Wall clock time and date at job start Mon Mar 30 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47130 * 2 1 4 4 N 1.46500 * 109.46595 * 119.99958 * 2 1 3 5 5 C 1.37095 * 120.00244 * 65.01908 * 4 2 1 6 6 H 1.07998 * 120.00280 * 187.98652 * 5 4 2 7 7 C 1.38950 * 119.99876 * 7.98543 * 5 4 2 8 8 N 1.31412 * 120.00133 * 9.88165 * 7 5 4 9 9 Si 1.86803 * 120.00225 * 189.88609 * 7 5 4 10 10 H 1.48504 * 109.46696 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47580 * 119.99539 * 9 7 5 12 12 H 1.48494 * 109.47171 * 240.00004 * 9 7 5 13 13 C 1.34777 * 119.99646 * 245.01064 * 4 2 1 14 14 O 1.21285 * 120.00544 * 6.07114 * 13 4 2 15 15 C 1.50700 * 119.99606 * 186.06927 * 13 4 2 16 16 H 1.09002 * 109.47646 * 38.36112 * 15 13 4 17 17 C 1.53004 * 109.47437 * 278.35726 * 15 13 4 18 18 C 1.52995 * 109.47663 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.47140 * 59.99504 * 18 17 15 20 20 C 1.52995 * 109.47246 * 300.00600 * 19 18 17 21 21 H 1.09002 * 109.47141 * 299.99178 * 20 19 18 22 22 C 1.52998 * 109.46811 * 179.97438 * 20 19 18 23 23 C 1.52998 * 109.47050 * 158.35956 * 15 13 4 24 24 H 1.09000 * 109.46954 * 304.18059 * 1 2 3 25 25 H 1.09002 * 109.46690 * 64.17663 * 1 2 3 26 26 H 1.08994 * 109.47606 * 184.17566 * 1 2 3 27 27 H 1.08994 * 109.46723 * 239.99944 * 2 1 3 28 28 H 1.09003 * 109.46512 * 173.36253 * 3 2 1 29 29 H 1.08994 * 109.47294 * 293.35914 * 3 2 1 30 30 H 1.08995 * 109.47495 * 53.36049 * 3 2 1 31 31 H 0.96999 * 120.00264 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.46939 * 59.99698 * 17 15 13 33 33 H 1.09002 * 109.47018 * 300.00771 * 17 15 13 34 34 H 1.08999 * 109.47177 * 180.02562 * 18 17 15 35 35 H 1.09008 * 109.46974 * 300.00020 * 18 17 15 36 36 H 1.09002 * 109.46379 * 60.00244 * 19 18 17 37 37 H 1.08994 * 109.46806 * 180.02562 * 19 18 17 38 38 H 1.08998 * 109.47612 * 60.00249 * 22 20 19 39 39 H 1.09008 * 109.47287 * 180.02562 * 22 20 19 40 40 H 1.09000 * 109.47466 * 299.99874 * 22 20 19 41 41 H 1.09000 * 109.47466 * 59.99875 * 23 15 13 42 42 H 1.08999 * 109.47286 * 299.99847 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7740 -2.0293 1.3626 6 1 2.0184 -2.5107 2.2979 7 6 1.2119 -2.7668 0.3278 8 7 1.0934 -2.2360 -0.8685 9 14 0.6244 -4.5129 0.6370 10 1 0.8692 -4.8733 2.0567 11 1 -0.8288 -4.6052 0.3459 12 1 1.3665 -5.4485 -0.2457 13 6 2.7077 -0.0099 2.1331 14 8 2.8296 1.1934 2.0416 15 6 3.3272 -0.7438 3.2944 16 1 3.7278 -1.6972 2.9498 17 6 2.2635 -0.9947 4.3652 18 6 2.8925 -1.7393 5.5444 19 6 4.0228 -0.8949 6.1364 20 6 5.0865 -0.6441 5.0656 21 1 5.4874 -1.5974 4.7213 22 6 6.2164 0.2009 5.6575 23 6 4.4577 0.1001 3.8865 24 1 -0.3633 0.5774 0.8502 25 1 -0.3633 0.4477 -0.9251 26 1 -0.3634 -1.0248 0.0748 27 1 1.8933 -0.5138 -0.8899 28 1 3.1236 1.4446 0.1188 29 1 1.7770 1.9208 -0.9434 30 1 1.5830 1.9895 0.8245 31 1 0.7007 -2.7507 -1.5908 32 1 1.4580 -1.5960 3.9433 33 1 1.8629 -0.0414 4.7098 34 1 2.1345 -1.9184 6.3070 35 1 3.2933 -2.6927 5.2000 36 1 3.6220 0.0585 6.4807 37 1 4.4712 -1.4256 6.9762 38 1 6.6647 -0.3292 6.4978 39 1 6.9741 0.3800 4.8945 40 1 5.8154 1.1542 6.0016 41 1 4.0572 1.0535 4.2312 42 1 5.2155 0.2789 3.1238 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126650974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:51 Heat of formation + Delta-G solvation = -51.030007 kcal Electronic energy + Delta-G solvation = -20460.808541 eV Core-core repulsion = 17633.262748 eV Total energy + Delta-G solvation = -2827.545793 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 7.11 seconds Orbital eigenvalues (eV) -41.22785 -39.09049 -36.99131 -34.12174 -33.55116 -32.64913 -31.30019 -27.74345 -27.19965 -26.68313 -24.60452 -22.52685 -22.05105 -20.64189 -20.51808 -18.73056 -17.37576 -16.40160 -16.17686 -15.96530 -15.81134 -15.24700 -14.98067 -14.70513 -14.50688 -14.01294 -13.79219 -13.62339 -13.19771 -13.18610 -13.04395 -12.78206 -12.67191 -12.61716 -12.30472 -12.21159 -12.14645 -11.89490 -11.80733 -11.76399 -11.61685 -11.28499 -11.13900 -10.87443 -10.73170 -9.61541 -9.44857 -8.01640 -5.79700 1.42440 1.49447 1.60301 2.11719 2.32153 3.03786 3.25545 3.85156 3.94057 3.94546 4.31909 4.32193 4.39381 4.53986 4.56377 4.62800 4.63294 4.70111 4.81374 4.84406 4.89010 4.90901 4.98622 5.06039 5.12393 5.14035 5.19576 5.22463 5.30912 5.34897 5.39960 5.43355 5.47042 5.50738 5.56798 5.68161 5.82278 5.82716 5.99020 6.60878 7.22842 7.76544 8.13696 8.80025 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.020833 B = 0.008177 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.674817 B = 3423.328339 C = 4345.554735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.139 3.861 3 C -0.116 4.116 4 N -0.452 5.452 5 C -0.338 4.338 6 H 0.112 0.888 7 C -0.009 4.009 8 N -0.891 5.891 9 Si 0.983 3.017 10 H -0.257 1.257 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.442 3.558 14 O -0.627 6.627 15 C -0.084 4.084 16 H 0.078 0.922 17 C -0.101 4.101 18 C -0.111 4.111 19 C -0.108 4.108 20 C -0.089 4.089 21 H 0.071 0.929 22 C -0.141 4.141 23 C -0.083 4.083 24 H 0.014 0.986 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.266 0.734 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.877 -1.824 10.006 10.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.036 3.964 3 C -0.174 4.174 4 N -0.169 5.169 5 C -0.465 4.465 6 H 0.129 0.871 7 C -0.209 4.209 8 N -0.531 5.531 9 Si 0.808 3.192 10 H -0.181 1.181 11 H -0.208 1.208 12 H -0.208 1.208 13 C 0.232 3.768 14 O -0.517 6.517 15 C -0.106 4.106 16 H 0.096 0.904 17 C -0.139 4.139 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.108 4.108 21 H 0.089 0.911 22 C -0.198 4.198 23 C -0.121 4.121 24 H 0.033 0.967 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.838 -1.324 9.736 10.548 hybrid contribution -0.542 -0.583 -0.641 1.022 sum 3.297 -1.907 9.095 9.860 Atomic orbital electron populations 1.21877 0.96208 1.01129 0.98138 1.21419 0.94329 0.90732 0.89930 1.22135 1.00219 0.96501 0.98506 1.44125 1.46076 1.08899 1.17809 1.20124 1.40959 0.84080 1.01372 0.87087 1.25990 0.97348 1.03172 0.94375 1.70165 1.43807 1.37844 1.01332 0.84991 0.77642 0.77615 0.78970 1.18076 1.20763 1.20838 1.20856 0.82413 0.87547 0.85986 1.90538 1.66475 1.15705 1.78963 1.21046 0.96900 0.99070 0.93554 0.90381 1.21394 0.97075 1.00143 0.95279 1.21519 0.98291 0.98611 0.96462 1.21577 0.95295 1.00044 0.97585 1.21143 0.95973 0.98980 0.94685 0.91070 1.21777 0.97392 0.99751 1.00894 1.21292 0.95650 0.98004 0.97136 0.96660 0.93212 0.92172 0.88110 0.94452 0.94461 0.93405 0.92336 0.92432 0.93445 0.90502 0.91551 0.92359 0.89855 0.90910 0.93081 0.92951 0.93078 0.93987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.58 71.98 0.62 -4.85 16 2 C 0.14 7.03 2.84 44.99 0.13 7.16 16 3 C -0.12 -5.57 7.58 71.98 0.55 -5.02 16 4 N -0.45 -23.11 2.75 -613.14 -1.69 -24.79 16 5 C -0.34 -16.75 8.42 84.04 0.71 -16.04 16 6 H 0.11 5.16 5.12 -2.91 -0.01 5.15 16 7 C -0.01 -0.41 4.31 84.93 0.37 -0.05 16 8 N -0.89 -45.23 8.21 21.66 0.18 -45.06 16 9 Si 0.98 38.80 29.56 68.60 2.03 40.83 16 10 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 11 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 12 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 13 C 0.44 21.65 6.60 87.66 0.58 22.23 16 14 O -0.63 -33.15 11.43 -3.05 -0.03 -33.18 16 15 C -0.08 -3.33 1.67 -11.54 -0.02 -3.35 16 16 H 0.08 3.13 7.08 -2.39 -0.02 3.12 16 17 C -0.10 -3.50 4.92 30.59 0.15 -3.35 16 18 C -0.11 -2.89 5.92 30.59 0.18 -2.71 16 19 C -0.11 -2.48 5.20 30.59 0.16 -2.32 16 20 C -0.09 -2.31 2.72 -10.81 -0.03 -2.34 16 21 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 22 C -0.14 -3.03 9.19 71.98 0.66 -2.37 16 23 C -0.08 -2.88 3.97 30.58 0.12 -2.76 16 24 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.06 3.01 5.53 -2.39 -0.01 3.00 16 27 H 0.10 5.51 5.86 -2.39 -0.01 5.49 16 28 H 0.04 1.88 6.74 -2.39 -0.02 1.86 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 2.39 6.64 -2.39 -0.02 2.38 16 31 H 0.27 12.83 8.31 -92.71 -0.77 12.06 16 32 H 0.06 2.17 6.60 -2.38 -0.02 2.15 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.05 1.91 7.89 -2.39 -0.02 1.90 16 42 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -57.21 310.81 5.62 -51.59 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.97 Total: 26.39 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 4.17 Total: -15.77 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -1.51 Total: -69.85 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.03 Total: -33.18 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -57.21 5.62 -51.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126650974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.560 kcal (2) G-P(sol) polarization free energy of solvation -57.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.12 seconds