Wall clock time and date at job start Mon Mar 30 2020 07:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46676 * 2 1 4 4 C 1.52997 * 109.47528 * 120.00387 * 2 1 3 5 5 H 1.09001 * 109.46696 * 300.00489 * 4 2 1 6 6 C 1.52999 * 109.46939 * 59.99990 * 4 2 1 7 7 C 1.53000 * 109.46965 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46885 * 299.99997 * 7 6 4 9 9 H 1.09000 * 109.46902 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47127 * 299.99781 * 8 7 6 11 11 C 1.52999 * 109.47316 * 60.00218 * 8 7 6 12 12 C 1.52995 * 109.47403 * 180.02562 * 4 2 1 13 13 H 1.08998 * 109.47001 * 59.99522 * 12 4 2 14 14 N 1.46511 * 109.46866 * 299.99828 * 12 4 2 15 15 C 1.34775 * 119.99708 * 167.42825 * 14 12 4 16 16 O 1.21685 * 120.00215 * 0.02562 * 15 14 12 17 17 C 1.46374 * 119.99969 * 180.02562 * 15 14 12 18 18 H 1.08000 * 119.99472 * 8.96097 * 17 15 14 19 19 C 1.40044 * 120.00031 * 188.96019 * 17 15 14 20 20 N 1.30676 * 119.99818 * 191.46128 * 19 17 15 21 21 Si 1.86792 * 120.00095 * 11.45995 * 19 17 15 22 22 H 1.48507 * 109.47112 * 269.99884 * 21 19 17 23 23 H 1.48497 * 109.47423 * 30.00055 * 21 19 17 24 24 H 1.48500 * 109.47306 * 150.00158 * 21 19 17 25 25 H 1.08994 * 109.47458 * 60.00028 * 1 2 3 26 26 H 1.09005 * 109.46841 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47100 * 299.99234 * 1 2 3 28 28 H 1.09006 * 109.46940 * 240.00760 * 2 1 3 29 29 H 1.08999 * 109.46915 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47833 * 300.00279 * 3 2 1 31 31 H 1.09006 * 109.46815 * 60.00684 * 3 2 1 32 32 H 1.09006 * 109.47197 * 300.00175 * 6 4 2 33 33 H 1.08999 * 109.47573 * 60.00196 * 6 4 2 34 34 H 1.08993 * 109.47541 * 60.00102 * 7 6 4 35 35 H 1.09005 * 109.47114 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.47067 * 42.72146 * 10 8 7 37 37 H 1.09002 * 109.47294 * 162.71529 * 10 8 7 38 38 H 1.09002 * 109.47714 * 282.71869 * 10 8 7 39 39 H 1.08993 * 109.46944 * 179.97438 * 11 8 7 40 40 H 1.09001 * 109.47019 * 59.99421 * 11 8 7 41 41 H 0.97001 * 119.99929 * 347.43051 * 14 12 4 42 42 H 0.97003 * 119.99942 * 354.90756 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1391 6 6 1.5302 -2.1638 1.2490 7 6 2.0397 -2.8849 2.4985 8 6 3.5698 -2.8849 2.4990 9 1 3.9328 -3.3990 3.3889 10 6 4.0802 -3.6062 1.2500 11 6 4.0797 -1.4424 2.4991 12 6 3.5701 -0.7207 1.2494 13 1 3.9330 0.3071 1.2496 14 7 4.0589 -1.4110 0.0531 15 6 5.3576 -1.3182 -0.2950 16 8 6.1243 -0.6616 0.3845 17 6 5.8459 -2.0073 -1.4905 18 1 5.1460 -2.4682 -2.1717 19 6 7.2205 -2.0690 -1.7508 20 7 7.6471 -2.4805 -2.9154 21 14 8.4442 -1.5631 -0.4334 22 1 8.7374 -0.1128 -0.5607 23 1 7.8685 -1.8358 0.9080 24 1 9.6998 -2.3383 -0.6000 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9565 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 0.4401 -2.1638 1.2491 33 1 1.8935 -2.6776 0.3590 34 1 1.6761 -2.3711 3.3883 35 1 1.6768 -3.9128 2.4982 36 1 3.4898 -3.2997 0.3866 37 1 5.1265 -3.3495 1.0842 38 1 3.9881 -4.6834 1.3893 39 1 5.1697 -1.4424 2.4999 40 1 3.7160 -0.9285 3.3889 41 1 3.4478 -1.9347 -0.4883 42 1 7.0164 -2.8129 -3.5732 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153646720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:37 Heat of formation + Delta-G solvation = -72.497240 kcal Electronic energy + Delta-G solvation = -20769.594477 eV Core-core repulsion = 17941.117795 eV Total energy + Delta-G solvation = -2828.476682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.21384 -37.01492 -35.35027 -32.92067 -32.47612 -30.29221 -29.54611 -27.01512 -26.13438 -25.75506 -22.38859 -21.85396 -20.15356 -19.33639 -18.10082 -17.99748 -16.10303 -15.34448 -14.75388 -14.62085 -13.99508 -13.75113 -13.40548 -13.17762 -13.14760 -12.86695 -12.76727 -12.18624 -12.11304 -11.90846 -11.87208 -11.67420 -11.51563 -11.05033 -10.91322 -10.60000 -10.53414 -10.42248 -10.34417 -10.14405 -9.98539 -9.70090 -9.43802 -9.19668 -8.85399 -7.85241 -7.50030 -6.91442 -4.82399 3.61841 3.69395 4.09919 4.38935 4.51943 4.68386 4.83912 4.87105 5.00789 5.17642 5.29920 5.33837 5.52949 5.56912 5.65312 5.68632 5.77331 5.78467 5.82652 5.88850 5.95471 6.00456 6.04967 6.11574 6.17331 6.26020 6.28145 6.39425 6.40382 6.50944 6.56506 6.63021 6.73927 6.75561 6.90521 7.10198 7.61467 7.80580 7.90000 8.20534 8.92670 9.21138 10.21422 10.40009 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.023587 B = 0.008071 C = 0.007145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.799511 B = 3468.272641 C = 3917.663637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.086 4.086 5 H 0.073 0.927 6 C -0.117 4.117 7 C -0.111 4.111 8 C -0.085 4.085 9 H 0.057 0.943 10 C -0.144 4.144 11 C -0.127 4.127 12 C 0.162 3.838 13 H 0.070 0.930 14 N -0.743 5.743 15 C 0.556 3.444 16 O -0.618 6.618 17 C -0.601 4.601 18 H 0.066 0.934 19 C 0.062 3.938 20 N -0.838 5.838 21 Si 1.121 2.879 22 H -0.290 1.290 23 H -0.273 1.273 24 H -0.324 1.324 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.029 0.971 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.385 0.615 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.854 1.008 7.969 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.105 4.105 5 H 0.091 0.909 6 C -0.155 4.155 7 C -0.148 4.148 8 C -0.104 4.104 9 H 0.075 0.925 10 C -0.201 4.201 11 C -0.166 4.166 12 C 0.056 3.944 13 H 0.088 0.912 14 N -0.397 5.397 15 C 0.364 3.636 16 O -0.511 6.511 17 C -0.637 4.637 18 H 0.084 0.916 19 C -0.155 4.155 20 N -0.466 5.466 21 Si 0.953 3.047 22 H -0.217 1.217 23 H -0.200 1.200 24 H -0.256 1.256 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.221 0.779 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.818 1.664 8.653 14.741 hybrid contribution -2.142 -0.523 -0.759 2.332 sum -13.960 1.141 7.894 16.078 Atomic orbital electron populations 1.21896 0.95826 1.01459 1.01194 1.21106 0.94856 0.96458 0.98544 1.21863 1.02155 0.95667 1.00829 1.21439 0.95354 0.95754 0.97983 0.90884 1.21687 0.99586 0.95394 0.98809 1.21541 0.96029 0.99607 0.97640 1.21016 0.94402 0.96432 0.98536 0.92456 1.22237 1.02974 0.97271 0.97651 1.21988 1.02335 0.95041 0.97236 1.20577 0.91180 0.96401 0.86220 0.91222 1.46156 1.10907 1.55212 1.27470 1.18255 0.79866 0.80639 0.84884 1.90211 1.54318 1.48206 1.58344 1.21988 0.94949 1.38960 1.07815 0.91563 1.27030 0.98831 0.90804 0.98811 1.70630 1.39982 1.31874 1.04154 0.82610 0.71175 0.75815 0.75094 1.21728 1.19984 1.25551 0.93145 0.92602 0.93070 0.90911 0.91706 0.93227 0.93236 0.92170 0.91487 0.92630 0.92595 0.91272 0.91586 0.95185 0.90499 0.92892 0.77947 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.84 37.16 0.33 -1.23 16 2 C -0.09 -1.18 2.34 -90.62 -0.21 -1.39 16 3 C -0.15 -1.98 8.84 37.16 0.33 -1.66 16 4 C -0.09 -1.16 1.54 -90.62 -0.14 -1.30 16 5 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 6 C -0.12 -1.46 4.50 -26.73 -0.12 -1.58 16 7 C -0.11 -1.39 5.45 -26.73 -0.15 -1.54 16 8 C -0.09 -1.31 3.19 -90.62 -0.29 -1.60 16 9 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 10 C -0.14 -2.53 7.70 37.16 0.29 -2.24 16 11 C -0.13 -2.17 5.02 -26.71 -0.13 -2.31 16 12 C 0.16 2.80 1.84 -67.91 -0.12 2.67 16 13 H 0.07 1.34 6.25 -51.93 -0.32 1.02 16 14 N -0.74 -14.88 2.36 -55.19 -0.13 -15.01 16 15 C 0.56 14.18 5.70 -12.99 -0.07 14.10 16 16 O -0.62 -17.25 11.07 5.20 0.06 -17.19 16 17 C -0.60 -16.65 9.93 -35.63 -0.35 -17.00 16 18 H 0.07 1.83 8.06 -52.49 -0.42 1.41 16 19 C 0.06 1.80 5.52 -17.37 -0.10 1.70 16 20 N -0.84 -24.40 13.64 55.55 0.76 -23.64 16 21 Si 1.12 29.68 26.42 -169.99 -4.49 25.19 16 22 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 23 H -0.27 -7.35 6.37 56.52 0.36 -6.99 16 24 H -0.32 -8.29 7.11 56.52 0.40 -7.89 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 1.06 7.14 -51.93 -0.37 0.69 16 29 H 0.06 1.04 6.43 -51.93 -0.33 0.70 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 33 H 0.07 0.90 5.13 -51.93 -0.27 0.64 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.19 3.35 -51.93 -0.17 1.02 16 37 H 0.07 1.41 6.56 -51.93 -0.34 1.07 16 38 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 1.60 7.14 -51.93 -0.37 1.23 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.38 7.17 5.03 -40.82 -0.21 6.97 16 42 H 0.28 7.75 8.72 -40.82 -0.36 7.39 16 LS Contribution 302.56 15.07 4.56 4.56 Total: -1.00 -29.82 302.56 -6.89 -36.71 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.90 Total: 2.76 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.75 Total: -13.37 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.63 Total: -38.65 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.06 Total: -17.19 kcal Atomic # 14 Polarization: 29.68 SS G_CDS: -4.49 Total: 25.19 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.82 -6.89 -36.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153646720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.792 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds