Wall clock time and date at job start Mon Mar 30 2020 07:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46676 * 2 1 4 4 C 1.52997 * 109.47528 * 120.00387 * 2 1 3 5 5 H 1.09001 * 109.46696 * 300.00489 * 4 2 1 6 6 C 1.52999 * 109.46939 * 59.99990 * 4 2 1 7 7 C 1.53000 * 109.46965 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46885 * 299.99997 * 7 6 4 9 9 H 1.09000 * 109.46902 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47127 * 299.99781 * 8 7 6 11 11 C 1.52999 * 109.47316 * 60.00218 * 8 7 6 12 12 C 1.52995 * 109.47403 * 180.02562 * 4 2 1 13 13 H 1.08998 * 109.47001 * 59.99522 * 12 4 2 14 14 N 1.46511 * 109.46866 * 299.99828 * 12 4 2 15 15 C 1.34775 * 119.99708 * 167.42825 * 14 12 4 16 16 O 1.21685 * 120.00215 * 0.02562 * 15 14 12 17 17 C 1.46374 * 119.99969 * 180.02562 * 15 14 12 18 18 H 1.08000 * 119.99472 * 8.96097 * 17 15 14 19 19 C 1.40044 * 120.00031 * 188.96019 * 17 15 14 20 20 N 1.30676 * 119.99818 * 191.46128 * 19 17 15 21 21 Si 1.86792 * 120.00095 * 11.45995 * 19 17 15 22 22 H 1.48507 * 109.47112 * 269.99884 * 21 19 17 23 23 H 1.48497 * 109.47423 * 30.00055 * 21 19 17 24 24 H 1.48500 * 109.47306 * 150.00158 * 21 19 17 25 25 H 1.08994 * 109.47458 * 60.00028 * 1 2 3 26 26 H 1.09005 * 109.46841 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47100 * 299.99234 * 1 2 3 28 28 H 1.09006 * 109.46940 * 240.00760 * 2 1 3 29 29 H 1.08999 * 109.46915 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47833 * 300.00279 * 3 2 1 31 31 H 1.09006 * 109.46815 * 60.00684 * 3 2 1 32 32 H 1.09006 * 109.47197 * 300.00175 * 6 4 2 33 33 H 1.08999 * 109.47573 * 60.00196 * 6 4 2 34 34 H 1.08993 * 109.47541 * 60.00102 * 7 6 4 35 35 H 1.09005 * 109.47114 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.47067 * 42.72146 * 10 8 7 37 37 H 1.09002 * 109.47294 * 162.71529 * 10 8 7 38 38 H 1.09002 * 109.47714 * 282.71869 * 10 8 7 39 39 H 1.08993 * 109.46944 * 179.97438 * 11 8 7 40 40 H 1.09001 * 109.47019 * 59.99421 * 11 8 7 41 41 H 0.97001 * 119.99929 * 347.43051 * 14 12 4 42 42 H 0.97003 * 119.99942 * 354.90756 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1391 6 6 1.5302 -2.1638 1.2490 7 6 2.0397 -2.8849 2.4985 8 6 3.5698 -2.8849 2.4990 9 1 3.9328 -3.3990 3.3889 10 6 4.0802 -3.6062 1.2500 11 6 4.0797 -1.4424 2.4991 12 6 3.5701 -0.7207 1.2494 13 1 3.9330 0.3071 1.2496 14 7 4.0589 -1.4110 0.0531 15 6 5.3576 -1.3182 -0.2950 16 8 6.1243 -0.6616 0.3845 17 6 5.8459 -2.0073 -1.4905 18 1 5.1460 -2.4682 -2.1717 19 6 7.2205 -2.0690 -1.7508 20 7 7.6471 -2.4805 -2.9154 21 14 8.4442 -1.5631 -0.4334 22 1 8.7374 -0.1128 -0.5607 23 1 7.8685 -1.8358 0.9080 24 1 9.6998 -2.3383 -0.6000 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9565 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 0.4401 -2.1638 1.2491 33 1 1.8935 -2.6776 0.3590 34 1 1.6761 -2.3711 3.3883 35 1 1.6768 -3.9128 2.4982 36 1 3.4898 -3.2997 0.3866 37 1 5.1265 -3.3495 1.0842 38 1 3.9881 -4.6834 1.3893 39 1 5.1697 -1.4424 2.4999 40 1 3.7160 -0.9285 3.3889 41 1 3.4478 -1.9347 -0.4883 42 1 7.0164 -2.8129 -3.5732 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153646720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:37 Heat of formation + Delta-G solvation = -89.994593 kcal Electronic energy + Delta-G solvation = -20770.353220 eV Core-core repulsion = 17941.117795 eV Total energy + Delta-G solvation = -2829.235425 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.60379 -38.88792 -36.47646 -35.06368 -34.21615 -31.42711 -31.04705 -28.03007 -27.97484 -27.21818 -23.51019 -23.27980 -21.87690 -20.49272 -20.15846 -19.40990 -17.75463 -16.81337 -16.49790 -15.96691 -15.67390 -15.08441 -15.03533 -14.73022 -14.47392 -14.34894 -14.17996 -13.97425 -13.43614 -13.18895 -13.03246 -12.95566 -12.79990 -12.67468 -12.27719 -12.18811 -11.96647 -11.79697 -11.61983 -11.48870 -11.38643 -11.20318 -11.11086 -10.90411 -10.65293 -9.99034 -9.28280 -9.13034 -7.04620 1.43953 1.52005 1.95516 2.24487 2.39850 3.03944 3.38855 3.70600 3.73755 3.91469 4.12015 4.18201 4.22275 4.37915 4.49870 4.53850 4.61443 4.68576 4.75508 4.83221 4.86906 4.92625 5.00527 5.03461 5.08760 5.09648 5.14209 5.21376 5.23637 5.35325 5.40580 5.45325 5.49394 5.50660 5.55794 5.62505 5.65772 5.71416 5.98253 6.22910 6.71116 7.29993 8.15599 8.17160 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.023587 B = 0.008071 C = 0.007145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.799511 B = 3468.272641 C = 3917.663637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.076 4.076 5 H 0.096 0.904 6 C -0.116 4.116 7 C -0.103 4.103 8 C -0.083 4.083 9 H 0.065 0.935 10 C -0.141 4.141 11 C -0.126 4.126 12 C 0.158 3.842 13 H 0.047 0.953 14 N -0.724 5.724 15 C 0.559 3.441 16 O -0.643 6.643 17 C -0.615 4.615 18 H 0.060 0.940 19 C 0.030 3.970 20 N -0.856 5.856 21 Si 1.152 2.848 22 H -0.296 1.296 23 H -0.287 1.287 24 H -0.308 1.308 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.029 0.971 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.017 0.983 38 H 0.044 0.956 39 H 0.030 0.970 40 H 0.080 0.920 41 H 0.394 0.606 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.842 0.881 9.543 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.094 4.094 5 H 0.114 0.886 6 C -0.153 4.153 7 C -0.140 4.140 8 C -0.102 4.102 9 H 0.084 0.916 10 C -0.199 4.199 11 C -0.165 4.165 12 C 0.053 3.947 13 H 0.065 0.935 14 N -0.377 5.377 15 C 0.364 3.636 16 O -0.537 6.537 17 C -0.653 4.653 18 H 0.078 0.922 19 C -0.184 4.184 20 N -0.485 5.485 21 Si 0.983 3.017 22 H -0.223 1.223 23 H -0.214 1.214 24 H -0.239 1.239 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.099 0.901 41 H 0.231 0.769 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.839 1.522 10.220 18.082 hybrid contribution -1.267 -0.456 -1.225 1.820 sum -16.106 1.066 8.995 18.478 Atomic orbital electron populations 1.21831 0.93187 1.02495 1.02139 1.21093 0.96963 0.95550 0.97351 1.21844 0.99851 0.96627 1.02043 1.21397 0.91641 0.97217 0.99172 0.88620 1.21707 1.01356 0.93994 0.98241 1.21506 0.92970 1.01028 0.98521 1.21022 0.97002 0.94623 0.97513 0.91620 1.22175 0.99941 0.98647 0.99103 1.21940 0.99522 0.96886 0.98120 1.20789 0.94378 0.94701 0.84833 0.93512 1.45882 1.09146 1.54421 1.28234 1.18054 0.81547 0.79914 0.84104 1.90187 1.55623 1.49085 1.58791 1.22146 0.94873 1.39384 1.08853 0.92205 1.27662 1.00245 0.90984 0.99475 1.70641 1.40091 1.33304 1.04511 0.82171 0.70847 0.75350 0.73328 1.22312 1.21405 1.23906 0.92813 0.91491 0.91605 0.93098 0.95189 0.92666 0.91430 0.89143 0.92878 0.90435 0.90975 0.91308 0.96350 0.93681 0.95151 0.90137 0.76925 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.84 71.98 0.64 -1.76 16 2 C -0.09 -2.14 2.34 -10.79 -0.03 -2.17 16 3 C -0.15 -3.73 8.84 71.98 0.64 -3.09 16 4 C -0.08 -1.80 1.54 -10.80 -0.02 -1.81 16 5 H 0.10 1.94 8.14 -2.39 -0.02 1.93 16 6 C -0.12 -2.41 4.50 30.59 0.14 -2.27 16 7 C -0.10 -2.13 5.45 30.59 0.17 -1.97 16 8 C -0.08 -2.38 3.19 -10.79 -0.03 -2.42 16 9 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 10 C -0.14 -4.89 7.70 71.98 0.55 -4.34 16 11 C -0.13 -4.20 5.02 30.61 0.15 -4.05 16 12 C 0.16 5.36 1.84 45.00 0.08 5.44 16 13 H 0.05 1.82 6.25 -2.39 -0.01 1.81 16 14 N -0.72 -29.38 2.36 -446.75 -1.05 -30.43 16 15 C 0.56 29.37 5.70 86.36 0.49 29.86 16 16 O -0.64 -37.07 11.07 -4.30 -0.05 -37.11 16 17 C -0.62 -35.14 9.93 24.83 0.25 -34.90 16 18 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16 19 C 0.03 1.77 5.52 85.30 0.47 2.24 16 20 N -0.86 -50.74 13.64 21.83 0.30 -50.44 16 21 Si 1.15 61.83 26.42 68.60 1.81 63.64 16 22 H -0.30 -15.99 7.11 99.48 0.71 -15.29 16 23 H -0.29 -15.88 6.37 99.48 0.63 -15.25 16 24 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 1.02 6.43 -2.38 -0.02 1.00 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 1.42 7.14 -2.38 -0.02 1.40 16 29 H 0.03 0.95 6.43 -2.39 -0.02 0.94 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.09 1.43 6.43 -2.38 -0.02 1.42 16 33 H 0.05 1.27 5.13 -2.39 -0.01 1.26 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.07 2.33 3.35 -2.39 -0.01 2.32 16 37 H 0.02 0.78 6.56 -2.39 -0.02 0.76 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.03 1.28 7.14 -2.39 -0.02 1.27 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.39 14.70 5.03 -92.71 -0.47 14.24 16 42 H 0.28 15.81 8.72 -92.71 -0.81 15.00 16 Total: -1.00 -66.64 302.56 4.93 -61.70 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.42 Total: 13.88 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 3.50 Total: -21.24 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -0.76 Total: -80.87 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.05 Total: -37.11 kcal Atomic # 14 Polarization: 61.83 SS G_CDS: 1.81 Total: 63.64 kcal Total: -66.64 4.93 -61.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153646720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.291 kcal (2) G-P(sol) polarization free energy of solvation -66.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds