Wall clock time and date at job start Mon Mar 30 2020 06:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47074 * 2 1 4 4 N 1.46505 * 109.47161 * 119.99968 * 2 1 3 5 5 C 1.36931 * 120.00053 * 117.47944 * 4 2 1 6 6 H 1.08002 * 119.99740 * 146.64202 * 5 4 2 7 7 C 1.38807 * 120.00231 * 326.64002 * 5 4 2 8 8 N 1.31615 * 120.00136 * 344.31811 * 7 5 4 9 9 Si 1.86803 * 119.99942 * 164.31257 * 7 5 4 10 10 H 1.48501 * 109.47244 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47086 * 120.00420 * 9 7 5 12 12 H 1.48498 * 109.47247 * 240.00325 * 9 7 5 13 13 C 1.46501 * 119.99659 * 297.48007 * 4 2 1 14 14 H 1.09000 * 109.55590 * 359.79886 * 13 4 2 15 15 C 1.53152 * 109.55619 * 239.48966 * 13 4 2 16 16 C 1.53047 * 109.41289 * 181.52932 * 15 13 4 17 17 O 1.43044 * 109.44131 * 59.32836 * 16 15 13 18 18 C 1.42584 * 113.84893 * 301.27101 * 17 16 15 19 19 C 1.53420 * 113.56166 * 286.13357 * 18 17 16 20 20 C 1.53835 * 86.97531 * 220.04118 * 19 18 17 21 21 C 1.53395 * 113.63028 * 188.21249 * 18 17 16 22 22 C 1.52818 * 112.94049 * 57.10204 * 18 17 16 23 23 H 1.09005 * 109.46860 * 299.99967 * 1 2 3 24 24 H 1.08995 * 109.47143 * 59.99986 * 1 2 3 25 25 H 1.08997 * 109.47181 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46876 * 239.99494 * 2 1 3 27 27 H 1.09001 * 109.46908 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46832 * 299.99624 * 3 2 1 29 29 H 1.08995 * 109.47682 * 59.99988 * 3 2 1 30 30 H 0.96998 * 120.00071 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.48314 * 61.54667 * 15 13 4 32 32 H 1.09001 * 109.48148 * 301.50776 * 15 13 4 33 33 H 1.09001 * 109.47385 * 299.34322 * 16 15 13 34 34 H 1.08997 * 109.47906 * 179.32279 * 16 15 13 35 35 H 1.09003 * 113.63136 * 334.56336 * 19 18 17 36 36 H 1.09001 * 113.63422 * 105.51622 * 19 18 17 37 37 H 1.09004 * 113.60701 * 270.59595 * 20 19 18 38 38 H 1.09002 * 113.68052 * 139.73421 * 20 19 18 39 39 H 1.08997 * 113.62631 * 254.41814 * 21 18 17 40 40 H 1.08996 * 113.62702 * 25.28393 * 21 18 17 41 41 H 1.09000 * 109.55866 * 65.89223 * 22 18 17 42 42 H 1.08997 * 109.56139 * 186.23545 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.7625 -1.8333 1.0713 6 1 3.5417 -2.0512 1.7866 7 6 2.5153 -2.7116 0.0252 8 7 1.3935 -2.6230 -0.6574 9 14 3.7750 -4.0193 -0.4138 10 1 4.9414 -3.9091 0.4986 11 1 3.1619 -5.3644 -0.2725 12 1 4.2228 -3.8243 -1.8162 13 6 1.7105 -0.1586 2.5261 14 1 1.1170 0.7502 2.4270 15 6 3.0137 0.1558 3.2667 16 6 2.6890 0.6753 4.6692 17 8 1.9454 -0.3159 5.3838 18 6 0.7227 -0.6867 4.7510 19 6 -0.3754 0.3784 4.8666 20 6 -1.3616 -0.7799 5.0950 21 6 -0.1639 -1.5959 5.6114 22 6 0.9218 -1.2020 3.3261 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.2210 -3.2365 -1.3886 31 1 3.5698 0.9155 2.7174 32 1 3.6151 -0.7499 3.3447 33 1 2.0972 1.5873 4.5909 34 1 3.6161 0.8881 5.2015 35 1 -0.2610 1.0318 5.7316 36 1 -0.5518 0.9265 3.9411 37 1 -1.7935 -1.1734 4.1748 38 1 -2.1107 -0.5729 5.8593 39 1 -0.1703 -2.6358 5.2849 40 1 0.0101 -1.4892 6.6821 41 1 1.4777 -2.1392 3.3513 42 1 -0.0489 -1.3638 2.8576 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:49 Heat of formation + Delta-G solvation = -28.683067 kcal Electronic energy + Delta-G solvation = -20768.499666 eV Core-core repulsion = 17941.922908 eV Total energy + Delta-G solvation = -2826.576757 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.40272 -38.47667 -37.04292 -34.11456 -33.75222 -30.75072 -29.95149 -27.65495 -26.68688 -26.17569 -24.58667 -24.25737 -21.86674 -20.90951 -19.38625 -18.23782 -17.39007 -16.92402 -16.46311 -16.38722 -15.65334 -15.47591 -15.25609 -14.65645 -14.30553 -14.00437 -13.73912 -13.64739 -13.31342 -13.19212 -12.86987 -12.79654 -12.70492 -12.56056 -12.28475 -12.14213 -12.08286 -11.90517 -11.73784 -11.62646 -11.56337 -11.29833 -11.08468 -10.66463 -10.39448 -10.21157 -8.46753 -7.80076 -5.28750 1.42517 1.46715 1.54589 2.52519 2.93691 3.33387 3.50478 3.68569 3.77487 3.93102 3.99419 4.16412 4.32281 4.41204 4.44718 4.60031 4.62979 4.70219 4.76756 4.80108 4.84990 4.88356 4.94636 4.98420 5.04130 5.06092 5.11869 5.12921 5.17966 5.20790 5.36693 5.42745 5.48906 5.52555 5.63094 5.74289 5.81584 6.04159 6.45204 6.53221 7.28377 7.99186 8.47583 9.23436 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.020566 B = 0.008130 C = 0.007595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.146629 B = 3443.277649 C = 3685.762778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.179 3.821 3 C -0.150 4.150 4 N -0.589 5.589 5 C -0.248 4.248 6 H 0.051 0.949 7 C -0.037 4.037 8 N -0.914 5.914 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.296 1.296 12 H -0.291 1.291 13 C 0.179 3.821 14 H 0.061 0.939 15 C -0.156 4.156 16 C 0.069 3.931 17 O -0.386 6.386 18 C 0.085 3.915 19 C -0.153 4.153 20 C -0.128 4.128 21 C -0.125 4.125 22 C -0.112 4.112 23 H 0.035 0.965 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.246 0.754 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.038 0.962 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.143 8.133 9.427 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.073 3.927 3 C -0.209 4.209 4 N -0.310 5.310 5 C -0.378 4.378 6 H 0.068 0.932 7 C -0.234 4.234 8 N -0.559 5.559 9 Si 0.777 3.223 10 H -0.200 1.200 11 H -0.223 1.223 12 H -0.218 1.218 13 C 0.072 3.928 14 H 0.079 0.921 15 C -0.196 4.196 16 C -0.008 4.008 17 O -0.306 6.306 18 C 0.045 3.955 19 C -0.191 4.191 20 C -0.165 4.165 21 C -0.162 4.162 22 C -0.151 4.151 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.056 0.944 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.125 7.961 9.441 12.739 hybrid contribution 0.680 -1.174 -1.028 1.702 sum -2.446 6.787 8.413 11.082 Atomic orbital electron populations 1.21959 0.98010 1.00404 0.98641 1.20190 0.92208 0.90106 0.90231 1.22226 1.00180 0.97599 1.00916 1.44150 1.60835 1.26172 0.99813 1.19122 1.09737 0.97941 1.11047 0.93163 1.25657 0.97445 0.98966 1.01299 1.70138 1.23234 1.39235 1.23339 0.85515 0.79743 0.79498 0.77503 1.19968 1.22317 1.21809 1.20347 0.93074 0.94353 0.84995 0.92078 1.22524 0.99562 1.00787 0.96713 1.22596 0.96259 0.90452 0.91491 1.87837 1.34830 1.59895 1.47997 1.22882 0.83237 0.96916 0.92437 1.23468 0.95947 0.97107 1.02530 1.22638 0.96053 0.96138 1.01707 1.23058 0.94572 0.98162 1.00423 1.22047 0.99976 0.99599 0.93502 0.94583 0.93812 0.94102 0.92863 0.94188 0.92282 0.92982 0.94498 0.91399 0.93853 0.92094 0.87812 0.88264 0.91696 0.90815 0.88657 0.91953 0.88290 0.94354 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 9.05 71.98 0.65 -4.95 16 2 C 0.18 8.12 2.31 44.99 0.10 8.23 16 3 C -0.15 -5.52 9.14 71.98 0.66 -4.86 16 4 N -0.59 -28.04 2.30 -653.39 -1.50 -29.54 16 5 C -0.25 -13.30 8.21 84.03 0.69 -12.61 16 6 H 0.05 2.78 6.74 -2.91 -0.02 2.76 16 7 C -0.04 -2.03 4.88 84.86 0.41 -1.62 16 8 N -0.91 -51.99 10.29 21.65 0.22 -51.77 16 9 Si 0.95 45.25 29.58 68.60 2.03 47.28 16 10 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 13 C 0.18 7.18 1.74 45.15 0.08 7.26 16 14 H 0.06 2.31 5.54 -2.39 -0.01 2.30 16 15 C -0.16 -5.69 5.35 30.66 0.16 -5.52 16 16 C 0.07 2.03 6.74 72.00 0.49 2.52 16 17 O -0.39 -12.90 10.53 -148.98 -1.57 -14.47 16 18 C 0.09 2.75 1.16 -10.58 -0.01 2.73 16 19 C -0.15 -3.99 6.90 31.02 0.21 -3.78 16 20 C -0.13 -3.10 7.73 31.16 0.24 -2.86 16 21 C -0.12 -3.46 7.50 31.01 0.23 -3.23 16 22 C -0.11 -4.48 4.51 30.64 0.14 -4.34 16 23 H 0.04 1.39 7.20 -2.38 -0.02 1.37 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.04 2.02 7.13 -2.39 -0.02 2.00 16 26 H 0.05 2.84 6.12 -2.39 -0.01 2.82 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 1.74 6.91 -2.39 -0.02 1.72 16 30 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.04 1.81 6.90 -2.39 -0.02 1.79 16 33 H 0.06 1.58 7.83 -2.39 -0.02 1.56 16 34 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.06 1.75 7.56 -2.39 -0.02 1.73 16 37 H 0.07 1.94 7.61 -2.38 -0.02 1.92 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.84 8.09 -2.39 -0.02 1.82 16 40 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.04 1.80 7.51 -2.39 -0.02 1.78 16 42 H 0.05 2.20 7.31 -2.39 -0.02 2.18 16 Total: -1.00 -59.45 315.14 4.21 -55.24 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.97 Total: 16.29 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 4.06 Total: -23.03 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -1.28 Total: -81.31 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -1.57 Total: -14.47 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -59.45 4.21 -55.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.559 kcal (2) G-P(sol) polarization free energy of solvation -59.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds