Wall clock time and date at job start Mon Mar 30 2020 06:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47060 * 2 1 4 4 N 1.46504 * 109.47178 * 240.00402 * 2 1 3 5 5 C 1.37096 * 119.99670 * 182.49777 * 4 2 1 6 6 H 1.08002 * 119.99414 * 193.46406 * 5 4 2 7 7 C 1.38951 * 120.00363 * 13.46874 * 5 4 2 8 8 N 1.31414 * 119.99811 * 9.18402 * 7 5 4 9 9 Si 1.86800 * 119.99834 * 189.18530 * 7 5 4 10 10 H 1.48500 * 109.47426 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47068 * 120.00157 * 9 7 5 12 12 H 1.48507 * 109.46772 * 239.99779 * 9 7 5 13 13 C 1.34778 * 120.00007 * 2.49237 * 4 2 1 14 14 O 1.21291 * 119.99852 * 355.03232 * 13 4 2 15 15 C 1.50693 * 119.99861 * 175.03179 * 13 4 2 16 16 H 1.08995 * 109.47195 * 308.18372 * 15 13 4 17 17 C 1.53000 * 109.47402 * 68.18341 * 15 13 4 18 18 C 1.53001 * 109.47022 * 59.99814 * 17 15 13 19 19 C 1.53002 * 109.47233 * 60.00108 * 18 17 15 20 20 C 1.52996 * 109.46871 * 300.00201 * 19 18 17 21 21 H 1.08993 * 109.47151 * 299.99330 * 20 19 18 22 22 C 1.53002 * 109.46871 * 179.97438 * 20 19 18 23 23 C 1.52996 * 109.47172 * 188.18299 * 15 13 4 24 24 H 1.08998 * 109.46813 * 179.47135 * 1 2 3 25 25 H 1.08998 * 109.47265 * 299.47702 * 1 2 3 26 26 H 1.09004 * 109.46810 * 59.47545 * 1 2 3 27 27 H 1.08993 * 109.47343 * 119.99976 * 2 1 3 28 28 H 1.09010 * 109.47105 * 305.96502 * 3 2 1 29 29 H 1.08996 * 109.47302 * 65.96375 * 3 2 1 30 30 H 1.09001 * 109.47226 * 185.96770 * 3 2 1 31 31 H 0.96997 * 119.99626 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47764 * 179.97438 * 17 15 13 33 33 H 1.09004 * 109.47020 * 300.00191 * 17 15 13 34 34 H 1.08998 * 109.47549 * 180.02562 * 18 17 15 35 35 H 1.09000 * 109.47370 * 300.00026 * 18 17 15 36 36 H 1.08996 * 109.46694 * 60.00354 * 19 18 17 37 37 H 1.09002 * 109.47247 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.47247 * 59.99482 * 22 20 19 39 39 H 1.09002 * 109.47246 * 179.97438 * 22 20 19 40 40 H 1.09003 * 109.47016 * 300.00034 * 22 20 19 41 41 H 1.09002 * 109.47140 * 59.99952 * 23 15 13 42 42 H 1.09003 * 109.47325 * 180.02562 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 3.3652 -0.8607 -1.3876 6 1 3.7388 -1.1676 -2.3533 7 6 4.2495 -0.6385 -0.3391 8 7 3.7910 -0.4427 0.8768 9 14 6.0900 -0.6180 -0.6580 10 1 6.3453 -0.8629 -2.1002 11 1 6.6441 0.7052 -0.2744 12 1 6.7437 -1.6808 0.1474 13 6 1.1436 -1.1585 -2.1085 14 8 -0.0487 -1.0887 -1.8970 15 6 1.6469 -1.7685 -3.3913 16 1 2.3466 -1.0832 -3.8695 17 6 2.3557 -3.0892 -3.0844 18 6 1.3735 -4.0513 -2.4131 19 6 0.1933 -4.3119 -3.3512 20 6 -0.5155 -2.9913 -3.6582 21 1 -0.8796 -2.5501 -2.7304 22 6 -1.6954 -3.2518 -4.5968 23 6 0.4667 -2.0292 -4.3294 24 1 -0.3633 -1.0276 -0.0095 25 1 -0.3634 0.5057 0.8946 26 1 -0.3633 0.5220 -0.8853 27 1 1.8934 -0.5138 0.8899 28 1 1.5920 1.9863 -0.8318 29 1 1.7665 1.9246 0.9385 30 1 3.1248 1.4444 -0.1068 31 1 4.4084 -0.2872 1.6087 32 1 2.7194 -3.5307 -4.0122 33 1 3.1965 -2.9035 -2.4159 34 1 1.8785 -4.9920 -2.1940 35 1 1.0095 -3.6101 -1.4852 36 1 0.5573 -4.7532 -4.2790 37 1 -0.5063 -4.9977 -2.8732 38 1 -2.3952 -3.9374 -4.1191 39 1 -2.2006 -2.3110 -4.8152 40 1 -1.3309 -3.6929 -5.5247 41 1 -0.0383 -1.0883 -4.5482 42 1 0.8307 -2.4709 -5.2572 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126650497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:41 Heat of formation + Delta-G solvation = -30.738388 kcal Electronic energy + Delta-G solvation = -20943.985873 eV Core-core repulsion = 18117.319990 eV Total energy + Delta-G solvation = -2826.665883 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.77561 -37.23368 -34.94996 -32.56991 -31.74999 -30.79137 -29.78114 -25.91183 -25.79722 -24.80064 -22.87569 -21.13573 -20.28706 -19.46150 -18.61023 -16.57881 -15.55263 -14.84575 -14.53238 -14.27670 -14.05579 -13.60478 -13.35294 -13.22079 -12.64645 -12.46307 -12.02792 -11.88950 -11.60129 -11.51454 -11.30567 -11.22898 -11.05207 -10.97619 -10.87030 -10.76832 -10.43086 -10.35028 -10.11866 -10.07903 -9.75714 -9.61684 -9.39020 -9.36072 -8.88575 -7.62581 -7.40815 -6.11375 -3.88003 3.08781 3.20069 3.22045 3.96348 4.08744 4.83068 5.12084 5.32012 5.37847 5.44865 5.74230 5.77857 5.97763 6.02230 6.11499 6.13899 6.16886 6.27066 6.35156 6.37767 6.40256 6.52701 6.54255 6.60683 6.64384 6.75927 6.77388 6.90575 6.92732 6.97185 6.99587 7.05128 7.13676 7.27763 7.37009 7.45926 7.72833 7.80064 7.94966 8.53212 9.13976 9.66555 10.04064 10.67856 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.008685 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.843724 B = 3223.186116 C = 3926.633729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.141 3.859 3 C -0.130 4.130 4 N -0.438 5.438 5 C -0.321 4.321 6 H 0.101 0.899 7 C 0.033 3.967 8 N -0.869 5.869 9 Si 0.917 3.083 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.465 3.535 14 O -0.594 6.594 15 C -0.093 4.093 16 H 0.076 0.924 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.111 4.111 21 H 0.117 0.883 22 C -0.141 4.141 23 C -0.084 4.084 24 H 0.062 0.938 25 H 0.012 0.988 26 H 0.055 0.945 27 H 0.121 0.879 28 H 0.019 0.981 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.265 0.735 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.041 0.959 41 H 0.056 0.944 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.186 -3.380 -5.648 6.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.038 3.962 3 C -0.188 4.188 4 N -0.155 5.155 5 C -0.449 4.449 6 H 0.119 0.881 7 C -0.170 4.170 8 N -0.509 5.509 9 Si 0.744 3.256 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.208 1.208 13 C 0.254 3.746 14 O -0.482 6.482 15 C -0.115 4.115 16 H 0.094 0.906 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.145 4.145 20 C -0.129 4.129 21 H 0.134 0.866 22 C -0.198 4.198 23 C -0.122 4.122 24 H 0.081 0.919 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.138 0.862 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.642 -3.282 -5.314 6.782 hybrid contribution 1.200 0.147 -0.161 1.219 sum -1.442 -3.135 -5.476 6.472 Atomic orbital electron populations 1.22355 0.96312 1.01959 0.98127 1.21447 0.91097 0.92853 0.90808 1.21967 1.02737 0.96330 0.97786 1.43804 1.05644 1.47540 1.18516 1.19741 0.81213 1.45935 0.98010 0.88104 1.25200 1.00020 0.97087 0.94718 1.69953 1.34025 1.47499 0.99420 0.86002 0.82968 0.77982 0.78627 1.19391 1.20676 1.20764 1.19941 0.86088 0.82307 0.86230 1.90459 1.16374 1.62031 1.79317 1.21061 0.97435 0.97490 0.95494 0.90587 1.21589 0.99131 0.93866 1.00454 1.21458 0.96004 0.98493 0.99268 1.21543 0.97126 0.97180 0.98621 1.21557 0.94582 0.95073 1.01722 0.86554 1.21799 0.98390 1.00630 0.98979 1.21275 0.95467 0.98995 0.96478 0.91926 0.96933 0.92620 0.86208 0.96146 0.94609 0.91132 0.92395 0.93132 0.89225 0.93126 0.91586 0.93372 0.93220 0.93589 0.93253 0.93966 0.92567 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 7.56 37.16 0.28 -2.68 16 2 C 0.14 3.40 2.84 -67.93 -0.19 3.20 16 3 C -0.13 -2.97 8.64 37.16 0.32 -2.65 16 4 N -0.44 -10.61 2.77 -107.73 -0.30 -10.91 16 5 C -0.32 -7.74 7.50 -14.93 -0.11 -7.85 16 6 H 0.10 2.32 5.25 -52.49 -0.28 2.04 16 7 C 0.03 0.79 4.21 -17.47 -0.07 0.71 16 8 N -0.87 -21.69 8.65 55.50 0.48 -21.21 16 9 Si 0.92 19.03 29.56 -169.99 -5.03 14.00 16 10 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.47 10.63 5.47 -10.99 -0.06 10.57 16 14 O -0.59 -14.17 8.61 5.55 0.05 -14.12 16 15 C -0.09 -1.82 2.17 -91.78 -0.20 -2.02 16 16 H 0.08 1.47 7.50 -51.93 -0.39 1.08 16 17 C -0.11 -2.05 5.08 -26.73 -0.14 -2.18 16 18 C -0.11 -2.03 5.70 -26.73 -0.15 -2.19 16 19 C -0.11 -1.71 5.20 -26.73 -0.14 -1.85 16 20 C -0.11 -1.91 2.43 -90.62 -0.22 -2.13 16 21 H 0.12 2.39 5.22 -51.93 -0.27 2.12 16 22 C -0.14 -2.03 9.19 37.16 0.34 -1.69 16 23 C -0.08 -1.47 4.43 -26.73 -0.12 -1.59 16 24 H 0.06 1.49 6.67 -51.93 -0.35 1.15 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 1.31 6.71 -51.93 -0.35 0.97 16 27 H 0.12 3.15 5.78 -51.93 -0.30 2.85 16 28 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.72 5.69 -51.93 -0.30 1.42 16 31 H 0.26 6.33 8.31 -40.82 -0.34 6.00 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.79 5.54 -51.93 -0.29 1.50 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.37 7.22 -51.93 -0.37 0.99 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 302.94 15.07 4.57 4.57 Total: -1.00 -25.09 302.94 -7.79 -32.88 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.10 Total: 7.14 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -0.46 Total: -12.34 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.18 Total: -32.12 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.05 Total: -14.12 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -25.09 -7.79 -32.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126650497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.140 kcal (2) G-P(sol) polarization free energy of solvation -25.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds