Wall clock time and date at job start Mon Mar 30 2020 06:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47282 * 2 1 4 4 N 1.46503 * 109.47249 * 120.00123 * 2 1 3 5 5 C 1.37095 * 120.00094 * 139.25967 * 4 2 1 6 6 H 1.07994 * 120.00249 * 179.60741 * 5 4 2 7 7 C 1.38949 * 120.00010 * 359.59454 * 5 4 2 8 8 N 1.31419 * 119.99910 * 24.69929 * 7 5 4 9 9 Si 1.86800 * 120.00318 * 204.69060 * 7 5 4 10 10 H 1.48504 * 109.47056 * 90.00529 * 9 7 5 11 11 H 1.48499 * 109.47327 * 210.00491 * 9 7 5 12 12 H 1.48494 * 109.47207 * 330.00776 * 9 7 5 13 13 C 1.34777 * 119.99684 * 318.97689 * 4 2 1 14 14 O 1.21293 * 120.00278 * 355.02198 * 13 4 2 15 15 C 1.50703 * 119.99741 * 175.01672 * 13 4 2 16 16 H 1.08996 * 109.46901 * 64.41421 * 15 13 4 17 17 C 1.53002 * 109.47159 * 304.41470 * 15 13 4 18 18 C 1.53001 * 109.47027 * 300.00017 * 17 15 13 19 19 C 1.53005 * 109.46809 * 300.00000 * 18 17 15 20 20 C 1.53000 * 109.46993 * 60.00342 * 19 18 17 21 21 H 1.09001 * 109.47132 * 59.99797 * 20 19 18 22 22 C 1.52997 * 109.46680 * 179.97438 * 20 19 18 23 23 C 1.52996 * 109.47100 * 184.41169 * 15 13 4 24 24 H 1.08995 * 109.47512 * 322.00659 * 1 2 3 25 25 H 1.09001 * 109.47455 * 82.00343 * 1 2 3 26 26 H 1.09003 * 109.46923 * 201.99966 * 1 2 3 27 27 H 1.09000 * 109.47030 * 240.00173 * 2 1 3 28 28 H 1.08998 * 109.47610 * 176.39027 * 3 2 1 29 29 H 1.09001 * 109.47052 * 296.39659 * 3 2 1 30 30 H 1.09002 * 109.47149 * 56.38715 * 3 2 1 31 31 H 0.97004 * 119.99668 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46839 * 59.99794 * 17 15 13 33 33 H 1.09001 * 109.46836 * 179.97438 * 17 15 13 34 34 H 1.08999 * 109.47012 * 180.02562 * 18 17 15 35 35 H 1.09002 * 109.46932 * 59.99982 * 18 17 15 36 36 H 1.08995 * 109.46975 * 299.99653 * 19 18 17 37 37 H 1.09002 * 109.46525 * 179.97438 * 19 18 17 38 38 H 1.08999 * 109.46974 * 179.97438 * 22 20 19 39 39 H 1.09002 * 109.47436 * 299.99555 * 22 20 19 40 40 H 1.09001 * 109.47254 * 60.00178 * 22 20 19 41 41 H 1.09002 * 109.47213 * 179.97438 * 23 15 13 42 42 H 1.08999 * 109.47320 * 300.00220 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.0949 -1.5349 1.1087 6 1 3.4589 -2.0391 1.9917 7 6 3.7177 -1.7420 -0.1160 8 7 3.6350 -0.8293 -1.0579 9 14 4.6727 -3.3177 -0.4236 10 1 3.7635 -4.3444 -0.9932 11 1 5.7766 -3.0488 -1.3798 12 1 5.2372 -3.8125 0.8576 13 6 1.4127 -0.4916 2.3836 14 8 0.5223 0.3263 2.4808 15 6 1.8417 -1.2854 3.5907 16 1 2.8716 -1.0338 3.8437 17 6 1.7437 -2.7802 3.2793 18 6 0.2980 -3.1334 2.9241 19 6 -0.6141 -2.7977 4.1058 20 6 -0.5160 -1.3029 4.4171 21 1 -0.8263 -0.7288 3.5441 22 6 -1.4285 -0.9672 5.5984 23 6 0.9297 -0.9497 4.7723 24 1 -0.3634 0.8098 0.6326 25 1 -0.3634 0.1430 -1.0177 26 1 -0.3633 -0.9529 0.3850 27 1 1.8932 -0.5138 -0.8900 28 1 3.1280 1.4432 0.0647 29 1 1.7303 1.9373 -0.9205 30 1 1.6247 1.9747 0.8558 31 1 4.0701 -0.9738 -1.9128 32 1 2.3934 -3.0193 2.4374 33 1 2.0544 -3.3543 4.1522 34 1 0.2280 -4.1983 2.7027 35 1 -0.0123 -2.5592 2.0510 36 1 -0.3038 -3.3718 4.9788 37 1 -1.6441 -3.0489 3.8526 38 1 -1.3583 0.0977 5.8206 39 1 -2.4584 -1.2187 5.3450 40 1 -1.1185 -1.5412 6.4716 41 1 1.2397 -1.5242 5.6453 42 1 0.9995 0.1152 4.9942 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126650828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:43 Heat of formation + Delta-G solvation = -53.984916 kcal Electronic energy + Delta-G solvation = -21005.972783 eV Core-core repulsion = 18178.298855 eV Total energy + Delta-G solvation = -2827.673928 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38605 -38.69121 -36.71597 -34.20126 -33.71214 -32.25399 -31.34950 -27.81616 -27.19902 -26.66717 -24.46468 -22.63276 -22.04260 -20.93196 -20.35673 -18.28537 -17.26511 -16.34179 -16.13795 -15.98565 -15.66299 -15.16508 -14.97173 -14.64231 -14.27280 -14.05227 -13.75202 -13.50008 -13.20028 -13.05830 -12.91934 -12.87695 -12.81620 -12.65321 -12.43545 -12.21057 -12.11536 -11.97322 -11.88587 -11.67106 -11.39423 -11.17609 -10.79649 -10.75669 -10.48812 -9.68216 -9.60409 -8.13638 -5.66284 1.44830 1.52539 1.60544 2.22106 2.34680 3.11801 3.22653 3.94236 3.96788 4.03106 4.32640 4.41015 4.44646 4.55102 4.62360 4.66333 4.69248 4.77697 4.84418 4.88512 4.92449 4.96954 5.04574 5.07477 5.11247 5.15394 5.15657 5.22803 5.28569 5.31861 5.46631 5.51611 5.54673 5.61826 5.64615 5.76084 5.78363 5.90216 6.08681 6.65788 7.26381 7.85517 8.25390 8.77889 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.009159 C = 0.007424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.209142 B = 3056.524714 C = 3770.780368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.118 3.882 3 C -0.115 4.115 4 N -0.450 5.450 5 C -0.341 4.341 6 H 0.122 0.878 7 C -0.009 4.009 8 N -0.881 5.881 9 Si 0.974 3.026 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.257 1.257 13 C 0.456 3.544 14 O -0.621 6.621 15 C -0.093 4.093 16 H 0.075 0.925 17 C -0.122 4.122 18 C -0.113 4.113 19 C -0.103 4.103 20 C -0.103 4.103 21 H 0.060 0.940 22 C -0.135 4.135 23 C -0.080 4.080 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.030 0.970 27 H 0.129 0.871 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.022 0.978 31 H 0.267 0.733 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.027 0.973 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 -5.306 7.043 9.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.015 3.985 3 C -0.173 4.173 4 N -0.168 5.168 5 C -0.468 4.468 6 H 0.139 0.861 7 C -0.210 4.210 8 N -0.521 5.521 9 Si 0.798 3.202 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.181 1.181 13 C 0.246 3.754 14 O -0.510 6.510 15 C -0.114 4.114 16 H 0.093 0.907 17 C -0.159 4.159 18 C -0.151 4.151 19 C -0.140 4.140 20 C -0.122 4.122 21 H 0.079 0.921 22 C -0.192 4.192 23 C -0.118 4.118 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.145 0.855 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.843 -4.880 6.870 9.262 hybrid contribution 0.655 -0.133 -0.675 0.950 sum -3.189 -5.013 6.195 8.584 Atomic orbital electron populations 1.22052 0.96761 1.00716 0.99901 1.21822 0.91507 0.93443 0.91769 1.21660 0.99977 0.96772 0.98872 1.44148 1.27134 1.39233 1.06291 1.20276 1.08406 1.21347 0.96798 0.86108 1.25913 0.98991 1.00239 0.95814 1.70036 1.42819 1.32278 1.06982 0.85203 0.77382 0.78879 0.78687 1.20419 1.21523 1.18098 1.20548 0.84683 0.85333 0.84794 1.90412 1.35640 1.39685 1.85235 1.21077 0.99850 0.96663 0.93797 0.90727 1.21823 0.97812 0.93197 1.03059 1.21441 0.95481 1.00415 0.97716 1.21542 0.98864 0.95563 0.98075 1.21258 0.95131 0.96515 0.99271 0.92133 1.21722 0.98934 1.00855 0.97676 1.21257 0.94547 1.00048 0.95921 0.92918 0.92746 0.95108 0.85461 0.94341 0.92880 0.95892 0.92238 0.89843 0.90134 0.91178 0.95406 0.90555 0.92325 0.93727 0.92652 0.91543 0.90201 0.93902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.17 8.14 71.98 0.59 -5.58 16 2 C 0.12 5.78 2.41 44.99 0.11 5.89 16 3 C -0.11 -5.46 8.93 71.98 0.64 -4.82 16 4 N -0.45 -22.15 2.55 -613.14 -1.57 -23.71 16 5 C -0.34 -16.50 7.87 84.04 0.66 -15.84 16 6 H 0.12 5.46 4.83 -2.91 -0.01 5.45 16 7 C -0.01 -0.44 5.11 84.93 0.43 -0.01 16 8 N -0.88 -44.38 9.37 21.66 0.20 -44.17 16 9 Si 0.97 38.21 29.62 68.60 2.03 40.24 16 10 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 11 H -0.29 -11.47 7.11 99.48 0.71 -10.76 16 12 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 13 C 0.46 21.37 4.90 87.66 0.43 21.80 16 14 O -0.62 -31.41 10.71 -3.07 -0.03 -31.44 16 15 C -0.09 -3.56 2.22 -11.54 -0.03 -3.58 16 16 H 0.07 2.87 7.92 -2.39 -0.02 2.85 16 17 C -0.12 -4.15 4.96 30.60 0.15 -3.99 16 18 C -0.11 -3.76 5.70 30.60 0.17 -3.59 16 19 C -0.10 -2.97 5.20 30.60 0.16 -2.81 16 20 C -0.10 -3.38 2.42 -10.79 -0.03 -3.41 16 21 H 0.06 2.52 5.67 -2.39 -0.01 2.50 16 22 C -0.13 -3.55 9.19 71.98 0.66 -2.89 16 23 C -0.08 -2.68 4.36 30.59 0.13 -2.55 16 24 H 0.05 2.49 6.38 -2.39 -0.02 2.47 16 25 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.03 1.41 7.72 -2.39 -0.02 1.39 16 27 H 0.13 6.67 4.82 -6.57 -0.03 6.64 16 28 H 0.04 1.95 7.71 -2.39 -0.02 1.93 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.02 1.10 7.47 -2.39 -0.02 1.08 16 31 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 32 H 0.08 3.17 4.66 -2.39 -0.01 3.16 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.03 1.12 6.99 -2.39 -0.02 1.10 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.04 1.56 8.05 -2.39 -0.02 1.54 16 Total: -1.00 -55.57 306.95 5.69 -49.88 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.96 Total: 30.58 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 4.09 Total: -21.38 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -1.36 Total: -67.89 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.03 Total: -31.44 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -55.57 5.69 -49.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126650828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.100 kcal (2) G-P(sol) polarization free energy of solvation -55.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds