08999 * 109.47189 * 120.00202 * 2 1 3 28 28 H 1.08995 * 109.47494 * 60.00485 * 3 2 1 29 29 H 1.09004 * 109.47350 * 299.99582 * 3 2 1 30 30 H 0.97003 * 120.00127 * 5.82999 * 8 7 5 31 31 H 1.09002 * 109.47887 * 301.50357 * 15 13 4 32 32 H 1.08994 * 109.48343 * 61.53706 * 15 13 4 33 33 H 1.09001 * 109.47630 * 299.33190 * 16 15 13 34 34 H 1.08999 * 109.48009 * 179.32063 * 16 15 13 35 35 H 1.08995 * 113.63301 * 203.96665 * 19 18 17 36 36 H 1.09000 * 113.62764 * 334.92049 * 19 18 17 37 37 H 1.08994 * 113.60934 * 270.60417 * 20 19 18 38 38 H 1.09004 * 113.67587 * 139.73765 * 20 19 18 39 39 H 1.09001 * 113.62977 * 25.02748 * 21 18 17 40 40 H 1.08999 * 113.63118 * 155.90369 * 21 18 17 41 41 H 1.09001 * 109.56639 * 186.21508 * 22 18 17 42 42 H 1.09002 * 109.65929 * 65.93156 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.1892 1.3402 -1.1824 6 1 5.1632 0.8742 -1.2038 7 6 3.6306 1.8353 -2.3528 8 7 2.9855 2.9824 -2.3402 9 14 3.7949 0.8735 -3.9457 10 1 3.1174 1.6117 -5.0417 11 1 5.2328 0.7063 -4.2771 12 1 3.1655 -0.4620 -3.7848 13 6 4.2380 1.5519 1.2631 14 1 3.5313 1.6272 2.0895 15 6 5.1289 2.7973 1.2327 16 6 5.9215 2.8877 2.5388 17 8 6.7243 1.7135 2.6908 18 6 5.9747 0.5008 2.7064 19 6 6.8103 -0.7338 3.0677 20 6 6.4573 -0.4423 4.5365 21 6 5.2011 0.2745 4.0120 22 6 5.1203 0.3126 1.4536 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 2.9722 3.5226 -1.5347 31 1 5.8197 2.7297 0.3923 32 1 4.5077 3.6861 1.1222 33 1 5.2308 2.9668 3.3784 34 1 6.5650 3.7671 2.5135 35 1 6.3921 -1.6688 2.6951 36 1 7.8713 -0.6241 2.8433 37 1 7.1646 0.2230 5.0317 38 1 6.2380 -1.3366 5.1198 39 1 4.9680 1.1952 4.5468 40 1 4.3373 -0.3807 3.9000 41 1 4.4905 -0.5694 1.5703 42 1 5.7662 0.1873 0.5846 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:42 Heat of formation + Delta-G solvation = -33.252832 kcal Electronic energy + Delta-G solvation = -20356.690371 eV Core-core repulsion = 17529.915454 eV Total energy + Delta-G solvation = -2826.774917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -41.44584 -38.43598 -36.91681 -34.61621 -34.10463 -31.29897 -30.43890 -27.28928 -26.69565 -25.98695 -24.16405 -23.70760 -21.92916 -21.42405 -19.99084 -18.83300 -17.29721 -17.00770 -16.55750 -16.13688 -15.59150 -15.54684 -15.41057 -15.01217 -14.77081 -14.51604 -14.06998 -13.83131 -13.67589 -13.25248 -12.79655 -12.57299 -12.52644 -12.46828 -12.32614 -12.20126 -11.96045 -11.86461 -11.72297 -11.71152 -11.60602 -11.44383 -11.31373 -10.76245 -10.33031 -10.15523 -8.83878 -8.22795 -5.27905 1.55187 1.59830 1.79671 2.64019 2.72993 3.08584 3.44213 3.62198 3.72898 3.92085 4.00676 4.04240 4.20529 4.23032 4.32808 4.41115 4.43367 4.50212 4.57342 4.66688 4.71451 4.79503 4.80993 4.84806 4.96876 4.99047 5.02770 5.05801 5.08930 5.17228 5.23422 5.31648 5.40667 5.43864 5.45847 5.51939 5.61249 6.02692 6.36147 6.40955 7.13913 7.87184 8.30792 8.93008 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.007321 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.288967 B = 3823.608864 C = 4249.772721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C 0.142 3.858 4 N -0.600 5.600 5 C -0.350 4.350 6 H 0.033 0.967 7 C -0.055 4.055 8 N -0.908 5.908 9 Si 1.081 2.919 10 H -0.292 1.292 11 H -0.282 1.282 12 H -0.284 1.284 13 C 0.174 3.826 14 H 0.060 0.940 15 C -0.150 4.150 16 C 0.072 3.928 17 O -0.375 6.375 18 C 0.083 3.917 19 C -0.127 4.127 20 C -0.120 4.120 21 C -0.157 4.157 22 C -0.124 4.124 23 H 0.061 0.939 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.034 0.966 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.254 0.746 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 -5.969 13.262 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C 0.016 3.984 4 N -0.321 5.321 5 C -0.479 4.479 6 H 0.051 0.949 7 C -0.256 4.256 8 N -0.547 5.547 9 Si 0.908 3.092 10 H -0.218 1.218 11 H -0.208 1.208 12 H -0.210 1.210 13 C 0.067 3.933 14 H 0.078 0.922 15 C -0.190 4.190 16 C -0.005 4.005 17 O -0.294 6.294 18 C 0.043 3.957 19 C -0.164 4.164 20 C -0.157 4.157 21 C -0.195 4.195 22 C -0.163 4.163 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.084 0.916 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.543 -5.983 11.677 13.211 hybrid contribution 0.296 0.460 0.877 1.034 sum 1.839 -5.523 12.554 13.838 Atomic orbital electron populations 1.21659 0.94730 1.01897 1.01434 1.21847 0.95928 0.98528 1.00220 1.20933 0.83272 0.95222 0.98960 1.44251 1.00933 1.84983 1.01886 1.19533 1.04737 1.36189 0.87435 0.94878 1.26560 1.00051 0.95723 1.03217 1.70913 1.46665 1.08036 1.29091 0.83317 0.76475 0.75538 0.73900 1.21828 1.20845 1.21032 1.20525 0.92241 0.92544 0.87978 0.92202 1.22444 0.99092 0.99461 0.97972 1.22591 0.94688 0.87726 0.95481 1.87803 1.34037 1.14035 1.93515 1.22456 0.93327 0.86148 0.93757 1.23016 1.00249 0.95868 0.97281 1.22722 0.96808 1.00874 0.95308 1.23457 0.98288 1.01578 0.96182 1.22250 0.98047 0.99166 0.96856 0.91967 0.93986 0.91567 0.94753 0.92751 0.94277 0.94433 0.93712 0.94427 0.93150 0.91803 0.87986 0.88168 0.91229 0.89942 0.89402 0.91027 0.88830 0.91539 0.94428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 9.91 71.98 0.71 -3.66 16 2 C -0.13 -4.91 6.23 30.59 0.19 -4.72 16 3 C 0.14 6.45 5.18 86.38 0.45 6.90 16 4 N -0.60 -29.06 2.31 -677.14 -1.57 -30.62 16 5 C -0.35 -19.29 7.97 84.03 0.67 -18.62 16 6 H 0.03 1.95 6.87 -2.91 -0.02 1.93 16 7 C -0.06 -3.12 4.52 84.86 0.38 -2.73 16 8 N -0.91 -54.42 12.21 21.65 0.26 -54.16 16 9 Si 1.08 51.64 30.05 68.60 2.06 53.70 16 10 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 C 0.17 7.09 2.65 45.15 0.12 7.21 16 14 H 0.06 2.26 7.70 -2.39 -0.02 2.25 16 15 C -0.15 -6.06 5.35 30.66 0.16 -5.89 16 16 C 0.07 2.27 6.73 72.00 0.48 2.76 16 17 O -0.37 -12.64 10.45 -148.98 -1.56 -14.20 16 18 C 0.08 2.55 1.03 -10.58 -0.01 2.54 16 19 C -0.13 -3.21 7.47 31.01 0.23 -2.97 16 20 C -0.12 -2.50 8.02 31.17 0.25 -2.25 16 21 C -0.16 -3.82 7.11 31.02 0.22 -3.60 16 22 C -0.12 -4.64 4.60 30.64 0.14 -4.50 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.04 1.63 7.82 -2.39 -0.02 1.61 16 29 H 0.04 1.98 5.69 -2.39 -0.01 1.96 16 30 H 0.25 15.54 8.11 -92.71 -0.75 14.79 16 31 H 0.04 1.78 7.61 -2.39 -0.02 1.76 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.76 7.21 -2.39 -0.02 1.74 16 34 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.10 2.32 8.09 -2.39 -0.02 2.30 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.07 1.68 7.26 -2.39 -0.02 1.67 16 40 H 0.09 2.14 8.02 -2.39 -0.02 2.12 16 41 H 0.07 2.39 8.04 -2.39 -0.02 2.38 16 42 H 0.04 1.66 6.79 -2.39 -0.02 1.64 16 Total: -1.00 -62.61 323.74 4.19 -58.42 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.98 Total: 16.40 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 4.01 Total: -29.53 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -1.30 Total: -84.78 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.56 Total: -14.20 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.06 Total: 53.70 kcal Total: -62.61 4.19 -58.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.167 kcal (2) G-P(sol) polarization free energy of solvation -62.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds