Wall clock time and date at job start Mon Mar 30 2020 06:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47282 * 2 1 4 4 N 1.46503 * 109.47249 * 120.00123 * 2 1 3 5 5 C 1.37095 * 120.00094 * 139.25967 * 4 2 1 6 6 H 1.07994 * 120.00249 * 179.60741 * 5 4 2 7 7 C 1.38949 * 120.00010 * 359.59454 * 5 4 2 8 8 N 1.31419 * 119.99910 * 24.69929 * 7 5 4 9 9 Si 1.86800 * 120.00318 * 204.69060 * 7 5 4 10 10 H 1.48504 * 109.47056 * 90.00529 * 9 7 5 11 11 H 1.48499 * 109.47327 * 210.00491 * 9 7 5 12 12 H 1.48494 * 109.47207 * 330.00776 * 9 7 5 13 13 C 1.34777 * 119.99684 * 318.97689 * 4 2 1 14 14 O 1.21293 * 120.00278 * 355.02198 * 13 4 2 15 15 C 1.50703 * 119.99741 * 175.01672 * 13 4 2 16 16 H 1.08996 * 109.46901 * 64.41421 * 15 13 4 17 17 C 1.53002 * 109.47159 * 304.41470 * 15 13 4 18 18 C 1.53001 * 109.47027 * 300.00017 * 17 15 13 19 19 C 1.53005 * 109.46809 * 300.00000 * 18 17 15 20 20 C 1.53000 * 109.46993 * 60.00342 * 19 18 17 21 21 H 1.09001 * 109.47132 * 59.99797 * 20 19 18 22 22 C 1.52997 * 109.46680 * 179.97438 * 20 19 18 23 23 C 1.52996 * 109.47100 * 184.41169 * 15 13 4 24 24 H 1.08995 * 109.47512 * 322.00659 * 1 2 3 25 25 H 1.09001 * 109.47455 * 82.00343 * 1 2 3 26 26 H 1.09003 * 109.46923 * 201.99966 * 1 2 3 27 27 H 1.09000 * 109.47030 * 240.00173 * 2 1 3 28 28 H 1.08998 * 109.47610 * 176.39027 * 3 2 1 29 29 H 1.09001 * 109.47052 * 296.39659 * 3 2 1 30 30 H 1.09002 * 109.47149 * 56.38715 * 3 2 1 31 31 H 0.97004 * 119.99668 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46839 * 59.99794 * 17 15 13 33 33 H 1.09001 * 109.46836 * 179.97438 * 17 15 13 34 34 H 1.08999 * 109.47012 * 180.02562 * 18 17 15 35 35 H 1.09002 * 109.46932 * 59.99982 * 18 17 15 36 36 H 1.08995 * 109.46975 * 299.99653 * 19 18 17 37 37 H 1.09002 * 109.46525 * 179.97438 * 19 18 17 38 38 H 1.08999 * 109.46974 * 179.97438 * 22 20 19 39 39 H 1.09002 * 109.47436 * 299.99555 * 22 20 19 40 40 H 1.09001 * 109.47254 * 60.00178 * 22 20 19 41 41 H 1.09002 * 109.47213 * 179.97438 * 23 15 13 42 42 H 1.08999 * 109.47320 * 300.00220 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.0949 -1.5349 1.1087 6 1 3.4589 -2.0391 1.9917 7 6 3.7177 -1.7420 -0.1160 8 7 3.6350 -0.8293 -1.0579 9 14 4.6727 -3.3177 -0.4236 10 1 3.7635 -4.3444 -0.9932 11 1 5.7766 -3.0488 -1.3798 12 1 5.2372 -3.8125 0.8576 13 6 1.4127 -0.4916 2.3836 14 8 0.5223 0.3263 2.4808 15 6 1.8417 -1.2854 3.5907 16 1 2.8716 -1.0338 3.8437 17 6 1.7437 -2.7802 3.2793 18 6 0.2980 -3.1334 2.9241 19 6 -0.6141 -2.7977 4.1058 20 6 -0.5160 -1.3029 4.4171 21 1 -0.8263 -0.7288 3.5441 22 6 -1.4285 -0.9672 5.5984 23 6 0.9297 -0.9497 4.7723 24 1 -0.3634 0.8098 0.6326 25 1 -0.3634 0.1430 -1.0177 26 1 -0.3633 -0.9529 0.3850 27 1 1.8932 -0.5138 -0.8900 28 1 3.1280 1.4432 0.0647 29 1 1.7303 1.9373 -0.9205 30 1 1.6247 1.9747 0.8558 31 1 4.0701 -0.9738 -1.9128 32 1 2.3934 -3.0193 2.4374 33 1 2.0544 -3.3543 4.1522 34 1 0.2280 -4.1983 2.7027 35 1 -0.0123 -2.5592 2.0510 36 1 -0.3038 -3.3718 4.9788 37 1 -1.6441 -3.0489 3.8526 38 1 -1.3583 0.0977 5.8206 39 1 -2.4584 -1.2187 5.3450 40 1 -1.1185 -1.5412 6.4716 41 1 1.2397 -1.5242 5.6453 42 1 0.9995 0.1152 4.9942 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126650828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:44 Heat of formation + Delta-G solvation = -42.531339 kcal Electronic energy + Delta-G solvation = -21005.476118 eV Core-core repulsion = 18178.298855 eV Total energy + Delta-G solvation = -2827.177263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.72265 -37.10994 -34.89195 -32.62282 -31.94561 -30.67106 -29.79425 -25.95191 -25.86259 -24.87032 -22.87862 -21.14870 -20.48512 -19.36932 -18.57774 -16.53341 -15.55864 -14.80358 -14.37121 -14.30807 -14.06107 -13.68277 -13.40591 -13.05826 -12.75355 -12.33757 -12.09679 -11.86144 -11.78153 -11.48657 -11.32257 -11.26585 -11.21249 -10.97047 -10.89083 -10.80100 -10.43149 -10.35984 -10.27083 -10.01022 -9.72511 -9.65001 -9.37916 -9.22298 -8.69752 -7.89051 -7.73598 -6.30597 -3.78841 3.09490 3.21201 3.21483 4.00100 4.06767 4.85165 5.03758 5.29860 5.32498 5.41668 5.71721 5.77752 5.94470 6.00403 6.10265 6.12462 6.14216 6.23879 6.31989 6.34777 6.36676 6.50786 6.53903 6.55989 6.61044 6.67278 6.82672 6.88471 6.90939 6.95920 7.03251 7.04246 7.09256 7.19224 7.26014 7.43222 7.65907 7.67406 7.95323 8.52446 9.11150 9.68034 10.07631 10.59663 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.009159 C = 0.007424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.209142 B = 3056.524714 C = 3770.780368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.125 3.875 3 C -0.130 4.130 4 N -0.438 5.438 5 C -0.328 4.328 6 H 0.111 0.889 7 C 0.032 3.968 8 N -0.855 5.855 9 Si 0.910 3.090 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.464 3.536 14 O -0.600 6.600 15 C -0.092 4.092 16 H 0.077 0.923 17 C -0.127 4.127 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.103 4.103 21 H 0.102 0.898 22 C -0.141 4.141 23 C -0.084 4.084 24 H 0.065 0.935 25 H 0.032 0.968 26 H 0.040 0.960 27 H 0.142 0.858 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.267 0.733 32 H 0.101 0.899 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.049 0.951 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.470 -3.450 5.590 7.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.022 3.978 3 C -0.188 4.188 4 N -0.155 5.155 5 C -0.455 4.455 6 H 0.129 0.871 7 C -0.171 4.171 8 N -0.494 5.494 9 Si 0.737 3.263 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.253 3.747 14 O -0.488 6.488 15 C -0.113 4.113 16 H 0.095 0.905 17 C -0.164 4.164 18 C -0.152 4.152 19 C -0.147 4.147 20 C -0.121 4.121 21 H 0.120 0.880 22 C -0.198 4.198 23 C -0.122 4.122 24 H 0.084 0.916 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.158 0.842 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.804 -3.024 5.403 7.267 hybrid contribution 0.667 -0.777 -0.206 1.044 sum -3.138 -3.801 5.197 7.162 Atomic orbital electron populations 1.22220 0.97843 1.01890 0.99000 1.21812 0.90666 0.93483 0.91804 1.21822 1.01633 0.96788 0.98561 1.43956 1.26803 1.38874 1.05905 1.19932 1.08321 1.21168 0.96087 0.87122 1.25160 0.97905 0.97995 0.96082 1.69943 1.41811 1.30994 1.06675 0.86188 0.78921 0.82577 0.78658 1.20300 1.21077 1.19421 1.19869 0.85262 0.85441 0.84097 1.90424 1.34848 1.38770 1.84721 1.21018 0.99652 0.95938 0.94740 0.90498 1.21886 0.97760 0.94281 1.02520 1.21464 0.95469 0.99933 0.98313 1.21582 0.98667 0.96466 0.98003 1.21343 0.95000 0.96001 0.99729 0.87979 1.21789 0.99030 1.00826 0.98156 1.21258 0.94519 1.00547 0.95875 0.91649 0.94877 0.94064 0.84204 0.92284 0.94666 0.94684 0.92200 0.88061 0.93228 0.93039 0.91684 0.93140 0.93204 0.93122 0.93553 0.93780 0.93252 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.14 37.15 0.30 -3.06 16 2 C 0.13 3.00 2.41 -67.93 -0.16 2.84 16 3 C -0.13 -3.02 8.93 37.16 0.33 -2.69 16 4 N -0.44 -10.57 2.55 -107.73 -0.28 -10.84 16 5 C -0.33 -7.90 7.87 -14.93 -0.12 -8.01 16 6 H 0.11 2.53 4.83 -52.49 -0.25 2.27 16 7 C 0.03 0.76 5.11 -17.46 -0.09 0.67 16 8 N -0.85 -21.26 9.37 55.50 0.52 -20.74 16 9 Si 0.91 18.79 29.62 -169.99 -5.03 13.76 16 10 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 13 C 0.46 10.70 4.90 -10.98 -0.05 10.65 16 14 O -0.60 -14.74 10.71 5.55 0.06 -14.69 16 15 C -0.09 -1.81 2.22 -91.77 -0.20 -2.01 16 16 H 0.08 1.51 7.92 -51.93 -0.41 1.10 16 17 C -0.13 -2.30 4.96 -26.73 -0.13 -2.43 16 18 C -0.11 -2.00 5.70 -26.73 -0.15 -2.15 16 19 C -0.11 -1.74 5.20 -26.73 -0.14 -1.87 16 20 C -0.10 -1.76 2.42 -90.62 -0.22 -1.98 16 21 H 0.10 2.10 5.67 -51.93 -0.29 1.80 16 22 C -0.14 -2.03 9.19 37.16 0.34 -1.68 16 23 C -0.08 -1.48 4.36 -26.73 -0.12 -1.60 16 24 H 0.06 1.51 6.38 -51.93 -0.33 1.18 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.92 7.72 -51.93 -0.40 0.52 16 27 H 0.14 3.59 4.82 -54.05 -0.26 3.32 16 28 H 0.06 1.46 7.71 -51.93 -0.40 1.06 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.03 0.83 7.47 -51.93 -0.39 0.44 16 31 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 32 H 0.10 1.99 4.66 -51.93 -0.24 1.75 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.31 6.99 -51.93 -0.36 0.95 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 LS Contribution 306.95 15.07 4.63 4.63 Total: -1.00 -25.54 306.95 -7.64 -33.18 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.13 Total: 8.03 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.41 Total: -13.33 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.24 Total: -31.58 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.06 Total: -14.69 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -25.54 -7.64 -33.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126650828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.347 kcal (2) G-P(sol) polarization free energy of solvation -25.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds