Wall clock time and date at job start Mon Mar 30 2020 06:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47060 * 2 1 4 4 N 1.46504 * 109.47178 * 240.00402 * 2 1 3 5 5 C 1.37096 * 119.99670 * 182.49777 * 4 2 1 6 6 H 1.08002 * 119.99414 * 193.46406 * 5 4 2 7 7 C 1.38951 * 120.00363 * 13.46874 * 5 4 2 8 8 N 1.31414 * 119.99811 * 9.18402 * 7 5 4 9 9 Si 1.86800 * 119.99834 * 189.18530 * 7 5 4 10 10 H 1.48500 * 109.47426 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47068 * 120.00157 * 9 7 5 12 12 H 1.48507 * 109.46772 * 239.99779 * 9 7 5 13 13 C 1.34778 * 120.00007 * 2.49237 * 4 2 1 14 14 O 1.21291 * 119.99852 * 355.03232 * 13 4 2 15 15 C 1.50693 * 119.99861 * 175.03179 * 13 4 2 16 16 H 1.08995 * 109.47195 * 308.18372 * 15 13 4 17 17 C 1.53000 * 109.47402 * 68.18341 * 15 13 4 18 18 C 1.53001 * 109.47022 * 59.99814 * 17 15 13 19 19 C 1.53002 * 109.47233 * 60.00108 * 18 17 15 20 20 C 1.52996 * 109.46871 * 300.00201 * 19 18 17 21 21 H 1.08993 * 109.47151 * 299.99330 * 20 19 18 22 22 C 1.53002 * 109.46871 * 179.97438 * 20 19 18 23 23 C 1.52996 * 109.47172 * 188.18299 * 15 13 4 24 24 H 1.08998 * 109.46813 * 179.47135 * 1 2 3 25 25 H 1.08998 * 109.47265 * 299.47702 * 1 2 3 26 26 H 1.09004 * 109.46810 * 59.47545 * 1 2 3 27 27 H 1.08993 * 109.47343 * 119.99976 * 2 1 3 28 28 H 1.09010 * 109.47105 * 305.96502 * 3 2 1 29 29 H 1.08996 * 109.47302 * 65.96375 * 3 2 1 30 30 H 1.09001 * 109.47226 * 185.96770 * 3 2 1 31 31 H 0.96997 * 119.99626 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47764 * 179.97438 * 17 15 13 33 33 H 1.09004 * 109.47020 * 300.00191 * 17 15 13 34 34 H 1.08998 * 109.47549 * 180.02562 * 18 17 15 35 35 H 1.09000 * 109.47370 * 300.00026 * 18 17 15 36 36 H 1.08996 * 109.46694 * 60.00354 * 19 18 17 37 37 H 1.09002 * 109.47247 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.47247 * 59.99482 * 22 20 19 39 39 H 1.09002 * 109.47246 * 179.97438 * 22 20 19 40 40 H 1.09003 * 109.47016 * 300.00034 * 22 20 19 41 41 H 1.09002 * 109.47140 * 59.99952 * 23 15 13 42 42 H 1.09003 * 109.47325 * 180.02562 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 3.3652 -0.8607 -1.3876 6 1 3.7388 -1.1676 -2.3533 7 6 4.2495 -0.6385 -0.3391 8 7 3.7910 -0.4427 0.8768 9 14 6.0900 -0.6180 -0.6580 10 1 6.3453 -0.8629 -2.1002 11 1 6.6441 0.7052 -0.2744 12 1 6.7437 -1.6808 0.1474 13 6 1.1436 -1.1585 -2.1085 14 8 -0.0487 -1.0887 -1.8970 15 6 1.6469 -1.7685 -3.3913 16 1 2.3466 -1.0832 -3.8695 17 6 2.3557 -3.0892 -3.0844 18 6 1.3735 -4.0513 -2.4131 19 6 0.1933 -4.3119 -3.3512 20 6 -0.5155 -2.9913 -3.6582 21 1 -0.8796 -2.5501 -2.7304 22 6 -1.6954 -3.2518 -4.5968 23 6 0.4667 -2.0292 -4.3294 24 1 -0.3633 -1.0276 -0.0095 25 1 -0.3634 0.5057 0.8946 26 1 -0.3633 0.5220 -0.8853 27 1 1.8934 -0.5138 0.8899 28 1 1.5920 1.9863 -0.8318 29 1 1.7665 1.9246 0.9385 30 1 3.1248 1.4444 -0.1068 31 1 4.4084 -0.2872 1.6087 32 1 2.7194 -3.5307 -4.0122 33 1 3.1965 -2.9035 -2.4159 34 1 1.8785 -4.9920 -2.1940 35 1 1.0095 -3.6101 -1.4852 36 1 0.5573 -4.7532 -4.2790 37 1 -0.5063 -4.9977 -2.8732 38 1 -2.3952 -3.9374 -4.1191 39 1 -2.2006 -2.3110 -4.8152 40 1 -1.3309 -3.6929 -5.5247 41 1 -0.0383 -1.0883 -4.5482 42 1 0.8307 -2.4709 -5.2572 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126650497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:38 Heat of formation + Delta-G solvation = -41.824678 kcal Electronic energy + Delta-G solvation = -20944.466610 eV Core-core repulsion = 18117.319990 eV Total energy + Delta-G solvation = -2827.146620 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -41.45471 -38.81850 -36.76066 -34.12047 -33.56165 -32.37836 -31.33900 -27.75137 -27.13188 -26.62720 -24.46168 -22.61724 -21.88934 -21.03534 -20.37670 -18.33752 -17.27527 -16.50037 -16.21602 -15.97631 -15.62435 -15.07146 -14.99090 -14.76667 -14.18801 -14.07032 -13.71574 -13.39705 -13.25387 -13.01405 -12.95732 -12.75135 -12.66649 -12.65409 -12.40765 -12.22673 -12.14408 -11.94580 -11.88544 -11.67878 -11.49479 -11.15045 -10.86703 -10.75323 -10.67813 -9.50508 -9.19241 -7.95032 -5.76257 1.43542 1.50375 1.60257 2.19652 2.35573 3.10339 3.30266 3.96591 3.99160 4.03814 4.35146 4.42365 4.47180 4.57542 4.63706 4.66847 4.72210 4.78141 4.87895 4.92258 4.93759 4.95942 5.05254 5.08737 5.10962 5.14027 5.19797 5.21283 5.32067 5.44730 5.47501 5.50610 5.55885 5.62833 5.63229 5.83601 5.85841 5.94628 6.10853 6.65824 7.28814 7.84130 8.21934 8.85296 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.008685 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.843724 B = 3223.186116 C = 3926.633729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.137 3.863 3 C -0.117 4.117 4 N -0.454 5.454 5 C -0.331 4.331 6 H 0.110 0.890 7 C -0.007 4.007 8 N -0.894 5.894 9 Si 0.978 3.022 10 H -0.258 1.258 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.457 3.543 14 O -0.608 6.608 15 C -0.093 4.093 16 H 0.077 0.923 17 C -0.107 4.107 18 C -0.113 4.113 19 C -0.101 4.101 20 C -0.113 4.113 21 H 0.076 0.924 22 C -0.134 4.134 23 C -0.080 4.080 24 H 0.044 0.956 25 H 0.031 0.969 26 H 0.044 0.956 27 H 0.098 0.902 28 H 0.020 0.980 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.264 0.736 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -4.350 -7.577 8.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.034 3.966 3 C -0.175 4.175 4 N -0.172 5.172 5 C -0.459 4.459 6 H 0.128 0.872 7 C -0.207 4.207 8 N -0.535 5.535 9 Si 0.803 3.197 10 H -0.181 1.181 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.247 3.753 14 O -0.497 6.497 15 C -0.114 4.114 16 H 0.095 0.905 17 C -0.145 4.145 18 C -0.150 4.150 19 C -0.138 4.138 20 C -0.131 4.131 21 H 0.094 0.906 22 C -0.192 4.192 23 C -0.118 4.118 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.166 -4.257 -7.259 8.689 hybrid contribution 0.976 0.435 0.474 1.169 sum -1.190 -3.822 -6.785 7.878 Atomic orbital electron populations 1.22126 0.95557 1.00824 0.98410 1.21373 0.91554 0.93304 0.90406 1.21809 1.01486 0.95719 0.98482 1.44015 1.06128 1.48201 1.18873 1.20024 0.81311 1.46026 0.98516 0.87222 1.25916 1.03544 0.96786 0.94468 1.70088 1.35028 1.48345 1.00023 0.85074 0.78317 0.77401 0.78918 1.18143 1.20998 1.21050 1.20646 0.85890 0.81643 0.87123 1.90467 1.17051 1.62235 1.79954 1.21107 0.98437 0.97940 0.93887 0.90526 1.21542 0.98228 0.93330 1.01411 1.21427 0.96879 0.98802 0.97926 1.21503 0.96331 0.96720 0.99254 1.21451 0.95659 0.95400 1.00592 0.90576 1.21725 0.97338 1.00869 0.99222 1.21277 0.94596 0.98852 0.97054 0.93705 0.95069 0.93728 0.88499 0.96047 0.93268 0.92721 0.92580 0.89926 0.91393 0.91439 0.95749 0.90743 0.92481 0.92823 0.93635 0.91790 0.93750 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.20 7.56 71.98 0.54 -4.65 16 2 C 0.14 6.76 2.84 44.99 0.13 6.89 16 3 C -0.12 -5.39 8.64 71.98 0.62 -4.76 16 4 N -0.45 -22.44 2.77 -613.13 -1.70 -24.14 16 5 C -0.33 -16.04 7.50 84.04 0.63 -15.41 16 6 H 0.11 4.99 5.25 -2.91 -0.02 4.98 16 7 C -0.01 -0.34 4.21 84.93 0.36 0.02 16 8 N -0.89 -45.44 8.65 21.66 0.19 -45.25 16 9 Si 0.98 38.80 29.56 68.60 2.03 40.83 16 10 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 11 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 13 C 0.46 21.17 5.47 87.65 0.48 21.65 16 14 O -0.61 -29.82 8.61 -3.06 -0.03 -29.85 16 15 C -0.09 -3.50 2.17 -11.54 -0.03 -3.53 16 16 H 0.08 2.87 7.50 -2.39 -0.02 2.86 16 17 C -0.11 -3.71 5.08 30.59 0.16 -3.56 16 18 C -0.11 -3.86 5.70 30.60 0.17 -3.69 16 19 C -0.10 -2.96 5.20 30.59 0.16 -2.80 16 20 C -0.11 -3.68 2.43 -10.79 -0.03 -3.71 16 21 H 0.08 3.15 5.22 -2.39 -0.01 3.14 16 22 C -0.13 -3.53 9.19 71.98 0.66 -2.86 16 23 C -0.08 -2.63 4.43 30.59 0.14 -2.49 16 24 H 0.04 2.20 6.67 -2.39 -0.02 2.19 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.04 2.14 6.71 -2.38 -0.02 2.12 16 27 H 0.10 5.27 5.78 -2.39 -0.01 5.26 16 28 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.05 2.68 5.69 -2.39 -0.01 2.67 16 31 H 0.26 12.83 8.31 -92.71 -0.77 12.06 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.07 2.65 5.54 -2.38 -0.01 2.64 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.02 1.02 7.22 -2.39 -0.02 1.00 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -54.58 302.94 5.47 -49.11 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.98 Total: 28.21 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 4.00 Total: -18.92 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -1.51 Total: -69.39 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.03 Total: -29.85 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -54.58 5.47 -49.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126650497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.288 kcal (2) G-P(sol) polarization free energy of solvation -54.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.62 seconds